###########################################################################
#
# File: mmcif_nmr-star.dic
# Date: Wed Feb 20 07:49:15 EST 2013
#
# Created from files in CVS module dict-mmcif_nmr-star.dic unless noted:
# mmcif_nmr-star-header.dic
# mmcif_nmr-star-data.dic
# mmcif_nmr-star-def-1.dic
# mmcif_nmr-star-def-ilg.dic
#
###########################################################################
data_mmcif_nmr-star.dic
# version date - 2006-04-03
# The majority of the following item type definitions and descriptions for units
# have been taken from the pdbx and mmCIF dictionaries.
# The NMR-STAR dictionary has been constructed to be congruent with the pdbx
# where the data being modeled are equivalent. In these cases, where possible
# identical items have been used and the definitions for these items are
# intended to be identical.
_datablock.id mmcif_nmr-star.dic
_datablock.description
;
This data block contains the NMR-STAR dictionary.
;
_dictionary.title mmcif_nmr-star.dic
_dictionary.datablock_id mmcif_nmr-star.dic
_dictionary.version 3.0.8.34
loop_
_dictionary_history.version
_dictionary_history.update
_dictionary_history.revision
3.0.6.20 2006-04-04
;
?
;
3.0.8.34 2006-08-18
;
?
;
stop_
loop_
_sub_category.id
_sub_category.description
? ?
stop_
loop_
_category_group_list.id
_category_group_list.parent_id
_category_group_list.description
'inclusive_group' .
;
Categories that belong to the NMR-STAR dictionary.
;
'deposited_data_files'
'inclusive_group'
;
Categories that capture information about the data files that are uploaded for depositions.
;
'entry_interview'
'inclusive_group'
;
Categories that record an overview of the information to be deposited by an author.
;
'experiment_list'
'inclusive_group'
;
Categories that record the details about the experiments performed.
;
'study_list'
'inclusive_group'
;
Categories that describe a study of a molecular system that includes data from one or more entries.
;
'entry_information'
'inclusive_group'
;
Categories that describe an entry.
;
'citations'
'inclusive_group'
;
Categories that provide bibliographic references.
;
'chem_comp'
'inclusive_group'
;
Categories that describe chemical components of entities and molecular assemblies.
;
'entity'
'inclusive_group'
;
Categories that describe the polymer and non-polymer molecules that make up a molecular assembly.
;
'assembly'
'inclusive_group'
;
Categories that describe a molecular assembly.
;
'assembly_annotation'
'inclusive_group'
;
Categories that provide annotations for a molecular assembly.
;
'assembly_subsystems'
'inclusive_group'
;
Categories that describe subsystems of a molecular assembly.
;
'natural_source'
'inclusive_group'
;
Categories that describe the organism or other body found in nature that produces a molecular entity.
;
'experimental_source'
'inclusive_group'
;
Categories that describe the system used to produce a molecular entity for scientific experiments.
;
'sample'
'inclusive_group'
;
Categories that describe the contents and other details about the samples used in scientific experiments.
;
'sample_conditions'
'inclusive_group'
;
Categories that describe the experimental conditions used in conducting individual scientific experiments.
;
'molecule_purity'
'inclusive_group'
;
Categories that describe the measured purity of the molecular entity.
;
'software'
'inclusive_group'
;
Categories that describe computer software.
;
'method'
'inclusive_group'
;
Categories that describe software or physical methods used to produce a product.
;
'nmr_spectrometer'
'inclusive_group'
;
Categories that describe an NMR spectrometer.
;
'nmr_spectrometer_list'
'inclusive_group'
;
Categories that define a list of NMR spectrometers and their properties.
;
'nmr_spectrometer_probe'
'inclusive_group'
;
Categories that describe an NMR spectrometer probe.
;
'nmr_spectrometer_expt_list'
'inclusive_group'
;
Categories that define a list of NMR spectrometer experiments.
;
'nmr_spectrometer_expt'
'inclusive_group'
;
Categories that describe an NMR spectrometer experiment in detail.
;
'nmr_spectral_processing'
'inclusive_group'
;
Categories that describe how the data from an NMR spectrometer experiment has been processed.
;
'computer'
'inclusive_group'
;
Categories that describe a computer.
;
'chem_shift_reference'
'inclusive_group'
;
Categories that capture information about the compounds and parameters used to reference NMR chemical shifts.
;
'assigned_chemical_shifts'
'inclusive_group'
;
Categories that capture assigned chemical shift values and links to the samples, sample conditions, NMR experiments, and other information about how the assigned chemical shifts were derived.
;
'coupling_constants'
'inclusive_group'
;
Categories that capture coupling constant values and links to the samples, sample conditions, NMR experiments, and other information about how the coupling constants were derived.
;
'spectral_peak_list'
'inclusive_group'
;
Categories that capture the properties of NMR spectral peaks, spectral parameters, and links to the NMR experiments and other information regarding the data.
;
'value_derivation'
'inclusive_group'
;
?
;
'chem_shift_isotope_effect'
'inclusive_group'
;
Categories that capture chemical shift isotope effect values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'chem_shift_interaction_diff'
'inclusive_group'
;
Categories that capture chemical shift deviations caused by molecular interactions and links to the samples, sample conditions, NMR experiments, and other information about how the deviation values were derived.
;
'chem_shift_anisotropy'
'inclusive_group'
;
Categories that capture chemical shift anisotropy values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'theoretical_chem_shifts'
'inclusive_group'
;
Categories that capture theoretical chemical shift values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'chem_shifts_calc_type'
'inclusive_group'
;
Categories that define the type of calculation used to generate a list of theoretical chemical shifts for a molecule.
;
'chem_shielding_tensors'
'inclusive_group'
;
Categories that describe the chemical shielding tensors for a theoretical chemical shift calculation.
;
'rdcs'
'inclusive_group'
;
Categories that capture residual dipolar coupling values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'dipolar_couplings'
'inclusive_group'
;
Categories that capture dipolar coupling values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'spectral_density_values'
'inclusive_group'
;
Categories that capture spectral density values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'other_data_types'
'inclusive_group'
;
Categories that capture the values for other kinds of data not modeled in specific category groups in the dictionary and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'h_exch_rates'
'inclusive_group'
;
Categories that capture hydrogen exchange rate data and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'h_exch_protection_factors'
'inclusive_group'
;
Categories that capture hydrogen exchange protection factor data and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'homonucl_noes'
'inclusive_group'
;
Categories that capture homonuclear NOE values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'heteronucl_noes'
'inclusive_group'
;
Categories that capture heteronuclear NOE values and links to the samples, sample conditions, NMR experiments, and other information about how the values were derived.
;
'heteronucl_t1_relaxation'
'inclusive_group'
;
Categories that capture heteronuclear T1 relaxation values and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'heteronucl_t1rho_relaxation'
'inclusive_group'
;
Categories that capture heteronuclear T1rho relaxation values and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'heteronucl_t2_relaxation'
'inclusive_group'
;
Categories that capture heteronuclear T2 relaxation values and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'dipole_dipole_relaxation'
'inclusive_group'
;
Categories that capture dipole-dipole relaxation values and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'dipole_dipole_cross_correlations'
'inclusive_group'
;
Categories that capture dipole-dipole cross correlation data and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'dipole_csa_cross_correlations'
'inclusive_group'
;
Categories that capture dipole-CSA cross correlation data and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'order_parameters'
'inclusive_group'
;
Categories that capture order parameter values and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'ph_titration'
'inclusive_group'
;
Categories that capture the pKa or pHmid values derived from a pH titration experiment and links to the experimental details.
;
'ph_param_list'
'inclusive_group'
;
Categories that capture the NMR spectral parameters derived from a pH titration experiment.
;
'd_h_fractionation_factors'
'inclusive_group'
;
Categories that capture deuterium-hydrogen fractionation factor values and links to the samples, sample conditions, NMR experiments, and other information about how the data were derived.
;
'deduced_secd_struct_features'
'inclusive_group'
;
Categories that capture secondary structure features deduced from experimental data, but not derived from a three-dimensional structure and links to the data used to deduce the secondary structure features.
;
'deduced_hydrogen_bonds'
'inclusive_group'
;
Categories that capture hydrogen bonds information deduced from experimental data, but not derived from a three-dimensional structure and links to the data used to deduce the hydrogen bonds.
;
'conformer_statistics'
'inclusive_group'
;
Categories that capture statistics derived from the three-dimensional conformers calculated for a biomolecule.
;
'constraint_statistics'
'inclusive_group'
;
Categories that capture statistics derived from the constraints used to calculate the three-dimension conformers for a biomolecule and the constraint violations.
;
'representative_conformer'
'inclusive_group'
;
Categories that capture the atomic coordinates for a representative conformer of a biomolecular system and links to the experimental conditions and data used to derive the conformer.
;
'conformer_family_coord_set'
'inclusive_group'
;
Categories that capture the atomic coordinates for a family of conformers for a biomolecular system and links to the experimental conditions and data used to calculate the conformer family.
;
'force_constants'
'inclusive_group'
;
Categories that describe the values for the force constants used in calculating a family of conformers for a biomolecular system.
;
'angular_order_parameters'
'inclusive_group'
;
Categories that capture a set of angular order parameters calculated from a family of conformers.
;
'tertiary_struct_elements'
'inclusive_group'
;
Categories that describe the tertiary structure elements found in the conformers calculated for a biomolecular system.
;
'secondary_structs'
'inclusive_group'
;
Categories that describe the secondary structure elements found in the conformers calculated for a biomolecular system.
;
'bond_annotation'
'inclusive_group'
;
Categories that capture annotations for the bonds found in the conformers calculated for a biomolecular system.
;
'structure_interactions'
'inclusive_group'
;
Categories that describe the interactions between molecules in a biomolecular system that have been found through the analysis of the calculated conformers.
;
'other_struct_features'
'inclusive_group'
;
Categories that provide a means for describing other structure features not specifically defined in other category groups.
;
'distance_constraints'
'inclusive_group'
;
Categories that capture the distance constraints used to calculate one or more conformers for a biomolecular system.
;
'floating_chiral_stereo_assign'
'inclusive_group'
;
Categories that capture the floating chirality stereo assignments used in calculating the conformers for a biomolecular system.
;
'torsion_angle_constraints'
'inclusive_group'
;
Categories that capture the torsion angle distance constraints used to calculate one or more conformers for a biomolecular system.
;
'rdc_constraints'
'inclusive_group'
;
Categories that capture the residual dipolar coupling constraints used to calculate one or more conformers for a biomolecular system.
;
'j_three_bond_constraints'
'inclusive_group'
;
Categories that capture the three bond scalar coupling constraints used to calculate one or more conformers for a biomolecular system.
;
'ca_cb_chem_shift_constraints'
'inclusive_group'
;
Categories that capture the protein CA and CB chemical shift constraints used to calculate one or more conformers for a biomolecular system.
;
'h_chem_shift_constraints'
'inclusive_group'
;
Categories that capture the proton chemical shift constraints used to calculate one or more conformers for a biomolecular system.
;
'other_constraints'
'inclusive_group'
;
Categories that capture values for other kinds of constraints not specifically defined in other category groups used to calculate one or more conformers for a biomolecular system.
;
stop_
####################
## ITEM_TYPE_LIST ##
####################
#
#
# The regular expressions defined here are not compliant
# with the POSIX 1003.2 standard as they include the
# '\n' and '\t' special characters. These regular expressions
# have been tested using the version 0.12 of Richard Stallman's
# GNU regular expression libary in POSIX mode.
#
#
# For some data items, a standard syntax is assumed. The syntax is
# described for each data item in the dictionary, but is summarized here:
#
# Names: The family name(s) followed by a comma, precedes the first
# name(s) or initial(s).
#
# Telephone numbers:
# The international code is given in brackets and any extension
# number is preceded by 'ext'.
#
# Dates: In the form yyyy-mm-dd.
#
##############################################################################
loop_
_item_type_list.code
_item_type_list.primitive_code
_item_type_list.construct
_item_type_list.detail
code char
'[_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*'
; code item types/single words ...
;
ucode uchar
'[_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*'
; code item types/single words (case insensitive) ...
;
line char
'[][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*'
; char item types / multi-word items ...
;
uline uchar
'[][ \t_(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*'
; char item types / multi-word items (case insensitive)...
;
text char
'[][ \n\t()_,.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*'
; text item types / multi-line text ...
;
int numb
'-?[0-9]+'
; int item types are the subset of numbers that are the negative
or positive integers.
;
float numb
'-?(([0-9]+)[.]?|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?'
; int item types are the subset of numbers that are the floating
numbers.
;
name uchar
'_[_A-Za-z0-9]+\.[][_A-Za-z0-9%-]+'
; name item types take the form...
;
idname uchar
'[_A-Za-z0-9]+'
; idname item types take the form...
;
any char
'.*'
; A catch all for items that may take any form...
;
yyyy-mm-dd char
'[0-9]?[0-9]?[0-9][0-9]-[0-9]?[0-9]-[0-9][0-9]'
;
Standard format for CIF dates.
;
uchar3 uchar
'[+]?[A-Za-z0-9][A-Za-z0-9][A-Za-z0-9]'
;
data item for 3 character codes
;
uchar1 uchar
'[+]?[A-Za-z0-9]'
;
data item for 1 character codes
;
yes_no char
'.?.?.?'
;
data item for bolean codes that have values of 'yes' or 'no'
;
symop char
'([1-9]|[1-9][0-9]|1[0-8][0-9]|19[0-2])(_[1-9][1-9][1-9])?'
; symop item types take the form n_klm, where n refers to the
symmetry operation that is applied to the coordinates in the
ATOM_SITE category identified by _atom_site_label. It must
match a number given in _symmetry_equiv_pos_site_id.
k, l, and m refer to the translations that are subsequently
applied to the symmetry transformed coordinates to generate
the atom used. These translations (x,y,z) are related to
(k,l,m) by
k = 5 + x
l = 5 + y
m = 5 + z
By adding 5 to the translations, the use of negative numbers
is avoided.
;
atcode char
'[][ _(),.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*'
; Character data type for atom names ...
;
yyyy-mm-dd:hh:mm char
'[0-9]?[0-9]?[0-9][0-9]-[0-9]?[0-9](-[0-9]?[0-9])?(:[0-9]?[0-9]:[0-9][0-9])?'
;
Standard format for CIF dates with optional time stamp.
;
fax uchar
'[_,.;:"&<>/\{}'`~!@#$%A-Za-z0-9*|+-]*'
; code item types/single words (case insensitive) ...
;
phone uchar
'[_,.;:"&<>/\{}'`~!@#$%A-Za-z0-9*|+-]*'
; code item types/single words (case insensitive) ...
;
email uchar
'[_,.;:"&<>/\{}'`~!@#$%A-Za-z0-9*|+-]*'
; code item types/single words (case insensitive) ...
;
int-range numb
'-?[0-9]+(--?[0-9]+)?'
; int item types are the subset of numbers that are the negative
or positive integers with optional range.
;
float-range numb
'-?(([0-9]+)[.]?|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?(--?(([0-9]+)[.]?|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?)?'
; int item types are the subset of numbers that are the floating
numbers.
;
code30 char
'.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?.?'
'A string value, not allowed to exceed 30 characters.'
#
binary char
;\n--CIF-BINARY-FORMAT-SECTION--\n\
[][ \n\t()_,.;:"&<>/\{}'`~!@#$%?+=*A-Za-z0-9|^-]*\
\n--CIF-BINARY-FORMAT-SECTION----
;
; binary items are presented as MIME-like ascii-encoded
sections in an imgCIF. In a CBF, raw octet streams
are used to convey the same information.
;
label char
\$[_,.;:"&<>()/\{}'`~!@#$%A-Za-z0-9*|+-]*
; A value that begins with the character '$' and points to a saveframe.
;
stop_
#####################
## ITEM_UNITS_LIST ##
#####################
loop_
_item_units_list.code
_item_units_list.detail
#
'metres' 'metres'
'centimetres' 'centimetres (meters * 10^( -2))'
'millimetres' 'millimetres (meters * 10^( -3))'
'nanometres' 'nanometres (meters * 10^( -9))'
'angstroms' 'angstroms (meters * 10^(-10))'
'picometres' 'picometres (meters * 10^(-12))'
'femtometres' 'femtometres (meters * 10^(-15))'
#
'reciprocal_centimetres' 'reciprocal centimetres (meters * 10^( -2)^-1)'
'reciprocal_millimetres' 'reciprocal millimetres (meters * 10^( -3)^-1)'
'reciprocal_nanometres' 'reciprocal nanometres (meters * 10^( -9)^-1)'
'reciprocal_angstroms' 'reciprocal angstroms (meters * 10^(-10)^-1)'
'reciprocal_picometres' 'reciprocal picometres (meters * 10^(-12)^-1)'
#
'nanometres_squared' 'nanometres squared (meters * 10^( -9))^2'
'angstroms_squared' 'angstroms squared (meters * 10^(-10))^2'
'8pi2_angstroms_squared' '8pi^2 * angstroms squared (meters * 10^(-10))^2'
'picometres_squared' 'picometres squared (meters * 10^(-12))^2'
#
'nanometres_cubed' 'nanometres cubed (meters * 10^( -9))^3'
'angstroms_cubed' 'angstroms cubed (meters * 10^(-10))^3'
'picometres_cubed' 'picometres cubed (meters * 10^(-12))^3'
#
'kilopascals' 'kilopascals'
'gigapascals' 'gigapascals'
#
'hours' 'hours'
'minutes' 'minutes'
'seconds' 'seconds'
'microseconds' 'microseconds'
#
'degrees' 'degrees (of arc)'
#
'degrees_per_minute' 'degrees (of arc) per minute'
#
'celsius' 'degrees (of temperature) Celsius'
'kelvins' 'degrees (of temperature) Kelvin'
#
'electrons' 'electrons'
#
'electrons_squared' 'electrons squared'
#
'electrons_per_nanometres_cubed'
; electrons per nanometres cubed (meters * 10^( -9))^3
;
'electrons_per_angstroms_cubed'
; electrons per angstroms cubed (meters * 10^(-10))^3
;
'electrons_per_picometres_cubed'
; electrons per picometres cubed (meters * 10^(-12))^3
;
'kilowatts' 'kilowatts'
'milliamperes' 'milliamperes'
'kilovolts' 'kilovolts'
#
'arbitrary'
; arbitrary system of units.
;
#
'angstroms_degrees' 'angstroms * degrees'
#
'degrees_squared' 'degrees squared'
#
'mg_per_ml' 'milliliter per milligram'
#
'ml_per_min' 'milliliter per minute'
#
'milliliters' 'liter / 1000'
#
'milligrams' 'grams / 1000'
#
'megadaltons' 'megadaltons'
'microns_squared' 'microns squared'
'microns' 'microns'
# 'millimeters' 'millimeters'
'electrons_angstrom_squared' 'electrons square angstrom'
'electron_volts' 'electron volts'
# 'mg/ml' 'mg per milliliter'
'millimolar' 'millimolar'
'megagrams_per_cubic_metre' 'megagrams per cubic metre'
'pixels_per_millimetre' 'pixels per millimetre'
'counts' 'counts'
'counts_per_photon' 'counts per photon'
#
loop_
_item_units_conversion.from_code
_item_units_conversion.to_code
_item_units_conversion.operator
_item_units_conversion.factor
###
'metres' 'centimetres' '*' 1.0E+02
'metres' 'millimetres' '*' 1.0E+03
'metres' 'nanometres' '*' 1.0E+09
'metres' 'angstroms' '*' 1.0E+10
'metres' 'picometres' '*' 1.0E+12
'metres' 'femtometres' '*' 1.0E+15
'centimetres' 'millimetres' '*' 1.0E+01
'centimetres' 'nanometres' '*' 1.0E+07
'centimetres' 'angstroms' '*' 1.0E+08
'centimetres' 'picometres' '*' 1.0E+10
'centimetres' 'femtometres' '*' 1.0E+13
#
'millimetres' 'centimetres' '*' 1.0E-01
'millimetres' 'nanometres' '*' 1.0E+06
'millimetres' 'angstroms' '*' 1.0E+07
'millimetres' 'picometres' '*' 1.0E+09
'millimetres' 'femtometres' '*' 1.0E+12
#
'nanometres' 'centimetres' '*' 1.0E-07
'nanometres' 'millimetres' '*' 1.0E-06
'nanometres' 'angstroms' '*' 1.0E+01
'nanometres' 'picometres' '*' 1.0E+03
'nanometres' 'femtometres' '*' 1.0E+06
#
'angstroms' 'centimetres' '*' 1.0E-08
'angstroms' 'millimetres' '*' 1.0E-07
'angstroms' 'nanometres' '*' 1.0E-01
'angstroms' 'picometres' '*' 1.0E+02
'angstroms' 'femtometres' '*' 1.0E+05
#
'picometres' 'centimetres' '*' 1.0E-10
'picometres' 'millimetres' '*' 1.0E-09
'picometres' 'nanometres' '*' 1.0E-03
'picometres' 'angstroms' '*' 1.0E-02
'picometres' 'femtometres' '*' 1.0E+03
#
'femtometres' 'centimetres' '*' 1.0E-13
'femtometres' 'millimetres' '*' 1.0E-12
'femtometres' 'nanometres' '*' 1.0E-06
'femtometres' 'angstroms' '*' 1.0E-05
'femtometres' 'picometres' '*' 1.0E-03
###
'reciprocal_centimetres' 'reciprocal_millimetres' '*' 1.0E-01
'reciprocal_centimetres' 'reciprocal_nanometres' '*' 1.0E-07
'reciprocal_centimetres' 'reciprocal_angstroms' '*' 1.0E-08
'reciprocal_centimetres' 'reciprocal_picometres' '*' 1.0E-10
#
'reciprocal_millimetres' 'reciprocal_centimetres' '*' 1.0E+01
'reciprocal_millimetres' 'reciprocal_nanometres' '*' 1.0E-06
'reciprocal_millimetres' 'reciprocal_angstroms' '*' 1.0E-07
'reciprocal_millimetres' 'reciprocal_picometres' '*' 1.0E-09
#
'reciprocal_nanometres' 'reciprocal_centimetres' '*' 1.0E+07
'reciprocal_nanometres' 'reciprocal_millimetres' '*' 1.0E+06
'reciprocal_nanometres' 'reciprocal_angstroms' '*' 1.0E-01
'reciprocal_nanometres' 'reciprocal_picometres' '*' 1.0E-03
#
'reciprocal_angstroms' 'reciprocal_centimetres' '*' 1.0E+08
'reciprocal_angstroms' 'reciprocal_millimetres' '*' 1.0E+07
'reciprocal_angstroms' 'reciprocal_nanometres' '*' 1.0E+01
'reciprocal_angstroms' 'reciprocal_picometres' '*' 1.0E-02
#
'reciprocal_picometres' 'reciprocal_centimetres' '*' 1.0E+10
'reciprocal_picometres' 'reciprocal_millimetres' '*' 1.0E+09
'reciprocal_picometres' 'reciprocal_nanometres' '*' 1.0E+03
'reciprocal_picometres' 'reciprocal_angstroms' '*' 1.0E+01
###
'nanometres_squared' 'angstroms_squared' '*' 1.0E+02
'nanometres_squared' 'picometres_squared' '*' 1.0E+06
#
'angstroms_squared' 'nanometres_squared' '*' 1.0E-02
'angstroms_squared' 'picometres_squared' '*' 1.0E+04
'angstroms_squared' '8pi2_angstroms_squared' '*' 78.9568
#
'picometres_squared' 'nanometres_squared' '*' 1.0E-06
'picometres_squared' 'angstroms_squared' '*' 1.0E-04
###
'nanometres_cubed' 'angstroms_cubed' '*' 1.0E+03
'nanometres_cubed' 'picometres_cubed' '*' 1.0E+09
#
'angstroms_cubed' 'nanometres_cubed' '*' 1.0E-03
'angstroms_cubed' 'picometres_cubed' '*' 1.0E+06
#
'picometres_cubed' 'nanometres_cubed' '*' 1.0E-09
'picometres_cubed' 'angstroms_cubed' '*' 1.0E-06
###
'kilopascals' 'gigapascals' '*' 1.0E-06
'gigapascals' 'kilopascals' '*' 1.0E+06
###
'hours' 'minutes' '*' 6.0E+01
'hours' 'seconds' '*' 3.6E+03
'hours' 'microseconds' '*' 3.6E+09
#
'minutes' 'hours' '/' 6.0E+01
'minutes' 'seconds' '*' 6.0E+01
'minutes' 'microseconds' '*' 6.0E+07
#
'seconds' 'hours' '/' 3.6E+03
'seconds' 'minutes' '/' 6.0E+01
'seconds' 'microseconds' '*' 1.0E+06
#
'microseconds' 'hours' '/' 3.6E+09
'microseconds' 'minutes' '/' 6.0E+07
'microseconds' 'seconds' '/' 1.0E+06
###
'celsius' 'kelvins' '-' 273.0
'kelvins' 'celsius' '+' 273.0
###
'electrons_per_nanometres_cubed'
'electrons_per_angstroms_cubed' '*' 1.0E-03
'electrons_per_nanometres_cubed'
'electrons_per_picometres_cubed' '*' 1.0E-09
#
'electrons_per_angstroms_cubed'
'electrons_per_nanometres_cubed' '*' 1.0E+03
'electrons_per_angstroms_cubed'
'electrons_per_picometres_cubed' '*' 1.0E-06
#
'electrons_per_picometres_cubed'
'electrons_per_nanometres_cubed' '*' 1.0E+09
'electrons_per_picometres_cubed'
'electrons_per_angstroms_cubed' '*' 1.0E+06
###
stop_
save_study_list
_category.description
;
Items in the study_list category define the saveframe for the study description.
;
_category.id 'study_list'
_category.mandatory_code yes
loop_
_category_key.name
'_study_list.entry_id'
'_study_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'study_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__study_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_study_list.sf_category'
_item.category_id 'study_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
study
;
stop_
_item_type.code 'code'
save_
save__study_list.sf_framecode
_item_description.description
;
Character string that is unique to the saveframe within the data block
defined by a specific entry. The character string names the saveframe and may be
used to reference or to point to the saveframe later in the data block.
;
_item.name '_study_list.sf_framecode'
_item.category_id 'study_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
study
;
stop_
_item_type.code 'code'
save_
save__study_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_study_list.entry_id'
_item.category_id 'study_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
4567
;
stop_
_item_type.code 'code'
save_
save__study_list.id
_item_description.description
;
Unique value identifying this saveframe of category study_list within an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_study_list.id' 'study_list' yes
'_study.study_list_id' 'study' yes
'_study_keyword.study_list_id' 'study_keyword' yes
'_study_entry_list.study_list_id' 'study_entry_list' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_study.study_list_id' '_study_list.id'
'_study_keyword.study_list_id' '_study_list.id'
'_study_entry_list.study_list_id' '_study_list.id'
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_study
_category.description
;
Items in the study category define the study of which the entry is a member.
;
_category.id 'study'
_category.mandatory_code yes
loop_
_category_key.name
'_study.id'
'_study.entry_id'
'_study.study_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'study_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__study.id
_item_description.description
;
Unique code that identifies a specific study.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_study.id' 'study' yes
'_study_keyword.study_id' 'study_keyword' yes
'_study_entry_list.study_id' 'study_entry_list' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_study_keyword.study_id' '_study.id'
'_study_entry_list.study_id' '_study.id'
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__study.name
_item_description.description
;
Descriptive name given to a 'study' where a study is a collection of entries
containing data for a set of related molecular systems or for a single molecular
system but published in more than one citation (i.e. chemical shifts in one
publication and atomic coordinates in another and relaxation studies in a third).
;
_item.name '_study.name'
_item.category_id 'study'
_item.mandatory_code yes
loop_
_item_examples.case
;
Investigation of cytochrome b in the molten globule state
;
stop_
_item_type.code 'text'
save_
save__study.type
_item_description.description
;
A brief phrase that describes the study that was conducted. An enumerated
list of types will be provided but an author will be able to provide their own
description if none of the enumerated values are appropriate.
;
_item.name '_study.type'
_item.category_id 'study'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'Structure analysis' ?
'Mutant comparison' ?
'Interactions with different ligands' ?
stop_
loop_
_item_examples.case
;
structure study
;
stop_
_item_type.code 'line'
save_
save__study.details
_item_description.description
;
Text information relevant to the study are entered as a value for this
tag. This tag is often used to include information that cannot be associated with
a specific tag in the saveframe but is important for the entry. The information
entered must supplement information already present.
;
_item.name '_study.details'
_item.category_id 'study'
_item.mandatory_code no
loop_
_item_examples.case
;
The data from the entries that make up this study were used to determine the structure and dynamics of ribonuclease T1.
;
stop_
_item_type.code 'text'
save_
save__study.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_study.entry_id'
_item.category_id 'study'
_item.mandatory_code yes
loop_
_item_examples.case
;
4567
;
stop_
_item_type.code 'code'
save_
save__study.study_list_id
_item_description.description
;
Pointer to '_Study_list.ID'
;
_item.name '_study.study_list_id'
_item.category_id 'study'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_study_keyword
_category.description
;
Items in the study_keyword category capture keywords that describe a study of a biomolecular system.
;
_category.id 'study_keyword'
_category.mandatory_code yes
loop_
_category_key.name
'_study_keyword.study_id'
'_study_keyword.keyword'
'_study_keyword.entry_id'
'_study_keyword.study_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'study_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__study_keyword.study_id
_item_description.description
;
Pointer to '_Study.ID'
;
_item.name '_study_keyword.study_id'
_item.category_id 'study_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
21
;
stop_
_item_type.code 'int'
save_
save__study_keyword.keyword
_item_description.description
;
A word or brief phrase that can be used to describe or classify the study.
;
_item.name '_study_keyword.keyword'
_item.category_id 'study_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
NMR structure
;
stop_
_item_type.code 'line'
save_
save__study_keyword.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_study_keyword.entry_id'
_item.category_id 'study_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
4567
;
stop_
_item_type.code 'code'
save_
save__study_keyword.study_list_id
_item_description.description
;
Pointer to '_Study_list.ID'
;
_item.name '_study_keyword.study_list_id'
_item.category_id 'study_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_study_entry_list
_category.description
;
Items in the study_entry_list category define a list of entries that together represent a study of a biomolecular system.
;
_category.id 'study_entry_list'
_category.mandatory_code yes
loop_
_category_key.name
'_study_entry_list.study_id'
'_study_entry_list.bmrb_accession_code'
'_study_entry_list.entry_id'
'_study_entry_list.study_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'study_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__study_entry_list.study_id
_item_description.description
;
Pointer to '_Study.ID' not within the entry but across the database.
;
_item.name '_study_entry_list.study_id'
_item.category_id 'study_entry_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__study_entry_list.bmrb_accession_code
_item_description.description
;
BMRB accession number for an entry that is a member of the study.
;
_item.name '_study_entry_list.bmrb_accession_code'
_item.category_id 'study_entry_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
4398
;
stop_
_item_type.code 'code'
save_
save__study_entry_list.bmrb_entry_description
_item_description.description
;
A keyword defining the relationship between the entry and the study.
;
_item.name '_study_entry_list.bmrb_entry_description'
_item.category_id 'study_entry_list'
_item.mandatory_code no
loop_
_item_examples.case
;
Assigned chemical shift entry
;
stop_
_item_type.code 'line'
save_
save__study_entry_list.details
_item_description.description
;
Text providing additional information describing the relationship between
the entry and the study.
;
_item.name '_study_entry_list.details'
_item.category_id 'study_entry_list'
_item.mandatory_code no
loop_
_item_examples.case
;
Complete 13C 15N and 1H chemical shift assignments.
;
stop_
_item_type.code 'text'
save_
save__study_entry_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_study_entry_list.entry_id'
_item.category_id 'study_entry_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
4567
;
stop_
_item_type.code 'code'
save_
save__study_entry_list.study_list_id
_item_description.description
;
Pointer to '_Study_list.ID'
;
_item.name '_study_entry_list.study_list_id'
_item.category_id 'study_entry_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_entry
_category.description
;
Items in the entry category describe an entry.
;
_category.id 'entry'
_category.mandatory_code yes
loop_
_category_key.name
'_entry.id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entry.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_entry.sf_category'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
entry_information
;
stop_
_item_type.code 'code'
save_
save__entry.sf_framecode
_item_description.description
;
STAR framecode for this saveframe. The value is defined as 'entry_information'
for the entry information saveframe in each entry.
;
_item.name '_entry.sf_framecode'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
entry_information
;
stop_
_item_type.code 'code'
save_
save__entry.id
_item_description.description
;
BMRB accession number for this entry
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entry.id' 'entry' yes
'_study_list.entry_id' 'study_list' yes
'_study.entry_id' 'study' yes
'_study_keyword.entry_id' 'study_keyword' yes
'_study_entry_list.entry_id' 'study_entry_list' yes
'_entry_proc_cycle.entry_id' 'entry_proc_cycle' yes
'_entry_prerelease_seq.entry_id' 'entry_prerelease_seq' yes
'_contact_person.entry_id' 'contact_person' yes
'_entry_author.entry_id' 'entry_author' yes
'_sg_project.entry_id' 'sg_project' yes
'_entry_src.entry_id' 'entry_src' yes
'_struct_keywords.entry_id' 'struct_keywords' yes
'_data_set.entry_id' 'data_set' yes
'_datum.entry_id' 'datum' yes
'_release.entry_id' 'release' yes
'_related_entries.entry_id' 'related_entries' yes
'_citation.entry_id' 'citation' yes
'_citation_author.entry_id' 'citation_author' yes
'_citation_keyword.entry_id' 'citation_keyword' yes
'_citation_editor.entry_id' 'citation_editor' yes
'_assembly.entry_id' 'assembly' yes
'_assembly_type.entry_id' 'assembly_type' yes
'_entity_assembly.entry_id' 'entity_assembly' yes
'_struct_asym.entry_id' 'struct_asym' yes
'_assembly_db_link.entry_id' 'assembly_db_link' yes
'_assembly_common_name.entry_id' 'assembly_common_name' yes
'_assembly_systematic_name.entry_id' 'assembly_systematic_name' yes
'_assembly_interaction.entry_id' 'assembly_interaction' yes
'_chem_comp_assembly.entry_id' 'chem_comp_assembly' yes
'_pdbx_poly_seq_scheme.entry_id' 'pdbx_poly_seq_scheme' yes
'_pdbx_nonpoly_scheme.entry_id' 'pdbx_nonpoly_scheme' yes
'_atom_type.entry_id' 'atom_type' yes
'_atom.entry_id' 'atom' yes
'_bond.entry_id' 'bond' yes
'_deleted_atom.entry_id' 'deleted_atom' yes
'_assembly_bio_function.entry_id' 'assembly_bio_function' yes
'_angle.entry_id' 'angle' yes
'_torsion_angle.entry_id' 'torsion_angle' yes
'_assembly_segment.entry_id' 'assembly_segment' yes
'_assembly_segment_description.entry_id' 'assembly_segment_description' yes
'_assembly_keyword.entry_id' 'assembly_keyword' yes
'_assembly_citation.entry_id' 'assembly_citation' yes
'_assembly_annotation_list.entry_id' 'assembly_annotation_list' yes
'_author_annotation.entry_id' 'author_annotation' yes
'_assembly_subsystem.entry_id' 'assembly_subsystem' yes
'_subsystem_common_name.entry_id' 'subsystem_common_name' yes
'_subsystem_type.entry_id' 'subsystem_type' yes
'_subsystem_component.entry_id' 'subsystem_component' yes
'_subsystem_keyword.entry_id' 'subsystem_keyword' yes
'_subsystem_biological_function.entry_id' 'subsystem_biological_function' yes
'_subsystem_db_link.entry_id' 'subsystem_db_link' yes
'_subsystem_citation.entry_id' 'subsystem_citation' yes
'_entity.entry_id' 'entity' yes
'_entity_db_link.entry_id' 'entity_db_link' yes
'_entity_biological_function.entry_id' 'entity_biological_function' yes
'_entity_common_name.entry_id' 'entity_common_name' yes
'_entity_systematic_name.entry_id' 'entity_systematic_name' yes
'_entity_keyword.entry_id' 'entity_keyword' yes
'_entity_comp_index.entry_id' 'entity_comp_index' yes
'_entity_poly_seq.entry_id' 'entity_poly_seq' yes
'_entity_chimera_segment.entry_id' 'entity_chimera_segment' yes
'_entity_comp_index_alt.entry_id' 'entity_comp_index_alt' yes
'_entity_bond.entry_id' 'entity_bond' yes
'_entity_citation.entry_id' 'entity_citation' yes
'_entity_natural_src_list.entry_id' 'entity_natural_src_list' yes
'_entity_natural_src.entry_id' 'entity_natural_src' yes
'_natural_source_db.entry_id' 'natural_source_db' yes
'_entity_experimental_src_list.entry_id' 'entity_experimental_src_list' yes
'_entity_experimental_src.entry_id' 'entity_experimental_src' yes
'_chem_comp.entry_id' 'chem_comp' yes
'_chem_comp_common_name.entry_id' 'chem_comp_common_name' yes
'_chem_comp_systematic_name.entry_id' 'chem_comp_systematic_name' yes
'_chem_comp_smiles.entry_id' 'chem_comp_smiles' yes
'_chem_comp_keyword.entry_id' 'chem_comp_keyword' yes
'_characteristic.entry_id' 'characteristic' yes
'_chem_comp_atom.entry_id' 'chem_comp_atom' yes
'_atom_nomenclature.entry_id' 'atom_nomenclature' yes
'_chem_comp_bond.entry_id' 'chem_comp_bond' yes
'_chem_comp_tor.entry_id' 'chem_comp_tor' yes
'_chem_comp_angle.entry_id' 'chem_comp_angle' yes
'_chem_comp_db_link.entry_id' 'chem_comp_db_link' yes
'_chem_comp_citation.entry_id' 'chem_comp_citation' yes
'_sample.entry_id' 'sample' yes
'_sample_component.entry_id' 'sample_component' yes
'_sample_component_atom_isotope.entry_id' 'sample_component_atom_isotope' yes
'_sample_citation.entry_id' 'sample_citation' yes
'_sample_condition_list.entry_id' 'sample_condition_list' yes
'_sample_condition_variable.entry_id' 'sample_condition_variable' yes
'_sample_condition_citation.entry_id' 'sample_condition_citation' yes
'_entity_purity_list.entry_id' 'entity_purity_list' yes
'_entity_purity.entry_id' 'entity_purity' yes
'_entity_purity_citation.entry_id' 'entity_purity_citation' yes
'_software.entry_id' 'software' yes
'_task.entry_id' 'task' yes
'_vendor.entry_id' 'vendor' yes
'_software_citation.entry_id' 'software_citation' yes
'_method.entry_id' 'method' yes
'_method_file.entry_id' 'method_file' yes
'_method_param.entry_id' 'method_param' yes
'_method_citation.entry_id' 'method_citation' yes
'_nmr_spectrometer.entry_id' 'nmr_spectrometer' yes
'_nmr_spectrometer_citation.entry_id' 'nmr_spectrometer_citation' yes
'_nmr_spectrometer_list.entry_id' 'nmr_spectrometer_list' yes
'_nmr_spectrometer_view.entry_id' 'nmr_spectrometer_view' yes
'_nmr_spectrometer_probe.entry_id' 'nmr_spectrometer_probe' yes
'_nmr_probe.entry_id' 'nmr_probe' yes
'_nmr_spectrometer_probe_citation.entry_id' 'nmr_spectrometer_probe_citation' yes
'_experiment_list.entry_id' 'experiment_list' yes
'_experiment.entry_id' 'experiment' yes
'_nmr_spec_expt.entry_id' 'nmr_spec_expt' yes
'_nmr_experiment_file.entry_id' 'nmr_experiment_file' yes
'_spectral_acq_param.entry_id' 'spectral_acq_param' yes
'_recoupling_pulse_sequence.entry_id' 'recoupling_pulse_sequence' yes
'_decoupling_pulse_sequence.entry_id' 'decoupling_pulse_sequence' yes
'_nmr_experiment_citation.entry_id' 'nmr_experiment_citation' yes
'_nmr_spectral_processing.entry_id' 'nmr_spectral_processing' yes
'_nmr_spectral_proc_software.entry_id' 'nmr_spectral_proc_software' yes
'_spectral_processing_param.entry_id' 'spectral_processing_param' yes
'_computer.entry_id' 'computer' yes
'_computer_citation.entry_id' 'computer_citation' yes
'_chem_shift_reference.entry_id' 'chem_shift_reference' yes
'_chem_shift_ref.entry_id' 'chem_shift_ref' yes
'_assigned_chem_shift_list.entry_id' 'assigned_chem_shift_list' yes
'_chem_shift_experiment.entry_id' 'chem_shift_experiment' yes
'_systematic_chem_shift_offset.entry_id' 'systematic_chem_shift_offset' yes
'_chem_shift_software.entry_id' 'chem_shift_software' yes
'_atom_chem_shift.entry_id' 'atom_chem_shift' yes
'_ambiguous_atom_chem_shift.entry_id' 'ambiguous_atom_chem_shift' yes
'_coupling_constant_list.entry_id' 'coupling_constant_list' yes
'_coupling_constant_experiment.entry_id' 'coupling_constant_experiment' yes
'_coupling_constant_software.entry_id' 'coupling_constant_software' yes
'_coupling_constant.entry_id' 'coupling_constant' yes
'_spectral_peak_list.entry_id' 'spectral_peak_list' yes
'_spectral_dim.entry_id' 'spectral_dim' yes
'_spectral_peak_software.entry_id' 'spectral_peak_software' yes
'_peak.entry_id' 'peak' yes
'_peak_general_char.entry_id' 'peak_general_char' yes
'_peak_char.entry_id' 'peak_char' yes
'_peak_contribution.entry_id' 'peak_contribution' yes
'_assigned_peak_chem_shift.entry_id' 'assigned_peak_chem_shift' yes
'_resonance_linker_list.entry_id' 'resonance_linker_list' yes
'_resonance.entry_id' 'resonance' yes
'_resonance_assignment.entry_id' 'resonance_assignment' yes
'_spin_system.entry_id' 'spin_system' yes
'_chem_shift_isotope_effect_list.entry_id' 'chem_shift_isotope_effect_list' yes
'_isotope_effect_experiment.entry_id' 'isotope_effect_experiment' yes
'_isotope_effect_software.entry_id' 'isotope_effect_software' yes
'_isotope_effect.entry_id' 'isotope_effect' yes
'_isotope_label_pattern.entry_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift_diff.entry_id' 'mol_interaction_chem_shift_diff' yes
'_mol_interaction_diff_experiment.entry_id' 'mol_interaction_diff_experiment' yes
'_mol_interaction_diff_software.entry_id' 'mol_interaction_diff_software' yes
'_mol_interaction_chem_shift.entry_id' 'mol_interaction_chem_shift' yes
'_chem_shift_anisotropy.entry_id' 'chem_shift_anisotropy' yes
'_cs_anisotropy_experiment.entry_id' 'cs_anisotropy_experiment' yes
'_cs_anisotropy_software.entry_id' 'cs_anisotropy_software' yes
'_cs_anisotropy.entry_id' 'cs_anisotropy' yes
'_chem_shifts_calc_type.entry_id' 'chem_shifts_calc_type' yes
'_chem_shifts_calc_software.entry_id' 'chem_shifts_calc_software' yes
'_chem_shielding_tensor_list.entry_id' 'chem_shielding_tensor_list' yes
'_chem_shielding_tensor.entry_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift_list.entry_id' 'theoretical_chem_shift_list' yes
'_theoretical_chem_shift.entry_id' 'theoretical_chem_shift' yes
'_rdc_list.entry_id' 'rdc_list' yes
'_rdc_experiment.entry_id' 'rdc_experiment' yes
'_rdc_software.entry_id' 'rdc_software' yes
'_rdc.entry_id' 'rdc' yes
'_dipolar_coupling_list.entry_id' 'dipolar_coupling_list' yes
'_dipolar_coupling_experiment.entry_id' 'dipolar_coupling_experiment' yes
'_dipolar_coupling_software.entry_id' 'dipolar_coupling_software' yes
'_dipolar_coupling.entry_id' 'dipolar_coupling' yes
'_spectral_density_list.entry_id' 'spectral_density_list' yes
'_spectral_density_experiment.entry_id' 'spectral_density_experiment' yes
'_spectral_density_software.entry_id' 'spectral_density_software' yes
'_spectral_density.entry_id' 'spectral_density' yes
'_other_data_type_list.entry_id' 'other_data_type_list' yes
'_other_data_experiment.entry_id' 'other_data_experiment' yes
'_other_data_software.entry_id' 'other_data_software' yes
'_other_data.entry_id' 'other_data' yes
'_h_exch_rate_list.entry_id' 'h_exch_rate_list' yes
'_h_exch_rate_experiment.entry_id' 'h_exch_rate_experiment' yes
'_h_exch_rate_software.entry_id' 'h_exch_rate_software' yes
'_h_exch_rate.entry_id' 'h_exch_rate' yes
'_h_exch_protection_factor_list.entry_id' 'h_exch_protection_factor_list' yes
'_h_exch_protection_fact_experiment.entry_id' 'h_exch_protection_fact_experiment' yes
'_h_exch_protect_fact_software.entry_id' 'h_exch_protect_fact_software' yes
'_h_exch_protection_factor.entry_id' 'h_exch_protection_factor' yes
'_homonucl_noe_list.entry_id' 'homonucl_noe_list' yes
'_homonucl_noe_experiment.entry_id' 'homonucl_noe_experiment' yes
'_homonucl_noe_software.entry_id' 'homonucl_noe_software' yes
'_homonucl_noe.entry_id' 'homonucl_noe' yes
'_heteronucl_noe_list.entry_id' 'heteronucl_noe_list' yes
'_heteronucl_noe_experiment.entry_id' 'heteronucl_noe_experiment' yes
'_heteronucl_noe_software.entry_id' 'heteronucl_noe_software' yes
'_heteronucl_noe.entry_id' 'heteronucl_noe' yes
'_heteronucl_t1_list.entry_id' 'heteronucl_t1_list' yes
'_heteronucl_t1_experiment.entry_id' 'heteronucl_t1_experiment' yes
'_heteronucl_t1_software.entry_id' 'heteronucl_t1_software' yes
'_t1.entry_id' 't1' yes
'_heteronucl_t1rho_list.entry_id' 'heteronucl_t1rho_list' yes
'_heteronucl_t1rho_experiment.entry_id' 'heteronucl_t1rho_experiment' yes
'_heteronucl_t1rho_software.entry_id' 'heteronucl_t1rho_software' yes
'_t1rho.entry_id' 't1rho' yes
'_heteronucl_t2_list.entry_id' 'heteronucl_t2_list' yes
'_heteronucl_t2_experiment.entry_id' 'heteronucl_t2_experiment' yes
'_heteronucl_t2_software.entry_id' 'heteronucl_t2_software' yes
'_t2.entry_id' 't2' yes
'_dipole_dipole_relax_list.entry_id' 'dipole_dipole_relax_list' yes
'_dipole_dipole_relax_experiment.entry_id' 'dipole_dipole_relax_experiment' yes
'_dipole_dipole_relax_software.entry_id' 'dipole_dipole_relax_software' yes
'_dipole_dipole_relax.entry_id' 'dipole_dipole_relax' yes
'_cross_correlation_dd_list.entry_id' 'cross_correlation_dd_list' yes
'_cross_correlation_dd_experiment.entry_id' 'cross_correlation_dd_experiment' yes
'_cross_correlation_dd_software.entry_id' 'cross_correlation_dd_software' yes
'_cross_correlation_dd.entry_id' 'cross_correlation_dd' yes
'_cross_correlation_d_csa_list.entry_id' 'cross_correlation_d_csa_list' yes
'_cross_correlation_d_csa_experiment.entry_id' 'cross_correlation_d_csa_experiment' yes
'_cross_correlation_d_csa_software.entry_id' 'cross_correlation_d_csa_software' yes
'_cross_correlation_d_csa.entry_id' 'cross_correlation_d_csa' yes
'_order_parameter_list.entry_id' 'order_parameter_list' yes
'_order_parameter_experiment.entry_id' 'order_parameter_experiment' yes
'_order_parameter_software.entry_id' 'order_parameter_software' yes
'_order_param.entry_id' 'order_param' yes
'_ph_titration_list.entry_id' 'ph_titration_list' yes
'_ph_titration_experiment.entry_id' 'ph_titration_experiment' yes
'_ph_titration_software.entry_id' 'ph_titration_software' yes
'_ph_titr_result.entry_id' 'ph_titr_result' yes
'_ph_param_list.entry_id' 'ph_param_list' yes
'_ph_param.entry_id' 'ph_param' yes
'_d_h_fractionation_factor_list.entry_id' 'd_h_fractionation_factor_list' yes
'_d_h_fract_factor_experiment.entry_id' 'd_h_fract_factor_experiment' yes
'_d_h_fract_factor_software.entry_id' 'd_h_fract_factor_software' yes
'_d_h_fractionation_factor.entry_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_list.entry_id' 'deduced_secd_struct_list' yes
'_deduced_secd_struct_software.entry_id' 'deduced_secd_struct_software' yes
'_deduced_secd_struct_experiment.entry_id' 'deduced_secd_struct_experiment' yes
'_deduced_secd_struct_exptl.entry_id' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_feature.entry_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond_list.entry_id' 'deduced_h_bond_list' yes
'_deduced_h_bond_software.entry_id' 'deduced_h_bond_software' yes
'_deduced_h_bond_experiment.entry_id' 'deduced_h_bond_experiment' yes
'_deduced_h_bond.entry_id' 'deduced_h_bond' yes
'_conformer_stat_list.entry_id' 'conformer_stat_list' yes
'_conformer_stat_list_ens.entry_id' 'conformer_stat_list_ens' yes
'_conformer_stat_list_rep.entry_id' 'conformer_stat_list_rep' yes
'_conf_stats_software.entry_id' 'conf_stats_software' yes
'_conformer_family_coord_set.entry_id' 'conformer_family_coord_set' yes
'_conformer_family_refinement.entry_id' 'conformer_family_refinement' yes
'_conformer_family_software.entry_id' 'conformer_family_software' yes
'_energetic_penalty_function.entry_id' 'energetic_penalty_function' yes
'_conformer_family_coord_set_expt.entry_id' 'conformer_family_coord_set_expt' yes
'_conf_family_coord_set_constr_list.entry_id' 'conf_family_coord_set_constr_list' yes
'_struct_image.entry_id' 'struct_image' yes
'_atom_site.entry_id' 'atom_site' yes
'_atom_sites_footnote.entry_id' 'atom_sites_footnote' yes
'_representative_conformer.entry_id' 'representative_conformer' yes
'_rep_conf_refinement.entry_id' 'rep_conf_refinement' yes
'_rep_conf_software.entry_id' 'rep_conf_software' yes
'_terminal_residue.entry_id' 'terminal_residue' yes
'_rep_conf.entry_id' 'rep_conf' yes
'_rep_coordinate_details.entry_id' 'rep_coordinate_details' yes
'_constraint_stat_list.entry_id' 'constraint_stat_list' yes
'_constraint_stat_list_ens.entry_id' 'constraint_stat_list_ens' yes
'_constraint_stat_list_rep.entry_id' 'constraint_stat_list_rep' yes
'_constraint_stats_constr_list.entry_id' 'constraint_stats_constr_list' yes
'_constraint_file.entry_id' 'constraint_file' yes
'_force_constant_list.entry_id' 'force_constant_list' yes
'_force_constant_software.entry_id' 'force_constant_software' yes
'_force_constant.entry_id' 'force_constant' yes
'_angular_order_parameter_list.entry_id' 'angular_order_parameter_list' yes
'_angular_order_param.entry_id' 'angular_order_param' yes
'_tertiary_struct_element_list.entry_id' 'tertiary_struct_element_list' yes
'_tertiary_struct_element_sel.entry_id' 'tertiary_struct_element_sel' yes
'_tertiary_struct.entry_id' 'tertiary_struct' yes
'_secondary_struct_list.entry_id' 'secondary_struct_list' yes
'_secondary_struct_sel.entry_id' 'secondary_struct_sel' yes
'_secondary_struct.entry_id' 'secondary_struct' yes
'_bond_annotation_list.entry_id' 'bond_annotation_list' yes
'_bond_annotation.entry_id' 'bond_annotation' yes
'_bond_observed_conformer.entry_id' 'bond_observed_conformer' yes
'_structure_interaction_list.entry_id' 'structure_interaction_list' yes
'_structure_interaction.entry_id' 'structure_interaction' yes
'_observed_conformer.entry_id' 'observed_conformer' yes
'_other_struct_feature_list.entry_id' 'other_struct_feature_list' yes
'_other_struct_feature.entry_id' 'other_struct_feature' yes
'_distance_constraint_list.entry_id' 'distance_constraint_list' yes
'_distance_constraint_software.entry_id' 'distance_constraint_software' yes
'_dist_constr_software_setting.entry_id' 'dist_constr_software_setting' yes
'_distance_constraint_expt.entry_id' 'distance_constraint_expt' yes
'_dist_constraint_tree.entry_id' 'dist_constraint_tree' yes
'_dist_constraint.entry_id' 'dist_constraint' yes
'_dist_constraint_value.entry_id' 'dist_constraint_value' yes
'_dist_constraint_comment_org.entry_id' 'dist_constraint_comment_org' yes
'_dist_constraint_parse_err.entry_id' 'dist_constraint_parse_err' yes
'_dist_constraint_parse_file.entry_id' 'dist_constraint_parse_file' yes
'_dist_constraint_conv_err.entry_id' 'dist_constraint_conv_err' yes
'_floating_chirality_assign.entry_id' 'floating_chirality_assign' yes
'_floating_chirality_software.entry_id' 'floating_chirality_software' yes
'_floating_chirality.entry_id' 'floating_chirality' yes
'_torsion_angle_constraint_list.entry_id' 'torsion_angle_constraint_list' yes
'_torsion_angle_constraint_software.entry_id' 'torsion_angle_constraint_software' yes
'_torsion_angle_constraints_expt.entry_id' 'torsion_angle_constraints_expt' yes
'_karplus_equation.entry_id' 'karplus_equation' yes
'_torsion_angle_constraint.entry_id' 'torsion_angle_constraint' yes
'_ta_constraint_comment_org.entry_id' 'ta_constraint_comment_org' yes
'_ta_constraint_parse_err.entry_id' 'ta_constraint_parse_err' yes
'_ta_constraint_parse_file.entry_id' 'ta_constraint_parse_file' yes
'_ta_constraint_conv_err.entry_id' 'ta_constraint_conv_err' yes
'_rdc_constraint_list.entry_id' 'rdc_constraint_list' yes
'_rdc_constraint_software.entry_id' 'rdc_constraint_software' yes
'_rdc_constraint_expt.entry_id' 'rdc_constraint_expt' yes
'_rdc_constraint.entry_id' 'rdc_constraint' yes
'_rdc_constraint_comment_org.entry_id' 'rdc_constraint_comment_org' yes
'_rdc_constraint_parse_err.entry_id' 'rdc_constraint_parse_err' yes
'_rdc_constraint_parse_file.entry_id' 'rdc_constraint_parse_file' yes
'_rdc_constraint_conv_err.entry_id' 'rdc_constraint_conv_err' yes
'_j_three_bond_constraint_list.entry_id' 'j_three_bond_constraint_list' yes
'_j_three_bond_constraint_software.entry_id' 'j_three_bond_constraint_software' yes
'_j_three_bond_constraint_expt.entry_id' 'j_three_bond_constraint_expt' yes
'_j_three_bond_constraint.entry_id' 'j_three_bond_constraint' yes
'_ca_cb_constraint_list.entry_id' 'ca_cb_constraint_list' yes
'_ca_cb_constraint_software.entry_id' 'ca_cb_constraint_software' yes
'_ca_cb_constraint_expt.entry_id' 'ca_cb_constraint_expt' yes
'_ca_cb_constraint.entry_id' 'ca_cb_constraint' yes
'_h_chem_shift_constraint_list.entry_id' 'h_chem_shift_constraint_list' yes
'_h_chem_shift_constraint_software.entry_id' 'h_chem_shift_constraint_software' yes
'_h_chem_shift_constraint_expt.entry_id' 'h_chem_shift_constraint_expt' yes
'_h_chem_shift_constraint.entry_id' 'h_chem_shift_constraint' yes
'_other_constraint_list.entry_id' 'other_constraint_list' yes
'_other_constraint_expt.entry_id' 'other_constraint_expt' yes
'_other_constraint_software.entry_id' 'other_constraint_software' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_study_list.entry_id' '_entry.id'
'_study.entry_id' '_entry.id'
'_study_keyword.entry_id' '_entry.id'
'_study_entry_list.entry_id' '_entry.id'
'_entry_proc_cycle.entry_id' '_entry.id'
'_entry_prerelease_seq.entry_id' '_entry.id'
'_contact_person.entry_id' '_entry.id'
'_entry_author.entry_id' '_entry.id'
'_sg_project.entry_id' '_entry.id'
'_entry_src.entry_id' '_entry.id'
'_struct_keywords.entry_id' '_entry.id'
'_data_set.entry_id' '_entry.id'
'_datum.entry_id' '_entry.id'
'_release.entry_id' '_entry.id'
'_related_entries.entry_id' '_entry.id'
'_citation.entry_id' '_entry.id'
'_citation_author.entry_id' '_entry.id'
'_citation_keyword.entry_id' '_entry.id'
'_citation_editor.entry_id' '_entry.id'
'_assembly.entry_id' '_entry.id'
'_assembly_type.entry_id' '_entry.id'
'_entity_assembly.entry_id' '_entry.id'
'_struct_asym.entry_id' '_entry.id'
'_assembly_db_link.entry_id' '_entry.id'
'_assembly_common_name.entry_id' '_entry.id'
'_assembly_systematic_name.entry_id' '_entry.id'
'_assembly_interaction.entry_id' '_entry.id'
'_chem_comp_assembly.entry_id' '_entry.id'
'_pdbx_poly_seq_scheme.entry_id' '_entry.id'
'_pdbx_nonpoly_scheme.entry_id' '_entry.id'
'_atom_type.entry_id' '_entry.id'
'_atom.entry_id' '_entry.id'
'_bond.entry_id' '_entry.id'
'_deleted_atom.entry_id' '_entry.id'
'_assembly_bio_function.entry_id' '_entry.id'
'_angle.entry_id' '_entry.id'
'_torsion_angle.entry_id' '_entry.id'
'_assembly_segment.entry_id' '_entry.id'
'_assembly_segment_description.entry_id' '_entry.id'
'_assembly_keyword.entry_id' '_entry.id'
'_assembly_citation.entry_id' '_entry.id'
'_assembly_annotation_list.entry_id' '_entry.id'
'_author_annotation.entry_id' '_entry.id'
'_assembly_subsystem.entry_id' '_entry.id'
'_subsystem_common_name.entry_id' '_entry.id'
'_subsystem_type.entry_id' '_entry.id'
'_subsystem_component.entry_id' '_entry.id'
'_subsystem_keyword.entry_id' '_entry.id'
'_subsystem_biological_function.entry_id' '_entry.id'
'_subsystem_db_link.entry_id' '_entry.id'
'_subsystem_citation.entry_id' '_entry.id'
'_entity.entry_id' '_entry.id'
'_entity_db_link.entry_id' '_entry.id'
'_entity_biological_function.entry_id' '_entry.id'
'_entity_common_name.entry_id' '_entry.id'
'_entity_systematic_name.entry_id' '_entry.id'
'_entity_keyword.entry_id' '_entry.id'
'_entity_comp_index.entry_id' '_entry.id'
'_entity_poly_seq.entry_id' '_entry.id'
'_entity_chimera_segment.entry_id' '_entry.id'
'_entity_comp_index_alt.entry_id' '_entry.id'
'_entity_bond.entry_id' '_entry.id'
'_entity_citation.entry_id' '_entry.id'
'_entity_natural_src_list.entry_id' '_entry.id'
'_entity_natural_src.entry_id' '_entry.id'
'_natural_source_db.entry_id' '_entry.id'
'_entity_experimental_src_list.entry_id' '_entry.id'
'_entity_experimental_src.entry_id' '_entry.id'
'_chem_comp.entry_id' '_entry.id'
'_chem_comp_common_name.entry_id' '_entry.id'
'_chem_comp_systematic_name.entry_id' '_entry.id'
'_chem_comp_smiles.entry_id' '_entry.id'
'_chem_comp_keyword.entry_id' '_entry.id'
'_characteristic.entry_id' '_entry.id'
'_chem_comp_atom.entry_id' '_entry.id'
'_atom_nomenclature.entry_id' '_entry.id'
'_chem_comp_bond.entry_id' '_entry.id'
'_chem_comp_tor.entry_id' '_entry.id'
'_chem_comp_angle.entry_id' '_entry.id'
'_chem_comp_db_link.entry_id' '_entry.id'
'_chem_comp_citation.entry_id' '_entry.id'
'_sample.entry_id' '_entry.id'
'_sample_component.entry_id' '_entry.id'
'_sample_component_atom_isotope.entry_id' '_entry.id'
'_sample_citation.entry_id' '_entry.id'
'_sample_condition_list.entry_id' '_entry.id'
'_sample_condition_variable.entry_id' '_entry.id'
'_sample_condition_citation.entry_id' '_entry.id'
'_entity_purity_list.entry_id' '_entry.id'
'_entity_purity.entry_id' '_entry.id'
'_entity_purity_citation.entry_id' '_entry.id'
'_software.entry_id' '_entry.id'
'_task.entry_id' '_entry.id'
'_vendor.entry_id' '_entry.id'
'_software_citation.entry_id' '_entry.id'
'_method.entry_id' '_entry.id'
'_method_file.entry_id' '_entry.id'
'_method_param.entry_id' '_entry.id'
'_method_citation.entry_id' '_entry.id'
'_nmr_spectrometer.entry_id' '_entry.id'
'_nmr_spectrometer_citation.entry_id' '_entry.id'
'_nmr_spectrometer_list.entry_id' '_entry.id'
'_nmr_spectrometer_view.entry_id' '_entry.id'
'_nmr_spectrometer_probe.entry_id' '_entry.id'
'_nmr_probe.entry_id' '_entry.id'
'_nmr_spectrometer_probe_citation.entry_id' '_entry.id'
'_experiment_list.entry_id' '_entry.id'
'_experiment.entry_id' '_entry.id'
'_nmr_spec_expt.entry_id' '_entry.id'
'_nmr_experiment_file.entry_id' '_entry.id'
'_spectral_acq_param.entry_id' '_entry.id'
'_recoupling_pulse_sequence.entry_id' '_entry.id'
'_decoupling_pulse_sequence.entry_id' '_entry.id'
'_nmr_experiment_citation.entry_id' '_entry.id'
'_nmr_spectral_processing.entry_id' '_entry.id'
'_nmr_spectral_proc_software.entry_id' '_entry.id'
'_spectral_processing_param.entry_id' '_entry.id'
'_computer.entry_id' '_entry.id'
'_computer_citation.entry_id' '_entry.id'
'_chem_shift_reference.entry_id' '_entry.id'
'_chem_shift_ref.entry_id' '_entry.id'
'_assigned_chem_shift_list.entry_id' '_entry.id'
'_chem_shift_experiment.entry_id' '_entry.id'
'_systematic_chem_shift_offset.entry_id' '_entry.id'
'_chem_shift_software.entry_id' '_entry.id'
'_atom_chem_shift.entry_id' '_entry.id'
'_ambiguous_atom_chem_shift.entry_id' '_entry.id'
'_coupling_constant_list.entry_id' '_entry.id'
'_coupling_constant_experiment.entry_id' '_entry.id'
'_coupling_constant_software.entry_id' '_entry.id'
'_coupling_constant.entry_id' '_entry.id'
'_spectral_peak_list.entry_id' '_entry.id'
'_spectral_dim.entry_id' '_entry.id'
'_spectral_peak_software.entry_id' '_entry.id'
'_peak.entry_id' '_entry.id'
'_peak_general_char.entry_id' '_entry.id'
'_peak_char.entry_id' '_entry.id'
'_peak_contribution.entry_id' '_entry.id'
'_assigned_peak_chem_shift.entry_id' '_entry.id'
'_resonance_linker_list.entry_id' '_entry.id'
'_resonance.entry_id' '_entry.id'
'_resonance_assignment.entry_id' '_entry.id'
'_spin_system.entry_id' '_entry.id'
'_chem_shift_isotope_effect_list.entry_id' '_entry.id'
'_isotope_effect_experiment.entry_id' '_entry.id'
'_isotope_effect_software.entry_id' '_entry.id'
'_isotope_effect.entry_id' '_entry.id'
'_isotope_label_pattern.entry_id' '_entry.id'
'_mol_interaction_chem_shift_diff.entry_id' '_entry.id'
'_mol_interaction_diff_experiment.entry_id' '_entry.id'
'_mol_interaction_diff_software.entry_id' '_entry.id'
'_mol_interaction_chem_shift.entry_id' '_entry.id'
'_chem_shift_anisotropy.entry_id' '_entry.id'
'_cs_anisotropy_experiment.entry_id' '_entry.id'
'_cs_anisotropy_software.entry_id' '_entry.id'
'_cs_anisotropy.entry_id' '_entry.id'
'_chem_shifts_calc_type.entry_id' '_entry.id'
'_chem_shifts_calc_software.entry_id' '_entry.id'
'_chem_shielding_tensor_list.entry_id' '_entry.id'
'_chem_shielding_tensor.entry_id' '_entry.id'
'_theoretical_chem_shift_list.entry_id' '_entry.id'
'_theoretical_chem_shift.entry_id' '_entry.id'
'_rdc_list.entry_id' '_entry.id'
'_rdc_experiment.entry_id' '_entry.id'
'_rdc_software.entry_id' '_entry.id'
'_rdc.entry_id' '_entry.id'
'_dipolar_coupling_list.entry_id' '_entry.id'
'_dipolar_coupling_experiment.entry_id' '_entry.id'
'_dipolar_coupling_software.entry_id' '_entry.id'
'_dipolar_coupling.entry_id' '_entry.id'
'_spectral_density_list.entry_id' '_entry.id'
'_spectral_density_experiment.entry_id' '_entry.id'
'_spectral_density_software.entry_id' '_entry.id'
'_spectral_density.entry_id' '_entry.id'
'_other_data_type_list.entry_id' '_entry.id'
'_other_data_experiment.entry_id' '_entry.id'
'_other_data_software.entry_id' '_entry.id'
'_other_data.entry_id' '_entry.id'
'_h_exch_rate_list.entry_id' '_entry.id'
'_h_exch_rate_experiment.entry_id' '_entry.id'
'_h_exch_rate_software.entry_id' '_entry.id'
'_h_exch_rate.entry_id' '_entry.id'
'_h_exch_protection_factor_list.entry_id' '_entry.id'
'_h_exch_protection_fact_experiment.entry_id' '_entry.id'
'_h_exch_protect_fact_software.entry_id' '_entry.id'
'_h_exch_protection_factor.entry_id' '_entry.id'
'_homonucl_noe_list.entry_id' '_entry.id'
'_homonucl_noe_experiment.entry_id' '_entry.id'
'_homonucl_noe_software.entry_id' '_entry.id'
'_homonucl_noe.entry_id' '_entry.id'
'_heteronucl_noe_list.entry_id' '_entry.id'
'_heteronucl_noe_experiment.entry_id' '_entry.id'
'_heteronucl_noe_software.entry_id' '_entry.id'
'_heteronucl_noe.entry_id' '_entry.id'
'_heteronucl_t1_list.entry_id' '_entry.id'
'_heteronucl_t1_experiment.entry_id' '_entry.id'
'_heteronucl_t1_software.entry_id' '_entry.id'
'_t1.entry_id' '_entry.id'
'_heteronucl_t1rho_list.entry_id' '_entry.id'
'_heteronucl_t1rho_experiment.entry_id' '_entry.id'
'_heteronucl_t1rho_software.entry_id' '_entry.id'
'_t1rho.entry_id' '_entry.id'
'_heteronucl_t2_list.entry_id' '_entry.id'
'_heteronucl_t2_experiment.entry_id' '_entry.id'
'_heteronucl_t2_software.entry_id' '_entry.id'
'_t2.entry_id' '_entry.id'
'_dipole_dipole_relax_list.entry_id' '_entry.id'
'_dipole_dipole_relax_experiment.entry_id' '_entry.id'
'_dipole_dipole_relax_software.entry_id' '_entry.id'
'_dipole_dipole_relax.entry_id' '_entry.id'
'_cross_correlation_dd_list.entry_id' '_entry.id'
'_cross_correlation_dd_experiment.entry_id' '_entry.id'
'_cross_correlation_dd_software.entry_id' '_entry.id'
'_cross_correlation_dd.entry_id' '_entry.id'
'_cross_correlation_d_csa_list.entry_id' '_entry.id'
'_cross_correlation_d_csa_experiment.entry_id' '_entry.id'
'_cross_correlation_d_csa_software.entry_id' '_entry.id'
'_cross_correlation_d_csa.entry_id' '_entry.id'
'_order_parameter_list.entry_id' '_entry.id'
'_order_parameter_experiment.entry_id' '_entry.id'
'_order_parameter_software.entry_id' '_entry.id'
'_order_param.entry_id' '_entry.id'
'_ph_titration_list.entry_id' '_entry.id'
'_ph_titration_experiment.entry_id' '_entry.id'
'_ph_titration_software.entry_id' '_entry.id'
'_ph_titr_result.entry_id' '_entry.id'
'_ph_param_list.entry_id' '_entry.id'
'_ph_param.entry_id' '_entry.id'
'_d_h_fractionation_factor_list.entry_id' '_entry.id'
'_d_h_fract_factor_experiment.entry_id' '_entry.id'
'_d_h_fract_factor_software.entry_id' '_entry.id'
'_d_h_fractionation_factor.entry_id' '_entry.id'
'_deduced_secd_struct_list.entry_id' '_entry.id'
'_deduced_secd_struct_software.entry_id' '_entry.id'
'_deduced_secd_struct_experiment.entry_id' '_entry.id'
'_deduced_secd_struct_exptl.entry_id' '_entry.id'
'_deduced_secd_struct_feature.entry_id' '_entry.id'
'_deduced_h_bond_list.entry_id' '_entry.id'
'_deduced_h_bond_software.entry_id' '_entry.id'
'_deduced_h_bond_experiment.entry_id' '_entry.id'
'_deduced_h_bond.entry_id' '_entry.id'
'_conformer_stat_list.entry_id' '_entry.id'
'_conformer_stat_list_ens.entry_id' '_entry.id'
'_conformer_stat_list_rep.entry_id' '_entry.id'
'_conf_stats_software.entry_id' '_entry.id'
'_conformer_family_coord_set.entry_id' '_entry.id'
'_conformer_family_refinement.entry_id' '_entry.id'
'_conformer_family_software.entry_id' '_entry.id'
'_energetic_penalty_function.entry_id' '_entry.id'
'_conformer_family_coord_set_expt.entry_id' '_entry.id'
'_conf_family_coord_set_constr_list.entry_id' '_entry.id'
'_struct_image.entry_id' '_entry.id'
'_atom_site.entry_id' '_entry.id'
'_atom_sites_footnote.entry_id' '_entry.id'
'_representative_conformer.entry_id' '_entry.id'
'_rep_conf_refinement.entry_id' '_entry.id'
'_rep_conf_software.entry_id' '_entry.id'
'_terminal_residue.entry_id' '_entry.id'
'_rep_conf.entry_id' '_entry.id'
'_rep_coordinate_details.entry_id' '_entry.id'
'_constraint_stat_list.entry_id' '_entry.id'
'_constraint_stat_list_ens.entry_id' '_entry.id'
'_constraint_stat_list_rep.entry_id' '_entry.id'
'_constraint_stats_constr_list.entry_id' '_entry.id'
'_constraint_file.entry_id' '_entry.id'
'_force_constant_list.entry_id' '_entry.id'
'_force_constant_software.entry_id' '_entry.id'
'_force_constant.entry_id' '_entry.id'
'_angular_order_parameter_list.entry_id' '_entry.id'
'_angular_order_param.entry_id' '_entry.id'
'_tertiary_struct_element_list.entry_id' '_entry.id'
'_tertiary_struct_element_sel.entry_id' '_entry.id'
'_tertiary_struct.entry_id' '_entry.id'
'_secondary_struct_list.entry_id' '_entry.id'
'_secondary_struct_sel.entry_id' '_entry.id'
'_secondary_struct.entry_id' '_entry.id'
'_bond_annotation_list.entry_id' '_entry.id'
'_bond_annotation.entry_id' '_entry.id'
'_bond_observed_conformer.entry_id' '_entry.id'
'_structure_interaction_list.entry_id' '_entry.id'
'_structure_interaction.entry_id' '_entry.id'
'_observed_conformer.entry_id' '_entry.id'
'_other_struct_feature_list.entry_id' '_entry.id'
'_other_struct_feature.entry_id' '_entry.id'
'_distance_constraint_list.entry_id' '_entry.id'
'_distance_constraint_software.entry_id' '_entry.id'
'_dist_constr_software_setting.entry_id' '_entry.id'
'_distance_constraint_expt.entry_id' '_entry.id'
'_dist_constraint_tree.entry_id' '_entry.id'
'_dist_constraint.entry_id' '_entry.id'
'_dist_constraint_value.entry_id' '_entry.id'
'_dist_constraint_comment_org.entry_id' '_entry.id'
'_dist_constraint_parse_err.entry_id' '_entry.id'
'_dist_constraint_parse_file.entry_id' '_entry.id'
'_dist_constraint_conv_err.entry_id' '_entry.id'
'_floating_chirality_assign.entry_id' '_entry.id'
'_floating_chirality_software.entry_id' '_entry.id'
'_floating_chirality.entry_id' '_entry.id'
'_torsion_angle_constraint_list.entry_id' '_entry.id'
'_torsion_angle_constraint_software.entry_id' '_entry.id'
'_torsion_angle_constraints_expt.entry_id' '_entry.id'
'_karplus_equation.entry_id' '_entry.id'
'_torsion_angle_constraint.entry_id' '_entry.id'
'_ta_constraint_comment_org.entry_id' '_entry.id'
'_ta_constraint_parse_err.entry_id' '_entry.id'
'_ta_constraint_parse_file.entry_id' '_entry.id'
'_ta_constraint_conv_err.entry_id' '_entry.id'
'_rdc_constraint_list.entry_id' '_entry.id'
'_rdc_constraint_software.entry_id' '_entry.id'
'_rdc_constraint_expt.entry_id' '_entry.id'
'_rdc_constraint.entry_id' '_entry.id'
'_rdc_constraint_comment_org.entry_id' '_entry.id'
'_rdc_constraint_parse_err.entry_id' '_entry.id'
'_rdc_constraint_parse_file.entry_id' '_entry.id'
'_rdc_constraint_conv_err.entry_id' '_entry.id'
'_j_three_bond_constraint_list.entry_id' '_entry.id'
'_j_three_bond_constraint_software.entry_id' '_entry.id'
'_j_three_bond_constraint_expt.entry_id' '_entry.id'
'_j_three_bond_constraint.entry_id' '_entry.id'
'_ca_cb_constraint_list.entry_id' '_entry.id'
'_ca_cb_constraint_software.entry_id' '_entry.id'
'_ca_cb_constraint_expt.entry_id' '_entry.id'
'_ca_cb_constraint.entry_id' '_entry.id'
'_h_chem_shift_constraint_list.entry_id' '_entry.id'
'_h_chem_shift_constraint_software.entry_id' '_entry.id'
'_h_chem_shift_constraint_expt.entry_id' '_entry.id'
'_h_chem_shift_constraint.entry_id' '_entry.id'
'_other_constraint_list.entry_id' '_entry.id'
'_other_constraint_expt.entry_id' '_entry.id'
'_other_constraint_software.entry_id' '_entry.id'
stop_
loop_
_item_examples.case
;
4181
;
stop_
_item_type.code 'code'
save_
save__entry.title
_item_description.description
;
A descriptive title for the entry. Something similar to the title of a
scientific paper.
;
_item.name '_entry.title'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
Backbone 1H$ 13C$ and 15N Chemical Shift Assignments for Lysozyme
;
stop_
_item_type.code 'text'
save_
save__entry.version_type
_item_description.description
;
Defines whether the current version of the entry is the original version
or an updated version.
;
_item.name '_entry.version_type'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
original ?
update ?
obsolete ?
stop_
loop_
_item_examples.case
;
original
;
stop_
_item_default.value 'new'
_item_type.code 'line'
save_
save__entry.submission_date
_item_description.description
;
Date the entry was submitted to BMRB.
;
_item.name '_entry.submission_date'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
1999-07-03
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.accession_date
_item_description.description
;
Date BMRB accession number was assigned to the entry.
;
_item.name '_entry.accession_date'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
1999-07-04
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.last_release_date
_item_description.description
;
Date the current version of th entry was released.
;
_item.name '_entry.last_release_date'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
2002-01-12
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.original_release_date
_item_description.description
;
Date the entry was originally released.
;
_item.name '_entry.original_release_date'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
2002-03-21
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.origination
_item_description.description
;
The value to this tag defines who entered the original data into the database.
Entries taken from the literature and entered by BMRB staff are marked
'BMRB.' Entries supplied by authors are marked 'author' and entries taken from
the PDB will be marked 'PDB.'
;
_item.name '_entry.origination'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_examples.case
;
author
;
stop_
_item_default.value 'author'
_item_type.code 'line'
save_
save__entry.nmr_star_version
_item_description.description
;
Version of NMR-STAR in which the current entry is formatted.
;
_item.name '_entry.nmr_star_version'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
1.0 ?
2.0 ?
2.1 ?
2.1.1 ?
3.1 ?
stop_
loop_
_item_examples.case
;
2.1.1
;
stop_
_item_default.value '3.0.8.34'
_item_type.code 'line'
save_
save__entry.original_nmr_star_version
_item_description.description
;
Version of NMR-STAR in which the original entry was generated.
;
_item.name '_entry.original_nmr_star_version'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
1.0 ?
2.0 ?
2.1 ?
2.1.1 ?
3.1 ?
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'line'
save_
save__entry.experimental_method
_item_description.description
;
The experimental method used to gather the data in the entry is given as
the value to this tag.
;
_item.name '_entry.experimental_method'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
NMR ?
stop_
loop_
_item_examples.case
;
NMR
;
stop_
_item_default.value 'NMR'
_item_type.code 'line'
save_
save__entry.experimental_method_subtype
_item_description.description
;
Enter the type of NMR method used (e.g., solution, solid-state (powder),
theoretical, etc.).
;
_item.name '_entry.experimental_method_subtype'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
solution 'Experiments using solution samples'
'solid-state (powder)' 'Experiments using powdered samples'
'solid-state (single crystal)' 'Experiments using single crystals'
theoretical 'Data derived from theoretical calculations'
stop_
loop_
_item_examples.case
;
Solution
;
stop_
_item_default.value 'solution'
_item_type.code 'line'
save_
save__entry.dep_release_code_coordinates
_item_description.description
;
Select the status or terms to be applied for the release of the atomic
coordinate data to the public. Depositors are encourage to make their data available
to the public as quickly as possible. However, requests may be made to hold
the data for a limited period of time up to one year or until the manuscript reporting
the data is published.
;
_item.name '_entry.dep_release_code_coordinates'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'RELEASE NOW' 'Release immediately'
'HOLD FOR PUBLICATION' 'Hold until primary citation is published'
'HOLD FOR 6 WEEKS' 'Hold for 6 weeks'
'HOLD FOR 6 MONTHS' 'Hold for 6 months'
'HOLD FOR 1 YEAR' 'Hold for 1 year'
stop_
loop_
_item_examples.case
;
RELEASE NOW
;
stop_
_item_default.value 'HOLD FOR PUBLICATION'
_item_type.code 'line'
save_
save__entry.dep_release_code_nmr_constraints
_item_description.description
;
Select the status or terms to be applied for the release of the NMR constraint
data to the public. Depositors are encourage to make their data available
to the public as quickly as possible. However, requests may be made to hold the
data for a limited period of time up to one year or until the manuscript reporting
the data is published.
;
_item.name '_entry.dep_release_code_nmr_constraints'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'RELEASE NOW' 'Release immediately'
'HOLD FOR PUBLICATION' 'Hold until primary citation is published'
'HOLD FOR 6 MONTHS' 'Hold for 6 months'
'HOLD FOR 1 YEAR' 'Hold for 1 year'
stop_
loop_
_item_examples.case
;
RELEASE NOW
;
stop_
_item_default.value 'HOLD FOR PUBLICATION'
_item_type.code 'line'
save_
save__entry.dep_release_code_nmr_exptl
_item_description.description
;
Select the status or terms to be applied for the release of the NMR experimental
data to the public. Depositors are encourage to make their data available
to the public as quickly as possible. However, requests may be made to hold
the data for a limited period of time up to one year or until the manuscript reporting
the data is published.
;
_item.name '_entry.dep_release_code_nmr_exptl'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'RELEASE NOW' 'Release immediately'
'HOLD FOR PUBLICATION' 'Hold until primary citation is published'
'HOLD FOR 6 MONTHS' 'Hold for 6 months'
'HOLD FOR 1 YEAR' 'Hold for 1 year'
stop_
loop_
_item_examples.case
;
RELEASE NOW
;
stop_
_item_default.value 'HOLD FOR PUBLICATION'
_item_type.code 'line'
save_
save__entry.dep_release_code_sequence
_item_description.description
;
Select the status or terms to be applied for the prerelease of the sequence
information for the biopolymers to the public. Although the atomic coordinate
and other data may be placed 'on hold', immediate release of the polymer sequence
data will allow others, including the structural genomics centers, to identify
polymers that have been studied and to select other targets reducing duplicate
effort.
;
_item.name '_entry.dep_release_code_sequence'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'RELEASE NOW' 'Release sequence information in status reports immediately'
'HOLD FOR RELEASE' ?
stop_
loop_
_item_examples.case
;
RELEASE NOW
;
stop_
_item_default.value 'RELEASE NOW'
_item_type.code 'line'
save_
save__entry.casp_target
_item_description.description
;
?
;
_item.name '_entry.casp_target'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
no
;
stop_
_item_type.code 'yes_no'
save_
save__entry.details
_item_description.description
;
An optional text description of the entry used to provide additional information
above that given as values to other items in the entry.
;
_item.name '_entry.details'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entry.pdb_update_details
_item_description.description
;
?
;
_item.name '_entry.pdb_update_details'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
This deposition represents a further refinement of the previously deposited structure.
;
stop_
_item_type.code 'text'
save_
save__entry.release_request
_item_description.description
;
The condition choosen by the author for the release of the entry.
;
_item.name '_entry.release_request'
_item.category_id 'entry'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Immediately ?
'On publication' ?
'In one year' ?
'At a specific future date' ?
stop_
loop_
_item_examples.case
;
Immediate; On publication; Specific date; One year hold
;
stop_
_item_type.code 'line'
save_
save__entry.status_code
_item_description.description
;
Code for status of file.
;
_item.name '_entry.status_code'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
REL
;
stop_
_item_type.code 'line'
save_
save__entry.recvd_deposit_form
_item_description.description
;
This code indicates whether the deposition form for an entry has been received.
;
_item.name '_entry.recvd_deposit_form'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entry.date_deposition_form
_item_description.description
;
The date the deposition form is received.
;
_item.name '_entry.date_deposition_form'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.recvd_coordinates
_item_description.description
;
This code indicates whether the coordinates for an entry have been received.
;
_item.name '_entry.recvd_coordinates'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entry.date_coordinates
_item_description.description
;
The date the coordinates are received.
;
_item.name '_entry.date_coordinates'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.recvd_nmr_constraints
_item_description.description
;
This code indicates whether the NMR constraint data for an entry have been
received.
;
_item.name '_entry.recvd_nmr_constraints'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entry.date_nmr_constraints
_item_description.description
;
The date the NMR constraints are received.
;
_item.name '_entry.date_nmr_constraints'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.recvd_manuscript
_item_description.description
;
This code indicates whether the manuscript for an entry has been received.
;
_item.name '_entry.recvd_manuscript'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entry.date_manuscript
_item_description.description
;
The date the manuscript is received.
;
_item.name '_entry.date_manuscript'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.recvd_author_approval
_item_description.description
;
This code indicates whether the author's approval for an entry has been
received.
;
_item.name '_entry.recvd_author_approval'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entry.date_author_approval
_item_description.description
;
The date the author's approval is received.
;
_item.name '_entry.date_author_approval'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.recvd_initial_deposition_date
_item_description.description
;
The date of initial deposition. (The first message for deposition has been
received.)
;
_item.name '_entry.recvd_initial_deposition_date'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.pdb_date_submitted
_item_description.description
;
The date of complete deposition. This corresponds to the date at which
the PDB identifier is assigned.
;
_item.name '_entry.pdb_date_submitted'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.author_release_status_code
_item_description.description
;
The release status authorized by the depositor.
;
_item.name '_entry.author_release_status_code'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
REL
;
stop_
_item_type.code 'line'
save_
save__entry.date_of_pdb_release
_item_description.description
;
PDB release date. This is the date that appears in the PDB REVDAT record.
;
_item.name '_entry.date_of_pdb_release'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.date_hold_coordinates
_item_description.description
;
At an author's request, a coordinate entry may be held after processing
for some period of time.
;
_item.name '_entry.date_hold_coordinates'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.date_hold_nmr_constraints
_item_description.description
;
At an author's request, the NMR constraint data may be held after processing
for some period of time.
;
_item.name '_entry.date_hold_nmr_constraints'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry.pdb_deposit_site
_item_description.description
;
The site where the file was deposited.
;
_item.name '_entry.pdb_deposit_site'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
BMRB
;
stop_
_item_default.value 'BMRB'
_item_type.code 'line'
save_
save__entry.pdb_process_site
_item_description.description
;
The site where the file was processed.
;
_item.name '_entry.pdb_process_site'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
RCSB
;
stop_
_item_default.value 'RCSB'
_item_type.code 'line'
save_
save__entry.bmrb_deposit_site
_item_description.description
;
?
;
_item.name '_entry.bmrb_deposit_site'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
BMRB
;
stop_
_item_default.value 'BMRB'
_item_type.code 'line'
save_
save__entry.bmrb_process_site
_item_description.description
;
?
;
_item.name '_entry.bmrb_process_site'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
BMRB
;
stop_
_item_default.value 'BMRB'
_item_type.code 'line'
save_
save__entry.rcsb_annotator
_item_description.description
;
?
;
_item.name '_entry.rcsb_annotator'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'UNASSIGNED'
_item_type.code 'line'
save_
save__entry.author_approval_type
_item_description.description
;
This code indicates whether the author's approval for an entry was received
explicitly or implicitly. The latter is automatically implied by failure to
respond to the validation summary within the prescribed period.
;
_item.name '_entry.author_approval_type'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
implicit = automatic approval by failure to acknowledge; explicit = approval via depositor acknowledgement
;
stop_
_item_type.code 'line'
save_
save__entry.assigned_bmrb_id
_item_description.description
;
?
;
_item.name '_entry.assigned_bmrb_id'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entry.assigned_bmrb_deposition_code
_item_description.description
;
?
;
_item.name '_entry.assigned_bmrb_deposition_code'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entry.assigned_pdb_id
_item_description.description
;
?
;
_item.name '_entry.assigned_pdb_id'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entry.assigned_pdb_deposition_code
_item_description.description
;
?
;
_item.name '_entry.assigned_pdb_deposition_code'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entry.assigned_restart_id
_item_description.description
;
?
;
_item.name '_entry.assigned_restart_id'
_item.category_id 'entry'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save_entry_proc_cycle
_category.description
;
Items in the entry_proc_cycle category provide information about the processing of an entry.
;
_category.id 'entry_proc_cycle'
_category.mandatory_code yes
loop_
_category_key.name
'_entry_proc_cycle.cycle_id'
'_entry_proc_cycle.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entry_proc_cycle.cycle_id
_item_description.description
;
This is a number of the processing cycle.
;
_item.name '_entry_proc_cycle.cycle_id'
_item.category_id 'entry_proc_cycle'
_item.mandatory_code no
loop_
_item_examples.case
;
1 for the initial cycle
;
stop_
_item_type.code 'int'
save_
save__entry_proc_cycle.date_begin_cycle
_item_description.description
;
This is the date of the start of the processing cycle.
;
_item.name '_entry_proc_cycle.date_begin_cycle'
_item.category_id 'entry_proc_cycle'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry_proc_cycle.date_end_cycle
_item_description.description
;
This is the date of the end of the processing cycle.
;
_item.name '_entry_proc_cycle.date_end_cycle'
_item.category_id 'entry_proc_cycle'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entry_proc_cycle.details
_item_description.description
;
Special details about the current processing cycle.
;
_item.name '_entry_proc_cycle.details'
_item.category_id 'entry_proc_cycle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entry_proc_cycle.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entry_proc_cycle.entry_id'
_item.category_id 'entry_proc_cycle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_entry_prerelease_seq
_category.description
;
Items in the entry_prerelease_seq category capture the sequences in one-letter form of entities that can be released to the public before the release of the full entry.
;
_category.id 'entry_prerelease_seq'
_category.mandatory_code yes
loop_
_category_key.name
'_entry_prerelease_seq.entity_id'
'_entry_prerelease_seq.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entry_prerelease_seq.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entry_prerelease_seq.entity_id'
_item.category_id 'entry_prerelease_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entry_prerelease_seq.entity_label
_item_description.description
;
STAR framecode for the entity whose residue sequence is being provided
as the value to the tag '_Entry_prerelease_seq.Seq_one_letter_code'.
;
_item.name '_entry_prerelease_seq.entity_label'
_item.category_id 'entry_prerelease_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entry_prerelease_seq.seq_one_letter_code
_item_description.description
;
Chemical sequence expressed as a string of one-letter amino acid or nucleic
acid codes.
;
_item.name '_entry_prerelease_seq.seq_one_letter_code'
_item.category_id 'entry_prerelease_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entry_prerelease_seq.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entry_prerelease_seq.entry_id'
_item.category_id 'entry_prerelease_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_contact_person
_category.description
;
Items in the contact_person category capture information about the people that can be contacted to provide answers to questions raised during the annotation and processing of an entry.
;
_category.id 'contact_person'
_category.mandatory_code yes
loop_
_category_key.name
'_contact_person.id'
'_contact_person.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__contact_person.id
_item_description.description
;
Unique identifier within the entry for the named contact person.
;
_item.name '_contact_person.id'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__contact_person.email_address
_item_description.description
;
Business e-mail address for the contact person.
;
_item.name '_contact_person.email_address'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
jsmith@home_addr.gov
;
stop_
_item_type.code 'email'
save_
save__contact_person.name_salutation
_item_description.description
;
The salutation of the author of the deposition to whom correspondence should
be addressed
;
_item.name '_contact_person.name_salutation'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
Dr. n.a.
Prof. n.a.
Mr. n.a.
Ms. n.a.
Mrs. n.a.
stop_
loop_
_item_examples.case
;
Dr.
;
stop_
_item_type.code 'line'
save_
save__contact_person.given_name
_item_description.description
;
The name given the contact person at birth or currently used by the author
for publication purposes. Can be an initial if the author uses a second name
as a full name when publishing.
;
_item.name '_contact_person.given_name'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
John
;
stop_
_item_type.code 'line'
save_
save__contact_person.family_name
_item_description.description
;
The family name for the contact person.
;
_item.name '_contact_person.family_name'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
Smith
;
stop_
_item_type.code 'line'
save_
save__contact_person.middle_initials
_item_description.description
;
The initials for the contact person's middle names. A name can be used
here if the contact person uses a middle name for publications.
;
_item.name '_contact_person.middle_initials'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
T.L.
;
stop_
_item_type.code 'line'
save_
save__contact_person.family_title
_item_description.description
;
A common family title (not a professional title).
;
_item.name '_contact_person.family_title'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
Sr. Senior
Jr. Junior
I First
II Second
III Third
IV Fourth
stop_
loop_
_item_examples.case
;
III
;
stop_
_item_type.code 'line'
save_
save__contact_person.department_and_institution
_item_description.description
;
Department and institution where the contact person works.
;
_item.name '_contact_person.department_and_institution'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
Chemistry Dept.$ Rutgers Univ.
;
stop_
_item_type.code 'text'
save_
save__contact_person.mailing_address
_item_description.description
;
A business mailing address for the contact person.
;
_item.name '_contact_person.mailing_address'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
123 Hose Ln
;
stop_
_item_type.code 'text'
save_
save__contact_person.address_1
_item_description.description
;
The mailing address of the author of the entry to whom correspondence should
be addressed, line 1 of 3.
;
_item.name '_contact_person.address_1'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
123 Hose Ln
;
stop_
_item_type.code 'text'
save_
save__contact_person.address_2
_item_description.description
;
The mailing address of the author of the entry to whom correspondence should
be addressed, line 2 of 3.
;
_item.name '_contact_person.address_2'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
Chemistry Dept.
;
stop_
_item_type.code 'text'
save_
save__contact_person.address_3
_item_description.description
;
The mailing address of the author of the entry to whom correspondence should
be addressed, line 3 of 3.
;
_item.name '_contact_person.address_3'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
Rutgers Univ.
;
stop_
_item_type.code 'text'
save_
save__contact_person.city
_item_description.description
;
The city in the mailing address of the author of the entry to whom correspondence
should be addresed.
;
_item.name '_contact_person.city'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
Piscataway
;
stop_
_item_type.code 'line'
save_
save__contact_person.state_province
_item_description.description
;
State or province where the contact person is located.
;
_item.name '_contact_person.state_province'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
New Jersey
;
stop_
_item_type.code 'line'
save_
save__contact_person.country
_item_description.description
;
The country in the mailing address of the author of the entry to whom correspondence
should be addresed.
;
_item.name '_contact_person.country'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
USA
;
stop_
_item_type.code 'line'
save_
save__contact_person.postal_code
_item_description.description
;
The postal code or zip code for the address of the contact person to whom
correspondence should be addressed.
;
_item.name '_contact_person.postal_code'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
8854
;
stop_
_item_type.code 'line'
save_
save__contact_person.phone_number
_item_description.description
;
A business telephone number for the contact person.
;
_item.name '_contact_person.phone_number'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
+1 123 456 7890
;
stop_
_item_type.code 'phone'
save_
save__contact_person.fax_number
_item_description.description
;
Business FAX number for the contact person.
;
_item.name '_contact_person.fax_number'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_examples.case
;
+1 123 789 4560
;
stop_
_item_type.code 'fax'
save_
save__contact_person.role
_item_description.description
;
The role of this author in the project depositing this data.
;
_item.name '_contact_person.role'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'principal investigator' 'n.a.'
'responsible scientist' 'n.a.'
investigator 'n.a.'
stop_
loop_
_item_examples.case
;
principal investigator
;
stop_
_item_default.value 'principal investigator'
_item_type.code 'line'
save_
save__contact_person.organization_type
_item_description.description
;
The organization type to which this author is affiliated.
;
_item.name '_contact_person.organization_type'
_item.category_id 'contact_person'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
academic ?
commercial ?
government ?
other ?
stop_
loop_
_item_examples.case
;
academic
;
stop_
_item_default.value 'academic'
_item_type.code 'line'
save_
save__contact_person.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_contact_person.entry_id'
_item.category_id 'contact_person'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_entry_author
_category.description
;
Items in the entry_author category define the names of the authors of an entry.
;
_category.id 'entry_author'
_category.mandatory_code yes
loop_
_category_key.name
'_entry_author.ordinal'
'_entry_author.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entry_author.ordinal
_item_description.description
;
Integer value defining the position of the author's name in the list of authors.
;
_item.name '_entry_author.ordinal'
_item.category_id 'entry_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__entry_author.given_name
_item_description.description
;
The name given the author at birth or currently used by the author for
publication purposes. Can be an initial if the author uses a second name as a full
name when publishing.
;
_item.name '_entry_author.given_name'
_item.category_id 'entry_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
Adlai
;
stop_
_item_type.code 'line'
save_
save__entry_author.family_name
_item_description.description
;
The family name of the author.
;
_item.name '_entry_author.family_name'
_item.category_id 'entry_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
Stevenson
;
stop_
_item_type.code 'line'
save_
save__entry_author.first_initial
_item_description.description
;
Initial of the author's first name.
;
_item.name '_entry_author.first_initial'
_item.category_id 'entry_author'
_item.mandatory_code no
loop_
_item_examples.case
;
A.
;
stop_
_item_type.code 'line'
save_
save__entry_author.middle_initials
_item_description.description
;
The initials for the author's middle names. A name can be used here if
the author uses a middle name for publications.
;
_item.name '_entry_author.middle_initials'
_item.category_id 'entry_author'
_item.mandatory_code no
loop_
_item_examples.case
;
T.L.
;
stop_
_item_type.code 'line'
save_
save__entry_author.family_title
_item_description.description
;
A common family title (not a professional title).
;
_item.name '_entry_author.family_title'
_item.category_id 'entry_author'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
Sr. Senior
Jr. Junior
I First
II Second
III Third
IV Fourth
stop_
loop_
_item_examples.case
;
Jr.
;
stop_
_item_type.code 'line'
save_
save__entry_author.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entry_author.entry_id'
_item.category_id 'entry_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_sg_project
_category.description
;
Items in the SG_project category describe the structural genomics project that is the source of the data in an entry.
;
_category.id 'sg_project'
_category.mandatory_code yes
loop_
_category_key.name
'_sg_project.sg_project_id'
'_sg_project.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sg_project.sg_project_id
_item_description.description
;
A unique integer identifier for this center
;
_item.name '_sg_project.sg_project_id'
_item.category_id 'sg_project'
_item.mandatory_code yes
loop_
_item_examples.case
;
1; 2; 3
;
stop_
_item_type.code 'int'
save_
save__sg_project.project_name
_item_description.description
;
The value identifies the Structural Genomics project of the granting agency.
;
_item.name '_sg_project.project_name'
_item.category_id 'sg_project'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'PSI Protein Structure Initiative' 'n.a.'
'NPPSFA National Project on Protein Structural and Functional Analyses' 'n.a.'
stop_
loop_
_item_examples.case
;
PSI (Protein Structure Initiative)
;
stop_
_item_type.code 'text'
save_
save__sg_project.full_name_of_center
_item_description.description
;
The value identifies the full name of center.
;
_item.name '_sg_project.full_name_of_center'
_item.category_id 'sg_project'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'Bacterial targets at IGS-CNRS France' ?
'Berkeley Structural Genomics Center' ?
'Center for Eukaryotic Structural Genomics' ?
'Israel Structural Proteomics Center' ?
'Joint Center for Structural Genomics' ?
'Marseilles Structural Genomics Program @ AFMB' ?
'Midwest Center for Structural Genomics' ?
'Montreal-Kingston Bacterial Structural Genomics Initiative' ?
'Mycobacterium Tuberculosis Structural Proteomics Project' ?
'New York Structural Genomics Research Consortium' ?
'Northeast Structural Genomics Consortium' ?
'Oxford Protein Production Facility' ?
'Paris-Sud Yeast Structural Genomics' ?
'Protein Structure Factory' ?
'RIKEN Structural Genomics/Proteomics Initiative' ?
'Southeast Collaboratory for Structural Genomics' ?
'Structural Genomics Consortium' ?
'Structural Genomics of Pathogenic Protozoa Consortium' ?
'Structural Proteomics in Europe' ?
'Structure 2 Function Project' ?
'TB Structural Genomics Consortium' ?
stop_
loop_
_item_examples.case
;
Berkeley Structural Genomics Center
;
stop_
_item_type.code 'text'
save_
save__sg_project.initial_of_center
_item_description.description
;
The value identifies the center using initials or other abbreviation.
;
_item.name '_sg_project.initial_of_center'
_item.category_id 'sg_project'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
BIGS ?
BSGC ?
CESG ?
ISPC ?
JCSG ?
MSGP ?
MCSG ?
BSGI ?
XMTB ?
NYSGRC ?
NESG ?
OPPF ?
YSG ?
PSF ?
RSGI ?
SECSG ?
SGC ?
SGPP ?
SPINE ?
S2F ?
TBSGC ?
stop_
loop_
_item_examples.case
;
BSGC
;
stop_
_item_type.code 'text'
save_
save__sg_project.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sg_project.entry_id'
_item.category_id 'sg_project'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_entry_src
_category.description
;
Items in the entry_src category describe the organization that is the source of the data in an entry.
;
_category.id 'entry_src'
_category.mandatory_code yes
loop_
_category_key.name
'_entry_src.project_name'
'_entry_src.organization_initials'
'_entry_src.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entry_src.project_name
_item_description.description
;
Name of the project under which the data reported in an entry was sponsored
or funded. This might be the title for a grant funding the research or the
name of the overall project defined by a granting agency.
;
_item.name '_entry_src.project_name'
_item.category_id 'entry_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'Protein Structure Initiative' ?
stop_
loop_
_item_examples.case
;
NIH Protein Structure Initiative
;
stop_
_item_type.code 'line'
save_
save__entry_src.organization_full_name
_item_description.description
;
Name of the organization (company, research laboratory, etc.) that carried
out the research reported in the entry.
;
_item.name '_entry_src.organization_full_name'
_item.category_id 'entry_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'Berkeley Structural Genomics Center' BSGC
'Center for Eukaryotic Structural Genomics' CESG
'Joint Center for Structural Genomics' JCSG
'Midwest Center for Structural Genomics' MCSG
'New York Structural Genomics Research Consortium' NYSGRC
'Northeast Structural Genomics Consortium' NESGC
'Southeast Collaboratory for Structural Genomics' SECSG
'Structural Genomics of Pathogenic Protozoa Consortium' SGPPC
'TB Structural Genomics Consortium' TBSGC
'Protein Structure Factory' PSF
'Yeast Structural Genomics' YSG
'North West Structural Genomics Centre' NWSGC
'Architecture and Function of Biological Macromolecules Structure Genomics' ASG
stop_
loop_
_item_examples.case
;
Wuthrich group; ETH
;
stop_
_item_type.code 'line'
save_
save__entry_src.organization_initials
_item_description.description
;
Laboratory title or name or acronym for the organization where the research
was conducted. More than one organization can be provided.
;
_item.name '_entry_src.organization_initials'
_item.category_id 'entry_src'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
BSGC ?
CESG ?
JCSG ?
MCSG ?
NYSGRC ?
NESGC ?
SECSG ?
SGPPC ?
TBSGC ?
PSF ?
YSG ?
NWSGC ?
ASG ?
stop_
loop_
_item_examples.case
;
NESGC
;
stop_
_item_type.code 'line'
save_
save__entry_src.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entry_src.entry_id'
_item.category_id 'entry_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_struct_keywords
_category.description
;
Items in the struct_keywords category define keywords that describe the structure of the biomolecular system reported.
;
_category.id 'struct_keywords'
_category.mandatory_code yes
loop_
_category_key.name
'_struct_keywords.keywords'
'_struct_keywords.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__struct_keywords.keywords
_item_description.description
;
Keywords describing the structure
;
_item.name '_struct_keywords.keywords'
_item.category_id 'struct_keywords'
_item.mandatory_code yes
loop_
_item_examples.case
;
PROTEIN/RNA
;
stop_
_item_type.code 'line'
save_
save__struct_keywords.text
_item_description.description
;
Keywords describing this structure.
;
_item.name '_struct_keywords.text'
_item.category_id 'struct_keywords'
_item.mandatory_code no
loop_
_item_examples.case
;
inhibited complex
;
stop_
_item_type.code 'text'
save_
save__struct_keywords.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_struct_keywords.entry_id'
_item.category_id 'struct_keywords'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_data_set
_category.description
;
Items in the data_set category define the kinds of data and the number of data sets for each kind of data in the entry.
;
_category.id 'data_set'
_category.mandatory_code yes
loop_
_category_key.name
'_data_set.type'
'_data_set.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__data_set.type
_item_description.description
;
The saveframe category type that contain quantitative data of the kind
that is summarized in this table. The enumerated list for this tag is a subset
of the full list of saveframe categories available in constructing an NMR-STAR file.
;
_item.name '_data_set.type'
_item.category_id 'data_set'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
assigned_chemical_shifts ?
coupling_constants ?
spectral_peak_list ?
other_data_list ?
RDCs ?
order_parameters ?
spectral_density_values ?
H_exch_rates ?
H_exch_protection_factors ?
pKa_value_data_set ?
pH_NMR_param_list ?
D_H_fractionation_factors ?
molecular_axis_determinations ?
deduced_secd_struct_features ?
deduced_hydrogen_bonds ?
representative_conformer ?
conformer_family_coord_set ?
heteronucl_T1_relaxation ?
heteronucl_T2_relaxation ?
heteronucl_NOEs ?
stop_
loop_
_item_examples.case
;
assigned_chemical_shifts
;
stop_
_item_type.code 'line'
save_
save__data_set.count
_item_description.description
;
The integer number of saveframes in the entry that are of the type given
by the value to the tag '_Saveframe_category_type' in this loop.
;
_item.name '_data_set.count'
_item.category_id 'data_set'
_item.mandatory_code yes
loop_
_item_examples.case
;
2
;
stop_
_item_type.code 'int'
save_
save__data_set.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_data_set.entry_id'
_item.category_id 'data_set'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_datum
_category.description
;
Items in the datum category define the types of datum in the entry and the quantity of each type.
;
_category.id 'datum'
_category.mandatory_code yes
loop_
_category_key.name
'_datum.type'
'_datum.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__datum.type
_item_description.description
;
A type of quantitative data found in the entry.
;
_item.name '_datum.type'
_item.category_id 'datum'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'1H chemical shifts' ?
'13C chemical shifts' ?
'15N chemical shifts' ?
'coupling constants' ?
'chemical shift isotope effects' ?
'molecule interaction chemical shift values' ?
'T1 relaxation values' ?
'T1rho relaxation values' ?
'T2 relaxation values' ?
'dipole-dipole relaxation values' ?
'cross correlation relaxation values' ?
'chemical shift anisotropy values' ?
'chemical shift anisotropy tensor values' ?
'quadrupolar couplings' ?
'theoretical chemical shifts' ?
'chemical shift tensors' ?
'residual dipolar couplings' ?
'dipolar coupling values' ?
'dipolar coupling tensor values' ?
'heteronuclear NOE values' ?
'homonuclear NOE values' ?
'order parameters' ?
'spectral density values' ?
'H exchange rates' ?
'H exchange protection factors' ?
'pKa values' ?
'pH NMR parameter values' ?
'D/H fractionation factors' ?
'bond orientation values' ?
'deduced secondary structure values' ?
'deduced hydrogen bonds' ?
'Distance constraints' ?
'ambiguous distance constraints' ?
'hydrogen bond distance constraints' ?
'torsion angle constraints' ?
'chemical shift constraints' ?
'symmetry constraints' ?
stop_
loop_
_item_examples.case
;
1H chemical shifts
;
stop_
_item_type.code 'line'
save_
save__datum.count
_item_description.description
;
An integer representing the total number of values of the type defined
by the value to the tag '_Data_type' found in all saveframes in the current entry.
;
_item.name '_datum.count'
_item.category_id 'datum'
_item.mandatory_code yes
loop_
_item_examples.case
;
981
;
stop_
_item_type.code 'int'
save_
save__datum.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_datum.entry_id'
_item.category_id 'datum'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_release
_category.description
;
Items in the release category provide the release history for an entry.
;
_category.id 'release'
_category.mandatory_code yes
loop_
_category_key.name
'_release.release_number'
'_release.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__release.release_number
_item_description.description
;
Unique code assigned to each release of an entry
;
_item.name '_release.release_number'
_item.category_id 'release'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__release.date
_item_description.description
;
Date entry was released.
;
_item.name '_release.date'
_item.category_id 'release'
_item.mandatory_code yes
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__release.submission_date
_item_description.description
;
Date the entry or an update to the entry was submitted to BMRB.
;
_item.name '_release.submission_date'
_item.category_id 'release'
_item.mandatory_code no
loop_
_item_examples.case
;
2004-02-29
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__release.type
_item_description.description
;
Value describing with a key word the type of entry that was released.
;
_item.name '_release.type'
_item.category_id 'release'
_item.mandatory_code yes
loop_
_item_examples.case
;
original
;
stop_
_item_type.code 'line'
save_
save__release.author
_item_description.description
;
A keyword indicating the type of author of the release.
;
_item.name '_release.author'
_item.category_id 'release'
_item.mandatory_code yes
loop_
_item_examples.case
;
author
;
stop_
_item_type.code 'line'
save_
save__release.detail
_item_description.description
;
Text describing the changes made to the entry.
;
_item.name '_release.detail'
_item.category_id 'release'
_item.mandatory_code no
loop_
_item_examples.case
;
Oringinal entry release
;
stop_
_item_type.code 'text'
save_
save__release.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_release.entry_id'
_item.category_id 'release'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_related_entries
_category.description
;
Items in the related_entries category provide a list of entries that are related to the present entry. The related entries may or may not be members of a study that includes the present entry.
;
_category.id 'related_entries'
_category.mandatory_code yes
loop_
_category_key.name
'_related_entries.database_name'
'_related_entries.database_accession_code'
'_related_entries.entry_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entry_information'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__related_entries.database_name
_item_description.description
;
List of accession numbers for BMRB entries that are in someway related
to the current entry.
;
_item.name '_related_entries.database_name'
_item.category_id 'related_entries'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
BMRB ?
PDB ?
stop_
loop_
_item_examples.case
;
BMRB; PDB
;
stop_
_item_type.code 'line'
save_
save__related_entries.database_accession_code
_item_description.description
;
Enter the entry code for an already existing BMRB or PDB entry.
;
_item.name '_related_entries.database_accession_code'
_item.category_id 'related_entries'
_item.mandatory_code yes
loop_
_item_examples.case
;
4038; 1brv
;
stop_
_item_type.code 'line'
save_
save__related_entries.relationship
_item_description.description
;
Text describing the relationship between the current BMRB entry and the
entry with the corresponding BMRB accession number given as a value to the tag
'_Related_BMRB_accession_number.'
;
_item.name '_related_entries.relationship'
_item.category_id 'related_entries'
_item.mandatory_code no
loop_
_item_examples.case
;
Entry containing coupling constants for this molecular system.
;
stop_
_item_type.code 'line'
save_
save__related_entries.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_related_entries.entry_id'
_item.category_id 'related_entries'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_citation
_category.description
;
Items in the citation category capture information common to all citations.
;
_category.id 'citation'
_category.mandatory_code yes
loop_
_category_key.name
'_citation.entry_id'
'_citation.id'
stop_
loop_
_category_group.id
'inclusive_group'
'citations'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__citation.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_citation.sf_category'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__citation.sf_framecode
_item_description.description
;
A label that uniquely identifies the citation from other citations in the entry.
;
_item.name '_citation.sf_framecode'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
citation 1
;
stop_
_item_default.value 'entry_citation'
_item_type.code 'line'
save_
save__citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_citation.entry_id'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
citation
;
stop_
_item_type.code 'code'
save_
save__citation.id
_item_description.description
;
A value that uniquely identifies the citation from all other citations
provided in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_citation.id' 'citation' yes
'_citation_author.citation_id' 'citation_author' yes
'_citation_keyword.citation_id' 'citation_keyword' yes
'_citation_editor.citation_id' 'citation_editor' yes
'_assembly_citation.citation_id' 'assembly_citation' yes
'_subsystem_citation.citation_id' 'subsystem_citation' yes
'_entity_citation.citation_id' 'entity_citation' yes
'_entity_natural_src.citation_id' 'entity_natural_src' yes
'_entity_experimental_src.citation_id' 'entity_experimental_src' yes
'_characteristic.citation_id' 'characteristic' yes
'_chem_comp_citation.citation_id' 'chem_comp_citation' yes
'_sample.crystal_grow_method_cit_id' 'sample' yes
'_sample.crystal_grow_seeding_cit_id' 'sample' yes
'_sample_citation.citation_id' 'sample_citation' yes
'_sample_condition_citation.citation_id' 'sample_condition_citation' yes
'_entity_purity_citation.citation_id' 'entity_purity_citation' yes
'_software_citation.citation_id' 'software_citation' yes
'_method_citation.citation_id' 'method_citation' yes
'_nmr_spectrometer_citation.citation_id' 'nmr_spectrometer_citation' yes
'_nmr_spectrometer_view.citation_id' 'nmr_spectrometer_view' yes
'_nmr_spectrometer_probe_citation.citation_id' 'nmr_spectrometer_probe_citation' yes
'_nmr_experiment_citation.citation_id' 'nmr_experiment_citation' yes
'_computer_citation.citation_id' 'computer_citation' yes
'_chem_shift_ref.indirect_shift_ratio_cit_id' 'chem_shift_ref' yes
'_chem_shift_ref.correction_val_cit_id' 'chem_shift_ref' yes
'_h_exch_protection_factor_list.std_values_source_cit_id' 'h_exch_protection_factor_list' yes
'_karplus_equation.citation_id' 'karplus_equation' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_citation_author.citation_id' '_citation.id'
'_citation_keyword.citation_id' '_citation.id'
'_citation_editor.citation_id' '_citation.id'
'_assembly_citation.citation_id' '_citation.id'
'_subsystem_citation.citation_id' '_citation.id'
'_entity_citation.citation_id' '_citation.id'
'_entity_natural_src.citation_id' '_citation.id'
'_entity_experimental_src.citation_id' '_citation.id'
'_characteristic.citation_id' '_citation.id'
'_chem_comp_citation.citation_id' '_citation.id'
'_sample.crystal_grow_method_cit_id' '_citation.id'
'_sample.crystal_grow_seeding_cit_id' '_citation.id'
'_sample_citation.citation_id' '_citation.id'
'_sample_condition_citation.citation_id' '_citation.id'
'_entity_purity_citation.citation_id' '_citation.id'
'_software_citation.citation_id' '_citation.id'
'_method_citation.citation_id' '_citation.id'
'_nmr_spectrometer_citation.citation_id' '_citation.id'
'_nmr_spectrometer_view.citation_id' '_citation.id'
'_nmr_spectrometer_probe_citation.citation_id' '_citation.id'
'_nmr_experiment_citation.citation_id' '_citation.id'
'_computer_citation.citation_id' '_citation.id'
'_chem_shift_ref.indirect_shift_ratio_cit_id' '_citation.id'
'_chem_shift_ref.correction_val_cit_id' '_citation.id'
'_h_exch_protection_factor_list.std_values_source_cit_id' '_citation.id'
'_karplus_equation.citation_id' '_citation.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__citation.class
_item_description.description
;
Keyword defining the citation as the key citation for the entry or a citation
used as a referenece in the entry.
;
_item.name '_citation.class'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'entry citation' ?
'reference citation' ?
stop_
loop_
_item_examples.case
;
entry citation
;
stop_
_item_default.value 'entry citation'
_item_type.code 'line'
save_
save__citation.cas_abstract_code
_item_description.description
;
Code from the Chemical Abstract Services assigned to this citation.
;
_item.name '_citation.cas_abstract_code'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__citation.medline_ui_code
_item_description.description
;
MEDLINE uniform identification code assigned to the publication described
in the saveframe.
;
_item.name '_citation.medline_ui_code'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__citation.pubmed_id
_item_description.description
;
The identification code assigned to the publication by PubMed. If this
code is available no other information regarding the publication needs to be entered
in the deposition.
;
_item.name '_citation.pubmed_id'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
12815265
;
stop_
_item_type.code 'code'
save_
save__citation.full_citation
_item_description.description
;
Full publication citation including authors title journal page numbers
year or equivalent information for the type of publication given.
;
_item.name '_citation.full_citation'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__citation.title
_item_description.description
;
Title for the publication.
;
_item.name '_citation.title'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
'1H and 15N Assigned Chemical Shifts for RNase A'
;
stop_
_item_type.code 'text'
save_
save__citation.status
_item_description.description
;
Status for the current publication (in preparation submitted in press published)
;
_item.name '_citation.status'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'in preparation' ?
submitted ?
'in press' ?
published ?
retracted ?
stop_
loop_
_item_examples.case
;
submitted
;
stop_
_item_default.value 'in preparation'
_item_type.code 'line'
save_
save__citation.type
_item_description.description
;
Descriptive word that defines the kind of publication reported (journal;
book; thesis; etc.)
;
_item.name '_citation.type'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
journal ?
book ?
thesis ?
abstract ?
'personal communication' ?
Internet ?
'BMRB only' ?
stop_
loop_
_item_examples.case
;
journal
;
stop_
_item_default.value 'journal'
_item_type.code 'line'
save_
save__citation.journal_abbrev
_item_description.description
;
Standard abbreviation for journals used by the Chemical Abstract Services.
Depositors are required to provide a value for this field. If the data in
the deposition are related to a JBNMR paper, the value must be 'J. Biol. NMR' to
alert the BMRB annotators so that the deposition is properly processed. If the
depositor truly does not know the journal a value of 'not known' is acceptable.
;
_item.name '_citation.journal_abbrev'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'Arch. Biochem. Biophys.' ?
Biochemistry ?
'Biochem. Biophys. Res. Commun.' ?
'Biochem. J.' ?
'Biochim. Biophys. Acta' ?
'Biophys. J.' ?
Biopolymers ?
Cell ?
'EMBO J.' ?
'Eur. J. Biochem.' ?
'FEBS Lett.' ?
'Inorg. Chem.' ?
'Int. J. Pept. Protein Res.' ?
'J. Am. Chem. Soc.' ?
'J. Biochem.' ?
'J. Biol. Chem.' ?
'J. Biol. Inorg. Chem.' ?
'J. Biomol. NMR' ?
'J. Biomol. Struct. Dyn.' ?
'J. Inorg. Biochem.' ?
'J. Magn. Reson.' ?
'J. Mol. Biol.' ?
'J. Pept. Res.' ?
'J. Protein Chem.' ?
'Mol. Cell' ?
Nature ?
'Nat. Struct. Biol.' ?
'Nucleic Acids Res.' ?
'Proc. Natl. Acad. Sci. U.S.A.' ?
'Protein Eng.' ?
Proteins ?
'Protein Sci.' ?
'Proteins: Struct. Funct. Genet.' ?
RNA ?
Science ?
Structure ?
'Structure (Cambridge MA U.S.)' ?
stop_
loop_
_item_examples.case
;
J. Biomol. NMR
;
stop_
_item_type.code 'line'
save_
save__citation.journal_name_full
_item_description.description
;
Full name used by the journal.
;
_item.name '_citation.journal_name_full'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Journal of Biomolecular NMR
;
stop_
_item_type.code 'line'
save_
save__citation.journal_volume
_item_description.description
;
Volume designation used by the journal.
;
_item.name '_citation.journal_volume'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
23
;
stop_
_item_type.code 'line'
save_
save__citation.journal_issue
_item_description.description
;
Issue designation used by the journal.
;
_item.name '_citation.journal_issue'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
4
;
stop_
_item_type.code 'line'
save_
save__citation.journal_astm
_item_description.description
;
ASTM identification code for the journal
;
_item.name '_citation.journal_astm'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__citation.journal_issn
_item_description.description
;
ISSN identification code for the journal
;
_item.name '_citation.journal_issn'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__citation.journal_csd
_item_description.description
;
CSD identification code for the journal
;
_item.name '_citation.journal_csd'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__citation.book_title
_item_description.description
;
The name of the book where the citation is located.
;
_item.name '_citation.book_title'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
NMR Studies of Calcium Binding Proteins
;
stop_
_item_type.code 'text'
save_
save__citation.book_chapter_title
_item_description.description
;
Title of the chapter from the book
;
_item.name '_citation.book_chapter_title'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Calmodulin
;
stop_
_item_type.code 'text'
save_
save__citation.book_volume
_item_description.description
;
Volume designation for the book.
;
_item.name '_citation.book_volume'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
2
;
stop_
_item_type.code 'line'
save_
save__citation.book_series
_item_description.description
;
Series designation for the book
;
_item.name '_citation.book_series'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
12
;
stop_
_item_type.code 'line'
save_
save__citation.book_publisher
_item_description.description
;
Publisher of the book
;
_item.name '_citation.book_publisher'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Wiley & Sons
;
stop_
_item_type.code 'line'
save_
save__citation.book_publisher_city
_item_description.description
;
City where the book publisher is located
;
_item.name '_citation.book_publisher_city'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
New York
;
stop_
_item_type.code 'line'
save_
save__citation.book_isbn
_item_description.description
;
ISBN code assigned to the book.
;
_item.name '_citation.book_isbn'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__citation.conference_title
_item_description.description
;
Title of the conference
;
_item.name '_citation.conference_title'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Frontiers in NMR VI
;
stop_
_item_type.code 'line'
save_
save__citation.conference_site
_item_description.description
;
Site of the conference$ city$ resort$ etc.
;
_item.name '_citation.conference_site'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Keystone
;
stop_
_item_type.code 'line'
save_
save__citation.conference_state_province
_item_description.description
;
State$ province$ etc. where conference took place
;
_item.name '_citation.conference_state_province'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Colorado
;
stop_
_item_type.code 'line'
save_
save__citation.conference_country
_item_description.description
;
Country where conference was located
;
_item.name '_citation.conference_country'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
USA
;
stop_
_item_type.code 'line'
save_
save__citation.conference_start_date
_item_description.description
;
Date conference began
;
_item.name '_citation.conference_start_date'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
1998-02-09
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__citation.conference_end_date
_item_description.description
;
Date conference ended
;
_item.name '_citation.conference_end_date'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
1998-02-15
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__citation.conference_abstract_number
_item_description.description
;
Code assigned to the conference abstract
;
_item.name '_citation.conference_abstract_number'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
125
;
stop_
_item_type.code 'line'
save_
save__citation.thesis_institution
_item_description.description
;
Academic or research institution that granted the degree awarded for the
thesis cited in the saveframe.
;
_item.name '_citation.thesis_institution'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
Purdue University
;
stop_
_item_type.code 'line'
save_
save__citation.thesis_institution_city
_item_description.description
;
City where the institution awarding the degree is located.
;
_item.name '_citation.thesis_institution_city'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
West Lafayette
;
stop_
_item_type.code 'line'
save_
save__citation.thesis_institution_country
_item_description.description
;
Country where the institution awarding the degree is located.
;
_item.name '_citation.thesis_institution_country'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
USA
;
stop_
_item_type.code 'line'
save_
save__citation.www_url
_item_description.description
;
A World Wide Web universal locator that identifies the location of the
cited material on the WWW.
;
_item.name '_citation.www_url'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__citation.page_first
_item_description.description
;
First page of the published article
;
_item.name '_citation.page_first'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
123
;
stop_
_item_type.code 'line'
save_
save__citation.page_last
_item_description.description
;
Last page of the published article
;
_item.name '_citation.page_last'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
145
;
stop_
_item_type.code 'line'
save_
save__citation.year
_item_description.description
;
Calendar year when the article was published.
;
_item.name '_citation.year'
_item.category_id 'citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
2003
;
stop_
_item_type.code 'code'
save_
save__citation.details
_item_description.description
;
Additional information relevant to the data in the current saveframe or
to a specific data item is entered as a value to this tag. The information entered
must supplement information already present. Whenever possible data should
associated with specific data tags and not included in the value to a '_Details' tag.
;
_item.name '_citation.details'
_item.category_id 'citation'
_item.mandatory_code no
loop_
_item_examples.case
;
The first and second authors contributed equally to this publication.
;
stop_
_item_type.code 'text'
save_
save_citation_author
_category.description
;
Items in the citation_author category define the authors and the order of the names for a citation.
;
_category.id 'citation_author'
_category.mandatory_code yes
loop_
_category_key.name
'_citation_author.ordinal'
'_citation_author.entry_id'
'_citation_author.citation_id'
stop_
loop_
_category_group.id
'inclusive_group'
'citations'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__citation_author.ordinal
_item_description.description
;
Integer value defining the position of the author's name in the list of authors.
;
_item.name '_citation_author.ordinal'
_item.category_id 'citation_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__citation_author.given_name
_item_description.description
;
The name given the author at birth or currently used by the author for
publication purposes. Can be an initial if the author uses a second name as a full
name when publishing.
;
_item.name '_citation_author.given_name'
_item.category_id 'citation_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
John
;
stop_
_item_type.code 'line'
save_
save__citation_author.family_name
_item_description.description
;
The family name of the author.
;
_item.name '_citation_author.family_name'
_item.category_id 'citation_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
Doe
;
stop_
_item_type.code 'line'
save_
save__citation_author.first_initial
_item_description.description
;
Initial of the author's first name.
;
_item.name '_citation_author.first_initial'
_item.category_id 'citation_author'
_item.mandatory_code no
loop_
_item_examples.case
;
J.
;
stop_
_item_type.code 'line'
save_
save__citation_author.middle_initials
_item_description.description
;
The initials for the author's middle names. A name can be used here, if
the author uses a middle name for publications.
;
_item.name '_citation_author.middle_initials'
_item.category_id 'citation_author'
_item.mandatory_code no
loop_
_item_examples.case
;
L.R.
;
stop_
_item_type.code 'line'
save_
save__citation_author.family_title
_item_description.description
;
A common family title (not a professional title).
;
_item.name '_citation_author.family_title'
_item.category_id 'citation_author'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
Sr. Senior
Jr. Junior
I First
II Second
III Third
IV Fourth
stop_
loop_
_item_examples.case
;
Jr.
;
stop_
_item_type.code 'line'
save_
save__citation_author.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_citation_author.entry_id'
_item.category_id 'citation_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__citation_author.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_citation_author.citation_id'
_item.category_id 'citation_author'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_citation_keyword
_category.description
;
Items in the citation_keyword category capture keywords that describe the contents of a citation.
;
_category.id 'citation_keyword'
_category.mandatory_code yes
loop_
_category_key.name
'_citation_keyword.keyword'
'_citation_keyword.entry_id'
'_citation_keyword.citation_id'
stop_
loop_
_category_group.id
'inclusive_group'
'citations'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__citation_keyword.keyword
_item_description.description
;
A single word or very brief phrase that characterizes the citation.
;
_item.name '_citation_keyword.keyword'
_item.category_id 'citation_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
NMR
;
stop_
_item_type.code 'line'
save_
save__citation_keyword.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_citation_keyword.entry_id'
_item.category_id 'citation_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__citation_keyword.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_citation_keyword.citation_id'
_item.category_id 'citation_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_citation_editor
_category.description
;
Items in the citation_editor category define the editors and the order of the names for a citaiton.
;
_category.id 'citation_editor'
_category.mandatory_code yes
loop_
_category_key.name
'_citation_editor.ordinal'
'_citation_editor.entry_id'
'_citation_editor.citation_id'
stop_
loop_
_category_group.id
'inclusive_group'
'citations'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__citation_editor.ordinal
_item_description.description
;
Integer value defining the position of the editor's name in the list of editors.
;
_item.name '_citation_editor.ordinal'
_item.category_id 'citation_editor'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__citation_editor.given_name
_item_description.description
;
The name given the editor at birth or currently used by the editor for
publication purposes. Can be an initial if the editor uses a second name as a full
name when publishing.
;
_item.name '_citation_editor.given_name'
_item.category_id 'citation_editor'
_item.mandatory_code yes
loop_
_item_examples.case
;
John
;
stop_
_item_type.code 'line'
save_
save__citation_editor.family_name
_item_description.description
;
The family name of the editor.
;
_item.name '_citation_editor.family_name'
_item.category_id 'citation_editor'
_item.mandatory_code yes
loop_
_item_examples.case
;
Doe
;
stop_
_item_type.code 'line'
save_
save__citation_editor.first_initial
_item_description.description
;
The editor's initial for their first name.
;
_item.name '_citation_editor.first_initial'
_item.category_id 'citation_editor'
_item.mandatory_code no
loop_
_item_examples.case
;
T.
;
stop_
_item_type.code 'line'
save_
save__citation_editor.middle_initials
_item_description.description
;
The initials for the editor's middle names. A name can be used here, if
the editor uses a middle name for publications.
;
_item.name '_citation_editor.middle_initials'
_item.category_id 'citation_editor'
_item.mandatory_code no
loop_
_item_examples.case
;
G.
;
stop_
_item_type.code 'line'
save_
save__citation_editor.family_title
_item_description.description
;
A common family title (not a professional title).
;
_item.name '_citation_editor.family_title'
_item.category_id 'citation_editor'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
Sr. Senior
Jr. Junior
I First
II Second
III Third
IV Fourth
stop_
loop_
_item_examples.case
;
II
;
stop_
_item_type.code 'line'
save_
save__citation_editor.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_citation_editor.entry_id'
_item.category_id 'citation_editor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__citation_editor.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_citation_editor.citation_id'
_item.category_id 'citation_editor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly
_category.description
;
Items in the assembly category describe the molecular assembly studied.
;
_category.id 'assembly'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly.entry_id'
'_assembly.id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_assembly.sf_category'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly.sf_framecode
_item_description.description
;
A descriptive label for the molecular assembly studied.
;
_item.name '_assembly.sf_framecode'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly.entry_id'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly.id
_item_description.description
;
A code that uniquely identifies the molecular assembly described in the
saveframe.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_assembly.id' 'assembly' yes
'_assembly_type.assembly_id' 'assembly_type' yes
'_entity_assembly.assembly_id' 'entity_assembly' yes
'_struct_asym.assembly_id' 'struct_asym' yes
'_assembly_db_link.assembly_id' 'assembly_db_link' yes
'_assembly_common_name.assembly_id' 'assembly_common_name' yes
'_assembly_systematic_name.assembly_id' 'assembly_systematic_name' yes
'_assembly_interaction.assembly_id' 'assembly_interaction' yes
'_chem_comp_assembly.assembly_id' 'chem_comp_assembly' yes
'_pdbx_poly_seq_scheme.assembly_id' 'pdbx_poly_seq_scheme' yes
'_pdbx_nonpoly_scheme.assembly_id' 'pdbx_nonpoly_scheme' yes
'_atom_type.assembly_id' 'atom_type' yes
'_atom.assembly_id' 'atom' yes
'_bond.assembly_id' 'bond' yes
'_deleted_atom.assembly_id' 'deleted_atom' yes
'_assembly_bio_function.assembly_id' 'assembly_bio_function' yes
'_angle.assembly_id' 'angle' yes
'_torsion_angle.assembly_id' 'torsion_angle' yes
'_assembly_segment.assembly_id' 'assembly_segment' yes
'_assembly_segment_description.assembly_id' 'assembly_segment_description' yes
'_assembly_keyword.assembly_id' 'assembly_keyword' yes
'_assembly_citation.assembly_id' 'assembly_citation' yes
'_author_annotation.assembly_id' 'author_annotation' yes
'_sample_component.assembly_id' 'sample_component' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_assembly_type.assembly_id' '_assembly.id'
'_entity_assembly.assembly_id' '_assembly.id'
'_struct_asym.assembly_id' '_assembly.id'
'_assembly_db_link.assembly_id' '_assembly.id'
'_assembly_common_name.assembly_id' '_assembly.id'
'_assembly_systematic_name.assembly_id' '_assembly.id'
'_assembly_interaction.assembly_id' '_assembly.id'
'_chem_comp_assembly.assembly_id' '_assembly.id'
'_pdbx_poly_seq_scheme.assembly_id' '_assembly.id'
'_pdbx_nonpoly_scheme.assembly_id' '_assembly.id'
'_atom_type.assembly_id' '_assembly.id'
'_atom.assembly_id' '_assembly.id'
'_bond.assembly_id' '_assembly.id'
'_deleted_atom.assembly_id' '_assembly.id'
'_assembly_bio_function.assembly_id' '_assembly.id'
'_angle.assembly_id' '_assembly.id'
'_torsion_angle.assembly_id' '_assembly.id'
'_assembly_segment.assembly_id' '_assembly.id'
'_assembly_segment_description.assembly_id' '_assembly.id'
'_assembly_keyword.assembly_id' '_assembly.id'
'_assembly_citation.assembly_id' '_assembly.id'
'_author_annotation.assembly_id' '_assembly.id'
'_sample_component.assembly_id' '_assembly.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly.name
_item_description.description
;
Brief descriptive name for the molecular assembly studied.
;
_item.name '_assembly.name'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
'p53 tetramer'
;
stop_
_item_type.code 'line'
save_
save__assembly.bmrb_code
_item_description.description
;
Unique identifier for the molecular system in the BMRB library of molecular
system definitions.
;
_item.name '_assembly.bmrb_code'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly.number_of_components
_item_description.description
;
An integer that represents the total number of molecular components that
comprise the molecular system.
;
_item.name '_assembly.number_of_components'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
4
;
stop_
_item_type.code 'int'
save_
save__assembly.organic_ligands
_item_description.description
;
Total number of organic ligands known to exist in the full molecular system.
;
_item.name '_assembly.organic_ligands'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.metal_ions
_item_description.description
;
Total number of metal ions known to exist in the molecular system
;
_item.name '_assembly.metal_ions'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.non_standard_bonds
_item_description.description
;
The molecular assembly contains covalent bonds such as cross-linking disulfide
bonds; non-standard residue-residue bonds; ligand-residue bonds; or metal
coordination bonds.
;
_item.name '_assembly.non_standard_bonds'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.ambiguous_conformational_states
_item_description.description
;
A yes/no flag automatically filled in by BMRB software on the basis of
the information (tag _Molecule_ambiguous conformational_states) provided in the
saveframes used to described the molecules in the system.
;
_item.name '_assembly.ambiguous_conformational_states'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.ambiguous_chem_comp_sites
_item_description.description
;
A yes/no flag automatically filled in by BMRB software on the basis of
information (tag _Mol_ambiguous_moiety_sites) provided in the saveframes used to
described the molecules in the system.
;
_item.name '_assembly.ambiguous_chem_comp_sites'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.molecules_in_chemical_exchange
_item_description.description
;
A yes/no flag that indicates when two molecular components in the system
are in chemical exchange (I.e. a ligand that exists in both the free and bound state).
;
_item.name '_assembly.molecules_in_chemical_exchange'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.paramagnetic
_item_description.description
;
A Yes or No flag used to describe whether the system is paramagnetic.
;
_item.name '_assembly.paramagnetic'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__assembly.thiol_state
_item_description.description
;
Description of the state of the thiol groups in the molecular system.
;
_item.name '_assembly.thiol_state'
_item.category_id 'assembly'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'all disulfide bound' ?
'all other bound' ?
'all free' ?
'free and bound' ?
'not present' ?
'not available' ?
unknown ?
'not reported' ?
'free and disulfide bound' ?
'free and other bound' ?
'free disulfide and other bound' ?
'disulfide and other bound' ?
stop_
loop_
_item_examples.case
;
all disulfide bound
;
stop_
_item_type.code 'line'
save_
save__assembly.molecular_mass
_item_description.description
;
Mass of the molecular system in Daltons. This value may be approximate.
;
_item.name '_assembly.molecular_mass'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
17600
;
stop_
_item_type.code 'float'
save_
save__assembly.enzyme_commission_number
_item_description.description
;
The Enzyme Commission decimal code (number) assigned to the protein or
molecular assembly, if available.
;
_item.name '_assembly.enzyme_commission_number'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
2.1.5.8.2
;
stop_
_item_type.code 'line'
save_
save__assembly.details
_item_description.description
;
Text description for the molecular system studied.
;
_item.name '_assembly.details'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assembly.db_query_date
_item_description.description
;
Date the database was queried to derive links to the molecular assembly
studied. GenBank is the database queried for these links.
;
_item.name '_assembly.db_query_date'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__assembly.db_query_revised_last_date
_item_description.description
;
The last date when new links to the molecular assembly were found through
the database query.
;
_item.name '_assembly.db_query_revised_last_date'
_item.category_id 'assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save_assembly_type
_category.description
;
Items in the assembly_type category describe the kind of assembly studied. These are keywords that are specific to a description of the assembly in terms of the types and number of components that make up the assembly.
;
_category.id 'assembly_type'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_type.type'
'_assembly_type.entry_id'
'_assembly_type.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_type.type
_item_description.description
;
Enumerated list of brief descriptive phrases that provide a loose way of
classifying the system. A system may fit more than one item in the list and all
appropriate values may be used for any specific system.
;
_item.name '_assembly_type.type'
_item.category_id 'assembly_type'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'protein monomer' ?
'protein homo-multimer' ?
'protein hetero-multimer' ?
'RNA single strand' ?
'RNA double strand' ?
'DNA single strand' ?
'DNA double strand' ?
'DNA-RNA hybrid' ?
polysaccharide ?
'protein-nucleic acid complex' ?
'protein-inhibitor complex' ?
'protein-drug complex' ?
'protein-ligand complex' ?
'protein-protein complex' ?
'protein-DNA complex' ?
'protein-DNA-ligand complex' ?
'protein-DNA-inhibitor complex' ?
'protein-RNA complex' ?
'protein-RNA-ligand complex' ?
'protein-RNA-inhibitor complex' ?
'protein-carbohydrate complex' ?
'DNA-drug complex' ?
'DNA-RNA complex' ?
'RNA-drug complex' ?
stop_
loop_
_item_examples.case
;
protein monomer
;
stop_
_item_type.code 'line'
save_
save__assembly_type.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_type.entry_id'
_item.category_id 'assembly_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_type.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_type.assembly_id'
_item.category_id 'assembly_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_assembly
_category.description
;
Items in the entity_assembly category identify each molecule in the molecular assembly.
;
_category.id 'entity_assembly'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_assembly.id'
'_entity_assembly.entry_id'
'_entity_assembly.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_assembly.id
_item_description.description
;
Unique identifier for each component in the entity assembly.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_assembly.id' 'entity_assembly' yes
'_assembly_interaction.entity_assembly_id_1' 'assembly_interaction' yes
'_assembly_interaction.entity_assembly_id_2' 'assembly_interaction' yes
'_chem_comp_assembly.entity_assembly_id' 'chem_comp_assembly' yes
'_pdbx_poly_seq_scheme.entity_assembly_id' 'pdbx_poly_seq_scheme' yes
'_pdbx_nonpoly_scheme.entity_assembly_id' 'pdbx_nonpoly_scheme' yes
'_atom.entity_assembly_id' 'atom' yes
'_bond.entity_assembly_id_1' 'bond' yes
'_bond.entity_assembly_id_2' 'bond' yes
'_deleted_atom.entity_assembly_id' 'deleted_atom' yes
'_angle.entity_assembly_id_1' 'angle' yes
'_angle.entity_assembly_id_2' 'angle' yes
'_angle.entity_assembly_id_3' 'angle' yes
'_torsion_angle.entity_assembly_id_1' 'torsion_angle' yes
'_torsion_angle.entity_assembly_id_2' 'torsion_angle' yes
'_torsion_angle.entity_assembly_id_3' 'torsion_angle' yes
'_torsion_angle.entity_assembly_id_4' 'torsion_angle' yes
'_assembly_segment.entity_assembly_id' 'assembly_segment' yes
'_author_annotation.entity_assembly_id' 'author_annotation' yes
'_subsystem_component.entity_assembly_id' 'subsystem_component' yes
'_atom_chem_shift.entity_assembly_id' 'atom_chem_shift' yes
'_coupling_constant.entity_assembly_id_1' 'coupling_constant' yes
'_coupling_constant.entity_assembly_id_2' 'coupling_constant' yes
'_assigned_peak_chem_shift.entity_assembly_id' 'assigned_peak_chem_shift' yes
'_resonance_assignment.entity_assembly_id' 'resonance_assignment' yes
'_spin_system.entity_assembly_id' 'spin_system' yes
'_isotope_effect.entity_assembly_id' 'isotope_effect' yes
'_isotope_label_pattern.entity_assembly_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.entity_assembly_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.entity_assembly_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.entity_assembly_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.entity_assembly_id' 'theoretical_chem_shift' yes
'_rdc.entity_assembly_id_1' 'rdc' yes
'_rdc.entity_assembly_id_2' 'rdc' yes
'_dipolar_coupling.entity_assembly_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.entity_assembly_id_2' 'dipolar_coupling' yes
'_spectral_density.entity_assembly_id' 'spectral_density' yes
'_other_data.entity_assembly_id' 'other_data' yes
'_h_exch_rate.entity_assembly_id' 'h_exch_rate' yes
'_h_exch_protection_factor.entity_assembly_id' 'h_exch_protection_factor' yes
'_homonucl_noe.entity_assembly_id_1' 'homonucl_noe' yes
'_homonucl_noe.entity_assembly_id_2' 'homonucl_noe' yes
'_heteronucl_noe.entity_assembly_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.entity_assembly_id_2' 'heteronucl_noe' yes
'_t1.entity_assembly_id' 't1' yes
'_t1rho.entity_assembly_id' 't1rho' yes
'_t2.entity_assembly_id' 't2' yes
'_dipole_dipole_relax.entity_assembly_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.entity_assembly_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_entity_assembly_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_entity_assembly_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_entity_assembly_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_entity_assembly_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_entity_assembly_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_entity_assembly_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_entity_assembly_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_entity_assembly_id_2' 'cross_correlation_d_csa' yes
'_order_param.entity_assembly_id' 'order_param' yes
'_ph_titr_result.atom_observed_entity_assembly_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_entity_assembly_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.entity_assembly_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_exptl.entity_assembly_id' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_feature.entity_assembly_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.heavy_atom_entity_assembly_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_entity_assembly_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_entity_assembly_id' 'deduced_h_bond' yes
'_atom_site.label_entity_assembly_id' 'atom_site' yes
'_rep_conf.entity_assembly_id' 'rep_conf' yes
'_angular_order_param.entity_assembly_id' 'angular_order_param' yes
'_tertiary_struct.entity_assembly_id' 'tertiary_struct' yes
'_secondary_struct.entity_assembly_id' 'secondary_struct' yes
'_bond_annotation.entity_assembly_id_1' 'bond_annotation' yes
'_bond_annotation.entity_assembly_id_2' 'bond_annotation' yes
'_structure_interaction.entity_assembly_id_1' 'structure_interaction' yes
'_structure_interaction.entity_assembly_id_2' 'structure_interaction' yes
'_other_struct_feature.entity_assembly_id' 'other_struct_feature' yes
'_dist_constraint.entity_assembly_id' 'dist_constraint' yes
'_floating_chirality.entity_assembly_id_1' 'floating_chirality' yes
'_floating_chirality.entity_assembly_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.entity_assembly_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.entity_assembly_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.entity_assembly_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.entity_assembly_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.entity_assembly_id_1' 'rdc_constraint' yes
'_rdc_constraint.entity_assembly_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.entity_assembly_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.entity_assembly_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.entity_assembly_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.entity_assembly_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.entity_assembly_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_assembly_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_assembly_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_assembly_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_assembly_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.entity_assembly_id' 'h_chem_shift_constraint' yes
'_other_constraint_list.entity_assembly_id' 'other_constraint_list' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_assembly_interaction.entity_assembly_id_1' '_entity_assembly.id'
'_assembly_interaction.entity_assembly_id_2' '_entity_assembly.id'
'_chem_comp_assembly.entity_assembly_id' '_entity_assembly.id'
'_pdbx_poly_seq_scheme.entity_assembly_id' '_entity_assembly.id'
'_pdbx_nonpoly_scheme.entity_assembly_id' '_entity_assembly.id'
'_atom.entity_assembly_id' '_entity_assembly.id'
'_bond.entity_assembly_id_1' '_entity_assembly.id'
'_bond.entity_assembly_id_2' '_entity_assembly.id'
'_deleted_atom.entity_assembly_id' '_entity_assembly.id'
'_angle.entity_assembly_id_1' '_entity_assembly.id'
'_angle.entity_assembly_id_2' '_entity_assembly.id'
'_angle.entity_assembly_id_3' '_entity_assembly.id'
'_torsion_angle.entity_assembly_id_1' '_entity_assembly.id'
'_torsion_angle.entity_assembly_id_2' '_entity_assembly.id'
'_torsion_angle.entity_assembly_id_3' '_entity_assembly.id'
'_torsion_angle.entity_assembly_id_4' '_entity_assembly.id'
'_assembly_segment.entity_assembly_id' '_entity_assembly.id'
'_author_annotation.entity_assembly_id' '_entity_assembly.id'
'_subsystem_component.entity_assembly_id' '_entity_assembly.id'
'_atom_chem_shift.entity_assembly_id' '_entity_assembly.id'
'_coupling_constant.entity_assembly_id_1' '_entity_assembly.id'
'_coupling_constant.entity_assembly_id_2' '_entity_assembly.id'
'_assigned_peak_chem_shift.entity_assembly_id' '_entity_assembly.id'
'_resonance_assignment.entity_assembly_id' '_entity_assembly.id'
'_spin_system.entity_assembly_id' '_entity_assembly.id'
'_isotope_effect.entity_assembly_id' '_entity_assembly.id'
'_isotope_label_pattern.entity_assembly_id' '_entity_assembly.id'
'_mol_interaction_chem_shift.entity_assembly_id' '_entity_assembly.id'
'_cs_anisotropy.entity_assembly_id' '_entity_assembly.id'
'_chem_shielding_tensor.entity_assembly_id' '_entity_assembly.id'
'_theoretical_chem_shift.entity_assembly_id' '_entity_assembly.id'
'_rdc.entity_assembly_id_1' '_entity_assembly.id'
'_rdc.entity_assembly_id_2' '_entity_assembly.id'
'_dipolar_coupling.entity_assembly_id_1' '_entity_assembly.id'
'_dipolar_coupling.entity_assembly_id_2' '_entity_assembly.id'
'_spectral_density.entity_assembly_id' '_entity_assembly.id'
'_other_data.entity_assembly_id' '_entity_assembly.id'
'_h_exch_rate.entity_assembly_id' '_entity_assembly.id'
'_h_exch_protection_factor.entity_assembly_id' '_entity_assembly.id'
'_homonucl_noe.entity_assembly_id_1' '_entity_assembly.id'
'_homonucl_noe.entity_assembly_id_2' '_entity_assembly.id'
'_heteronucl_noe.entity_assembly_id_1' '_entity_assembly.id'
'_heteronucl_noe.entity_assembly_id_2' '_entity_assembly.id'
'_t1.entity_assembly_id' '_entity_assembly.id'
'_t1rho.entity_assembly_id' '_entity_assembly.id'
'_t2.entity_assembly_id' '_entity_assembly.id'
'_dipole_dipole_relax.entity_assembly_id_1' '_entity_assembly.id'
'_dipole_dipole_relax.entity_assembly_id_2' '_entity_assembly.id'
'_cross_correlation_dd.dipole_1_entity_assembly_id_1' '_entity_assembly.id'
'_cross_correlation_dd.dipole_1_entity_assembly_id_2' '_entity_assembly.id'
'_cross_correlation_dd.dipole_2_entity_assembly_id_1' '_entity_assembly.id'
'_cross_correlation_dd.dipole_2_entity_assembly_id_2' '_entity_assembly.id'
'_cross_correlation_d_csa.dipole_entity_assembly_id_1' '_entity_assembly.id'
'_cross_correlation_d_csa.dipole_entity_assembly_id_2' '_entity_assembly.id'
'_cross_correlation_d_csa.csa_entity_assembly_id_1' '_entity_assembly.id'
'_cross_correlation_d_csa.csa_entity_assembly_id_2' '_entity_assembly.id'
'_order_param.entity_assembly_id' '_entity_assembly.id'
'_ph_titr_result.atom_observed_entity_assembly_id' '_entity_assembly.id'
'_ph_titr_result.atom_titrated_entity_assembly_id' '_entity_assembly.id'
'_d_h_fractionation_factor.entity_assembly_id' '_entity_assembly.id'
'_deduced_secd_struct_exptl.entity_assembly_id' '_entity_assembly.id'
'_deduced_secd_struct_feature.entity_assembly_id' '_entity_assembly.id'
'_deduced_h_bond.heavy_atom_entity_assembly_id_1' '_entity_assembly.id'
'_deduced_h_bond.heavy_atom_entity_assembly_id_2' '_entity_assembly.id'
'_deduced_h_bond.hydrogen_atom_entity_assembly_id' '_entity_assembly.id'
'_atom_site.label_entity_assembly_id' '_entity_assembly.id'
'_rep_conf.entity_assembly_id' '_entity_assembly.id'
'_angular_order_param.entity_assembly_id' '_entity_assembly.id'
'_tertiary_struct.entity_assembly_id' '_entity_assembly.id'
'_secondary_struct.entity_assembly_id' '_entity_assembly.id'
'_bond_annotation.entity_assembly_id_1' '_entity_assembly.id'
'_bond_annotation.entity_assembly_id_2' '_entity_assembly.id'
'_structure_interaction.entity_assembly_id_1' '_entity_assembly.id'
'_structure_interaction.entity_assembly_id_2' '_entity_assembly.id'
'_other_struct_feature.entity_assembly_id' '_entity_assembly.id'
'_dist_constraint.entity_assembly_id' '_entity_assembly.id'
'_floating_chirality.entity_assembly_id_1' '_entity_assembly.id'
'_floating_chirality.entity_assembly_id_2' '_entity_assembly.id'
'_torsion_angle_constraint.entity_assembly_id_1' '_entity_assembly.id'
'_torsion_angle_constraint.entity_assembly_id_2' '_entity_assembly.id'
'_torsion_angle_constraint.entity_assembly_id_3' '_entity_assembly.id'
'_torsion_angle_constraint.entity_assembly_id_4' '_entity_assembly.id'
'_rdc_constraint.entity_assembly_id_1' '_entity_assembly.id'
'_rdc_constraint.entity_assembly_id_2' '_entity_assembly.id'
'_j_three_bond_constraint.entity_assembly_id_1' '_entity_assembly.id'
'_j_three_bond_constraint.entity_assembly_id_2' '_entity_assembly.id'
'_j_three_bond_constraint.entity_assembly_id_3' '_entity_assembly.id'
'_j_three_bond_constraint.entity_assembly_id_4' '_entity_assembly.id'
'_ca_cb_constraint.entity_assembly_id_1' '_entity_assembly.id'
'_ca_cb_constraint.entity_assembly_id_2' '_entity_assembly.id'
'_ca_cb_constraint.entity_assembly_id_3' '_entity_assembly.id'
'_ca_cb_constraint.entity_assembly_id_4' '_entity_assembly.id'
'_ca_cb_constraint.entity_assembly_id_5' '_entity_assembly.id'
'_h_chem_shift_constraint.entity_assembly_id' '_entity_assembly.id'
'_other_constraint_list.entity_assembly_id' '_entity_assembly.id'
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__entity_assembly.entity_assembly_name
_item_description.description
;
Name for this molecular component of the molecular assembly
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_assembly.entity_assembly_name' 'entity_assembly' no
'_bond.entity_assembly_name_1' 'bond' no
'_bond.entity_assembly_name_2' 'bond' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_bond.entity_assembly_name_1' '_entity_assembly.entity_assembly_name'
'_bond.entity_assembly_name_2' '_entity_assembly.entity_assembly_name'
stop_
loop_
_item_examples.case
;
subunit 1
;
stop_
_item_type.code 'line'
save_
save__entity_assembly.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_assembly.entity_id'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_assembly.entity_label
_item_description.description
;
This value points to the section of the entry where the chemical description
is given for all assembly components of this type. For a homodimer a chemical
description of the monomer is given only once and is pointed to by this value
although the assembly contains two monomers.
;
_item.name '_entity_assembly.entity_label'
_item.category_id 'entity_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
HIV protease polypeptide
;
stop_
_item_type.code 'label'
save_
save__entity_assembly.asym_id
_item_description.description
;
Pointer to '_Struct_asym.ID'
;
_item.name '_entity_assembly.asym_id'
_item.category_id 'entity_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
A
;
stop_
_item_default.value 'A'
_item_type.code 'code'
save_
save__entity_assembly.experimental_data_reported
_item_description.description
;
A flag indicating whether experimental data for a specific component of
the assembly is reported.
;
_item.name '_entity_assembly.experimental_data_reported'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entity_assembly.physical_state
_item_description.description
;
An enumerated list of descriptive terms used to define the conformational
state of the component of the assembly.
;
_item.name '_entity_assembly.physical_state'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
native ?
denatured ?
'molten globule' ?
unfolded ?
stop_
loop_
_item_examples.case
;
native
;
stop_
_item_default.value 'native'
_item_type.code 'line'
save_
save__entity_assembly.conformational_isomer
_item_description.description
;
A flag indicating whether the component of the system is a conformational
isomer of another component of the system.
;
_item.name '_entity_assembly.conformational_isomer'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity_assembly.chemical_exchange_state
_item_description.description
;
A flag indicating whether the component of the system is in chemical exchange
with another component of the system.
;
_item.name '_entity_assembly.chemical_exchange_state'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
no
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity_assembly.magnetic_equivalence_group_code
_item_description.description
;
Unique identifier for the group of assembly components within the assembly
that are magnetically equivalent in that only one set of NMR peaks are observed
for the group.
;
_item.name '_entity_assembly.magnetic_equivalence_group_code'
_item.category_id 'entity_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'code'
save_
save__entity_assembly.role
_item_description.description
;
The function of the asembly component within the assembly.
;
_item.name '_entity_assembly.role'
_item.category_id 'entity_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
catalytic unit
;
stop_
_item_type.code 'line'
save_
save__entity_assembly.details
_item_description.description
;
Text information describing the component of the assembly that is pertinent
to the component as found in the assembly. Specific details about the entity
are given in the entity category.
;
_item.name '_entity_assembly.details'
_item.category_id 'entity_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
The bound ATP is in slow exchange with the free form
;
stop_
_item_type.code 'text'
save_
save__entity_assembly.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_assembly.entry_id'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_assembly.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_entity_assembly.assembly_id'
_item.category_id 'entity_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_struct_asym
_category.description
;
category description not available
;
_category.id 'struct_asym'
_category.mandatory_code yes
loop_
_category_key.name
'_struct_asym.id'
'_struct_asym.entry_id'
'_struct_asym.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__struct_asym.id
_item_description.description
;
The value of '_Struct_asym.ID' must uniquely identify a record in the STRUCT_ASYM
list. Note that this item need not be a number; it can be any unique
identifier.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_struct_asym.id' 'struct_asym' yes
'_entity_assembly.asym_id' 'entity_assembly' yes
'_atom_site.label_asym_id' 'atom_site' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_entity_assembly.asym_id' '_struct_asym.id'
'_atom_site.label_asym_id' '_struct_asym.id'
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'code'
save_
save__struct_asym.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_struct_asym.entity_id'
_item.category_id 'struct_asym'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__struct_asym.pdbx_blank_pdb_chainid_flag
_item_description.description
;
A flag indicating that this entity was originally labeled with a blank
PDB chain id.
;
_item.name '_struct_asym.pdbx_blank_pdb_chainid_flag'
_item.category_id 'struct_asym'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
yes ?
no ?
stop_
loop_
_item_examples.case
;
no
;
stop_
_item_type.code 'line'
save_
save__struct_asym.pdbx_modified
_item_description.description
;
This data item indicates whether the structural elements are modified.
;
_item.name '_struct_asym.pdbx_modified'
_item.category_id 'struct_asym'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
yes ?
no ?
stop_
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'line'
save_
save__struct_asym.details
_item_description.description
;
A description of special aspects of this portion of the contents of the
asymmetric unit.
;
_item.name '_struct_asym.details'
_item.category_id 'struct_asym'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__struct_asym.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_struct_asym.entry_id'
_item.category_id 'struct_asym'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'code'
save_
save__struct_asym.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_struct_asym.assembly_id'
_item.category_id 'struct_asym'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_assembly_db_link
_category.description
;
Items in the assembly_db_link category capture information about databases and accession codes of entries related to the molecular assembly.
;
_category.id 'assembly_db_link'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_db_link.database_code'
'_assembly_db_link.accession_code'
'_assembly_db_link.entry_id'
'_assembly_db_link.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_db_link.author_supplied
_item_description.description
;
Flag indicating if the database accession number was supplied by the author .
;
_item.name '_assembly_db_link.author_supplied'
_item.category_id 'assembly_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_default.value 'Y'
_item_type.code 'yes_no'
save_
save__assembly_db_link.database_code
_item_description.description
;
Abbreviation for the database
;
_item.name '_assembly_db_link.database_code'
_item.category_id 'assembly_db_link'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
PDB 'Protein Data Bank'
BMRB 'BioMagResBank'
DBJ ?
EMBL ?
GenBank ?
PIR ?
PRF ?
REF ?
SWISS-PROT ?
stop_
loop_
_item_examples.case
;
PDB
;
stop_
_item_default.value 'PDB'
_item_type.code 'line'
save_
save__assembly_db_link.accession_code
_item_description.description
;
Accession code for the entry in the database.
;
_item.name '_assembly_db_link.accession_code'
_item.category_id 'assembly_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
1brv
;
stop_
_item_type.code 'line'
save_
save__assembly_db_link.entry_mol_code
_item_description.description
;
Code given to the molecule by the database where the entry is located.
;
_item.name '_assembly_db_link.entry_mol_code'
_item.category_id 'assembly_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_db_link.entry_mol_name
_item_description.description
;
Name of the molecular assembly in the database entry.
;
_item.name '_assembly_db_link.entry_mol_name'
_item.category_id 'assembly_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_db_link.entry_experimental_method
_item_description.description
;
Experimental method used to generate the data in the database entry.
;
_item.name '_assembly_db_link.entry_experimental_method'
_item.category_id 'assembly_db_link'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
X-ray
;
stop_
_item_type.code 'line'
save_
save__assembly_db_link.entry_structure_resolution
_item_description.description
;
The resolution of the data in a structure entry.
;
_item.name '_assembly_db_link.entry_structure_resolution'
_item.category_id 'assembly_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
1.3A
;
stop_
_item_type.code 'float'
save_
save__assembly_db_link.entry_relation_type
_item_description.description
;
Relationship between the database entry and this BMRB entry.
;
_item.name '_assembly_db_link.entry_relation_type'
_item.category_id 'assembly_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
Structure for the free repressor that is bound to DNA in this study.
;
stop_
_item_type.code 'line'
save_
save__assembly_db_link.entry_details
_item_description.description
;
Any text information relevant to the database entry.
;
_item.name '_assembly_db_link.entry_details'
_item.category_id 'assembly_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assembly_db_link.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_db_link.entry_id'
_item.category_id 'assembly_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_db_link.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_db_link.assembly_id'
_item.category_id 'assembly_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_common_name
_category.description
;
Items in the assembly_common_name category define common names associated with the molecular assembly.
;
_category.id 'assembly_common_name'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_common_name.name'
'_assembly_common_name.entry_id'
'_assembly_common_name.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_common_name.name
_item_description.description
;
Synonyms commonly used to name the molecular assembly.
;
_item.name '_assembly_common_name.name'
_item.category_id 'assembly_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
p53
;
stop_
_item_type.code 'line'
save_
save__assembly_common_name.type
_item_description.description
;
Common names may have different types (full names$ abbreviations$ etc.)
;
_item.name '_assembly_common_name.type'
_item.category_id 'assembly_common_name'
_item.mandatory_code no
loop_
_item_examples.case
;
abbreviation
;
stop_
_item_type.code 'line'
save_
save__assembly_common_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_common_name.entry_id'
_item.category_id 'assembly_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_common_name.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_common_name.assembly_id'
_item.category_id 'assembly_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_systematic_name
_category.description
;
Items in the assembly_systematic_name category capture systematic naming systems and the systematic name for the molecular assembly.
;
_category.id 'assembly_systematic_name'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_systematic_name.naming_system'
'_assembly_systematic_name.entry_id'
'_assembly_systematic_name.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_systematic_name.name
_item_description.description
;
Name for the molecular assembly that has been assigned by an organization
or derived using rules defined by an organization recognized by the scientific
community.
;
_item.name '_assembly_systematic_name.name'
_item.category_id 'assembly_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_systematic_name.naming_system
_item_description.description
;
A recognized or common systematic method used to name molecules and molecular
systems.
;
_item.name '_assembly_systematic_name.naming_system'
_item.category_id 'assembly_systematic_name'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
IUPAC ?
'CAS name' ?
'CAS registry number' ?
BMRB ?
stop_
loop_
_item_examples.case
;
CAS
;
stop_
_item_type.code 'line'
save_
save__assembly_systematic_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_systematic_name.entry_id'
_item.category_id 'assembly_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_systematic_name.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_systematic_name.assembly_id'
_item.category_id 'assembly_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_interaction
_category.description
;
Items in the assembly_interaction category capture information about the types of interactions between components of the molecular assembly.
;
_category.id 'assembly_interaction'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_interaction.id'
'_assembly_interaction.entry_id'
'_assembly_interaction.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_interaction.id
_item_description.description
;
Unique identifier for the interaction between two components of the assembly.
;
_item.name '_assembly_interaction.id'
_item.category_id 'assembly_interaction'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__assembly_interaction.entity_assembly_id_1
_item_description.description
;
Identifier for the first component of the assembly that is involved interaction.
Pointer to '_Entity_assembly.ID'
;
_item.name '_assembly_interaction.entity_assembly_id_1'
_item.category_id 'assembly_interaction'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__assembly_interaction.entity_assembly_id_2
_item_description.description
;
Identifier for the second component of the assembly involved in the interaction.
Pointer to '_Entity_assembly.ID'
;
_item.name '_assembly_interaction.entity_assembly_id_2'
_item.category_id 'assembly_interaction'
_item.mandatory_code yes
loop_
_item_examples.case
;
2
;
stop_
_item_type.code 'int'
save_
save__assembly_interaction.mol_interaction_type
_item_description.description
;
covalent- noncovalent/coordination- confromational/configurational exchange-
chemical exchange
;
_item.name '_assembly_interaction.mol_interaction_type'
_item.category_id 'assembly_interaction'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'Extremely slow exchange' ?
'Slow exchange' ?
'Intermediate exchange' ?
'Fast exchange' ?
'No interaction' ?
stop_
loop_
_item_examples.case
;
protein-protein
;
stop_
_item_type.code 'line'
save_
save__assembly_interaction.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_interaction.entry_id'
_item.category_id 'assembly_interaction'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_interaction.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_interaction.assembly_id'
_item.category_id 'assembly_interaction'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_chem_comp_assembly
_category.description
;
Items in the chem_comp_assembly category provide chemical component level nomenclature and mappings across both biopolymer and non-polymer components of the molecular assembly.
;
_category.id 'chem_comp_assembly'
_category.mandatory_code yes
loop_
_category_key.name
'_chem_comp_assembly.entity_assembly_id'
'_chem_comp_assembly.comp_index_id'
'_chem_comp_assembly.entry_id'
'_chem_comp_assembly.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_assembly.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_chem_comp_assembly.entity_assembly_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_assembly.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_chem_comp_assembly.entity_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_assembly.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_chem_comp_assembly.comp_index_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_assembly.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_assembly.comp_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_assembly.application_seq_num
_item_description.description
;
A sequence number from a sequence numbering scheme employed because of
a requirement of a software applications.
;
_item.name '_chem_comp_assembly.application_seq_num'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_assembly.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_chem_comp_assembly.seq_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_assembly.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_assembly.entry_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_assembly.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_chem_comp_assembly.assembly_id'
_item.category_id 'chem_comp_assembly'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_pdbx_poly_seq_scheme
_category.description
;
Items in the PDBX_poly_seq_scheme category provide residue level nomenclature mapping for polymer entities.
;
_category.id 'pdbx_poly_seq_scheme'
_category.mandatory_code yes
loop_
_category_key.name
'_pdbx_poly_seq_scheme.entity_assembly_id'
'_pdbx_poly_seq_scheme.comp_index_id'
'_pdbx_poly_seq_scheme.entry_id'
'_pdbx_poly_seq_scheme.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__pdbx_poly_seq_scheme.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_pdbx_poly_seq_scheme.entity_assembly_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_poly_seq_scheme.asym_id
_item_description.description
;
Pointer to '_Atom_site.Label_asym_ID'
;
_item.name '_pdbx_poly_seq_scheme.asym_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
1;A:2B3
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_pdbx_poly_seq_scheme.entity_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_poly_seq_scheme.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_pdbx_poly_seq_scheme.comp_index_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_poly_seq_scheme.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_pdbx_poly_seq_scheme.comp_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.comp_label
_item_description.description
;
Pointer to a saveframe of the category chem_comp.
;
_item.name '_pdbx_poly_seq_scheme.comp_label'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__pdbx_poly_seq_scheme.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq.Num'.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_pdbx_poly_seq_scheme.seq_id' 'pdbx_poly_seq_scheme' yes
'_chem_comp_assembly.seq_id' 'chem_comp_assembly' yes
'_atom.seq_id' 'atom' yes
'_atom.pdb_seq_id' 'atom' yes
'_bond.seq_id_1' 'bond' yes
'_bond.seq_id_2' 'bond' yes
'_deleted_atom.seq_id' 'deleted_atom' yes
'_angle.seq_id_1' 'angle' yes
'_angle.seq_id_2' 'angle' yes
'_angle.seq_id_3' 'angle' yes
'_torsion_angle.seq_id_1' 'torsion_angle' yes
'_torsion_angle.seq_id_2' 'torsion_angle' yes
'_torsion_angle.seq_id_3' 'torsion_angle' yes
'_torsion_angle.seq_id_4' 'torsion_angle' yes
'_assembly_segment.seq_id' 'assembly_segment' yes
'_author_annotation.seq_id' 'author_annotation' yes
'_author_annotation.seq_id_start' 'author_annotation' yes
'_author_annotation.seq_id_end' 'author_annotation' yes
'_entity_chimera_segment.seq_id_begin' 'entity_chimera_segment' yes
'_entity_chimera_segment.seq_id_end' 'entity_chimera_segment' yes
'_sample_component_atom_isotope.seq_id' 'sample_component_atom_isotope' yes
'_atom_chem_shift.seq_id' 'atom_chem_shift' yes
'_coupling_constant.seq_id_1' 'coupling_constant' yes
'_coupling_constant.seq_id_2' 'coupling_constant' yes
'_isotope_effect.seq_id' 'isotope_effect' yes
'_isotope_label_pattern.seq_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.seq_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.seq_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.seq_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.seq_id' 'theoretical_chem_shift' yes
'_rdc.seq_id_1' 'rdc' yes
'_rdc.seq_id_2' 'rdc' yes
'_dipolar_coupling.seq_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.seq_id_2' 'dipolar_coupling' yes
'_spectral_density.seq_id' 'spectral_density' yes
'_other_data.seq_id' 'other_data' yes
'_h_exch_rate.seq_id' 'h_exch_rate' yes
'_h_exch_protection_factor.seq_id' 'h_exch_protection_factor' yes
'_homonucl_noe.seq_id_1' 'homonucl_noe' yes
'_homonucl_noe.seq_id_2' 'homonucl_noe' yes
'_heteronucl_noe.seq_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.seq_id_2' 'heteronucl_noe' yes
'_t1.seq_id' 't1' yes
'_t1rho.seq_id' 't1rho' yes
'_t2.seq_id' 't2' yes
'_dipole_dipole_relax.seq_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.seq_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_seq_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_seq_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_seq_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_seq_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_seq_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_seq_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_seq_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_seq_id_2' 'cross_correlation_d_csa' yes
'_order_param.seq_id' 'order_param' yes
'_ph_titr_result.atom_observed_seq_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_seq_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.seq_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_exptl.seq_id_start' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_exptl.seq_id_end' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_feature.seq_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.heavy_atom_seq_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_seq_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_seq_id' 'deduced_h_bond' yes
'_terminal_residue.seq_id' 'terminal_residue' yes
'_rep_conf.seq_id' 'rep_conf' yes
'_angular_order_param.seq_id' 'angular_order_param' yes
'_tertiary_struct.seq_id' 'tertiary_struct' yes
'_secondary_struct.seq_id_start' 'secondary_struct' yes
'_secondary_struct.seq_id_end' 'secondary_struct' yes
'_bond_annotation.seq_id_1' 'bond_annotation' yes
'_bond_annotation.seq_id_2' 'bond_annotation' yes
'_structure_interaction.seq_id_1' 'structure_interaction' yes
'_structure_interaction.seq_id_2' 'structure_interaction' yes
'_other_struct_feature.seq_id' 'other_struct_feature' yes
'_dist_constraint.seq_id' 'dist_constraint' yes
'_floating_chirality.seq_id_1' 'floating_chirality' yes
'_floating_chirality.seq_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.seq_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.seq_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.seq_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.seq_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.seq_id_1' 'rdc_constraint' yes
'_rdc_constraint.seq_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.seq_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.seq_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.seq_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.seq_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.seq_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.seq_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.seq_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.seq_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.seq_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.seq_id' 'h_chem_shift_constraint' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_chem_comp_assembly.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_atom.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_atom.pdb_seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_bond.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_bond.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_deleted_atom.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_angle.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_angle.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_angle.seq_id_3' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle.seq_id_3' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle.seq_id_4' '_pdbx_poly_seq_scheme.seq_id'
'_assembly_segment.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_author_annotation.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_author_annotation.seq_id_start' '_pdbx_poly_seq_scheme.seq_id'
'_author_annotation.seq_id_end' '_pdbx_poly_seq_scheme.seq_id'
'_entity_chimera_segment.seq_id_begin' '_pdbx_poly_seq_scheme.seq_id'
'_entity_chimera_segment.seq_id_end' '_pdbx_poly_seq_scheme.seq_id'
'_sample_component_atom_isotope.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_atom_chem_shift.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_coupling_constant.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_coupling_constant.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_isotope_effect.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_isotope_label_pattern.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_mol_interaction_chem_shift.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_cs_anisotropy.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_chem_shielding_tensor.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_theoretical_chem_shift.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_rdc.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_rdc.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_dipolar_coupling.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_dipolar_coupling.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_spectral_density.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_other_data.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_h_exch_rate.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_h_exch_protection_factor.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_homonucl_noe.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_homonucl_noe.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_heteronucl_noe.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_heteronucl_noe.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_t1.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_t1rho.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_t2.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_dipole_dipole_relax.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_dipole_dipole_relax.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_dd.dipole_1_seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_dd.dipole_1_seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_dd.dipole_2_seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_dd.dipole_2_seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_d_csa.dipole_seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_d_csa.dipole_seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_d_csa.csa_seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_cross_correlation_d_csa.csa_seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_order_param.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_ph_titr_result.atom_observed_seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_ph_titr_result.atom_titrated_seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_d_h_fractionation_factor.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_deduced_secd_struct_exptl.seq_id_start' '_pdbx_poly_seq_scheme.seq_id'
'_deduced_secd_struct_exptl.seq_id_end' '_pdbx_poly_seq_scheme.seq_id'
'_deduced_secd_struct_feature.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_deduced_h_bond.heavy_atom_seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_deduced_h_bond.heavy_atom_seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_deduced_h_bond.hydrogen_atom_seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_terminal_residue.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_rep_conf.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_angular_order_param.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_tertiary_struct.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_secondary_struct.seq_id_start' '_pdbx_poly_seq_scheme.seq_id'
'_secondary_struct.seq_id_end' '_pdbx_poly_seq_scheme.seq_id'
'_bond_annotation.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_bond_annotation.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_structure_interaction.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_structure_interaction.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_other_struct_feature.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_dist_constraint.seq_id' '_pdbx_poly_seq_scheme.seq_id'
'_floating_chirality.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_floating_chirality.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle_constraint.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle_constraint.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle_constraint.seq_id_3' '_pdbx_poly_seq_scheme.seq_id'
'_torsion_angle_constraint.seq_id_4' '_pdbx_poly_seq_scheme.seq_id'
'_rdc_constraint.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_rdc_constraint.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_j_three_bond_constraint.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_j_three_bond_constraint.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_j_three_bond_constraint.seq_id_3' '_pdbx_poly_seq_scheme.seq_id'
'_j_three_bond_constraint.seq_id_4' '_pdbx_poly_seq_scheme.seq_id'
'_ca_cb_constraint.seq_id_1' '_pdbx_poly_seq_scheme.seq_id'
'_ca_cb_constraint.seq_id_2' '_pdbx_poly_seq_scheme.seq_id'
'_ca_cb_constraint.seq_id_3' '_pdbx_poly_seq_scheme.seq_id'
'_ca_cb_constraint.seq_id_4' '_pdbx_poly_seq_scheme.seq_id'
'_ca_cb_constraint.seq_id_5' '_pdbx_poly_seq_scheme.seq_id'
'_h_chem_shift_constraint.seq_id' '_pdbx_poly_seq_scheme.seq_id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_poly_seq_scheme.mon_id
_item_description.description
;
Pointer to '_Entity_poly_seq.Mon_ID'
;
_item.name '_pdbx_poly_seq_scheme.mon_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.pdb_seq_num
_item_description.description
;
PDB residue number.
;
_item.name '_pdbx_poly_seq_scheme.pdb_seq_num'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.auth_seq_num
_item_description.description
;
Pointer to '_Atom_site.Auth_seq_ID'
;
_item.name '_pdbx_poly_seq_scheme.auth_seq_num'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.pdb_mon_id
_item_description.description
;
PDB residue name.
;
_item.name '_pdbx_poly_seq_scheme.pdb_mon_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.auth_mon_id
_item_description.description
;
Pointer to '_Atom_site.Auth_comp_ID'
;
_item.name '_pdbx_poly_seq_scheme.auth_mon_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.pdb_strand_id
_item_description.description
;
PDB strand/chain id.
;
_item.name '_pdbx_poly_seq_scheme.pdb_strand_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.pdb_ins_code
_item_description.description
;
PDB insertion code.
;
_item.name '_pdbx_poly_seq_scheme.pdb_ins_code'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__pdbx_poly_seq_scheme.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_pdbx_poly_seq_scheme.entry_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_poly_seq_scheme.assembly_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_pdbx_poly_seq_scheme.assembly_id'
_item.category_id 'pdbx_poly_seq_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_pdbx_nonpoly_scheme
_category.description
;
Items in the PDBX_nonpoly_scheme category provide residue level nomenclature mapping for non-polymer entities.
;
_category.id 'pdbx_nonpoly_scheme'
_category.mandatory_code yes
loop_
_category_key.name
'_pdbx_nonpoly_scheme.entity_assembly_id'
'_pdbx_nonpoly_scheme.entry_id'
'_pdbx_nonpoly_scheme.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__pdbx_nonpoly_scheme.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_pdbx_nonpoly_scheme.entity_assembly_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_nonpoly_scheme.asym_id
_item_description.description
;
Pointer to '_Atom_site.Label_asym_ID'
;
_item.name '_pdbx_nonpoly_scheme.asym_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_pdbx_nonpoly_scheme.entity_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_nonpoly_scheme.mon_id
_item_description.description
;
Pointer to _Atom_site.Label_comp_ID'
;
_item.name '_pdbx_nonpoly_scheme.mon_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.comp_index_id
_item_description.description
;
?
;
_item.name '_pdbx_nonpoly_scheme.comp_index_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__pdbx_nonpoly_scheme.comp_id
_item_description.description
;
?
;
_item.name '_pdbx_nonpoly_scheme.comp_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.pdb_seq_num
_item_description.description
;
PDB residue number.
;
_item.name '_pdbx_nonpoly_scheme.pdb_seq_num'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.auth_seq_num
_item_description.description
;
Pointer to '_Atom_site.Auth_seq_ID'
;
_item.name '_pdbx_nonpoly_scheme.auth_seq_num'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.pdb_mon_id
_item_description.description
;
PDB residue name.
;
_item.name '_pdbx_nonpoly_scheme.pdb_mon_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.auth_mon_id
_item_description.description
;
Pointer to '_Atom_site.Auth_comp_ID'
;
_item.name '_pdbx_nonpoly_scheme.auth_mon_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.pdb_strand_id
_item_description.description
;
PDB strand/chain id.
;
_item.name '_pdbx_nonpoly_scheme.pdb_strand_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.pdb_ins_code
_item_description.description
;
PDB insertion code.
;
_item.name '_pdbx_nonpoly_scheme.pdb_ins_code'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_pdbx_nonpoly_scheme.entry_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__pdbx_nonpoly_scheme.assembly_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_pdbx_nonpoly_scheme.assembly_id'
_item.category_id 'pdbx_nonpoly_scheme'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_atom_type
_category.description
;
Items in the atom_type category describe atoms from the periodic table.
;
_category.id 'atom_type'
_category.mandatory_code yes
loop_
_category_key.name
'_atom_type.id'
'_atom_type.entry_id'
'_atom_type.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__atom_type.id
_item_description.description
;
Integer value that uniquely defines the atom type. The primary key for
this table.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_atom_type.id' 'atom_type' no
'_atom.atom_type_id' 'atom' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_atom.atom_type_id' '_atom_type.id'
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__atom_type.symbol
_item_description.description
;
Standard IUPAC atom symbol
;
_item.name '_atom_type.symbol'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
C
;
stop_
_item_type.code 'code'
save_
save__atom_type.atomic_number
_item_description.description
;
Atom atomic number
;
_item.name '_atom_type.atomic_number'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
6
;
stop_
_item_type.code 'int'
save_
save__atom_type.isotope_number
_item_description.description
;
Atom isotope number
;
_item.name '_atom_type.isotope_number'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
13
;
stop_
_item_type.code 'int'
save_
save__atom_type.oxidation_number
_item_description.description
;
Atom oxidation number
;
_item.name '_atom_type.oxidation_number'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
0
;
stop_
_item_type.code 'code'
save_
save__atom_type.paramagnetic
_item_description.description
;
Flag indicating if the atom is paramagnetic.
;
_item.name '_atom_type.paramagnetic'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
no
;
stop_
_item_type.code 'yes_no'
save_
save__atom_type.electron_configuration
_item_description.description
;
Electron configuration for the atom
;
_item.name '_atom_type.electron_configuration'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__atom_type.unpaired_electron_number
_item_description.description
;
Number of unpaired electrons on the atom
;
_item.name '_atom_type.unpaired_electron_number'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
0
;
stop_
_item_type.code 'int'
save_
save__atom_type.atomic_mass
_item_description.description
;
Atom atomic mass
;
_item.name '_atom_type.atomic_mass'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__atom_type.van_der_vaals_radii
_item_description.description
;
van der Valls radii for the atom
;
_item.name '_atom_type.van_der_vaals_radii'
_item.category_id 'atom_type'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__atom_type.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_atom_type.entry_id'
_item.category_id 'atom_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom_type.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_atom_type.assembly_id'
_item.category_id 'atom_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_atom
_category.description
;
Items in the atom category provide atom level nomenclature and mappings for polymer and non-polymer components in the molecular assembly.
;
_category.id 'atom'
_category.mandatory_code yes
loop_
_category_key.name
'_atom.assembly_atom_id'
'_atom.entry_id'
'_atom.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__atom.assembly_atom_id
_item_description.description
;
A value that uniquely identifies the atom from all other atoms in the molecular
assembly.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_atom.assembly_atom_id' 'atom' yes
'_bond.assembly_atom_id_1' 'bond' yes
'_bond.assembly_atom_id_2' 'bond' yes
'_deleted_atom.assembly_atom_id' 'deleted_atom' yes
'_angle.assembly_atom_id_1' 'angle' yes
'_angle.assembly_atom_id_2' 'angle' yes
'_angle.assembly_atom_id_3' 'angle' yes
'_torsion_angle.assembly_atom_id_1' 'torsion_angle' yes
'_torsion_angle.assembly_atom_id_2' 'torsion_angle' yes
'_torsion_angle.assembly_atom_id_3' 'torsion_angle' yes
'_torsion_angle.assembly_atom_id_4' 'torsion_angle' yes
'_assembly_segment.assembly_atom_id' 'assembly_segment' yes
'_author_annotation.assembly_atom_id' 'author_annotation' yes
'_sample_component_atom_isotope.assembly_atom_id' 'sample_component_atom_isotope' yes
'_atom_chem_shift.assembly_atom_id' 'atom_chem_shift' yes
'_coupling_constant.assembly_atom_id_1' 'coupling_constant' yes
'_coupling_constant.assembly_atom_id_2' 'coupling_constant' yes
'_assigned_peak_chem_shift.assembly_atom_id' 'assigned_peak_chem_shift' yes
'_resonance_assignment.assembly_atom_id' 'resonance_assignment' yes
'_isotope_effect.assembly_atom_id' 'isotope_effect' yes
'_isotope_label_pattern.assembly_atom_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.assembly_atom_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.assembly_atom_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.assembly_atom_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.assembly_atom_id' 'theoretical_chem_shift' yes
'_rdc.assembly_atom_id_1' 'rdc' yes
'_rdc.assembly_atom_id_2' 'rdc' yes
'_dipolar_coupling.assembly_atom_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.assembly_atom_id_2' 'dipolar_coupling' yes
'_spectral_density.assembly_atom_id' 'spectral_density' yes
'_other_data.assembly_atom_id' 'other_data' yes
'_h_exch_rate.assembly_atom_id' 'h_exch_rate' yes
'_h_exch_protection_factor.assembly_atom_id' 'h_exch_protection_factor' yes
'_homonucl_noe.assembly_atom_id_1' 'homonucl_noe' yes
'_homonucl_noe.assembly_atom_id_2' 'homonucl_noe' yes
'_heteronucl_noe.assembly_atom_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.assembly_atom_id_2' 'heteronucl_noe' yes
'_t1.assembly_atom_id' 't1' yes
'_t1rho.assembly_atom_id' 't1rho' yes
'_t2.assembly_atom_id' 't2' yes
'_dipole_dipole_relax.assembly_atom_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.assembly_atom_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_entry_atom_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_entry_atom_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_entry_atom_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_entry_atom_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_entry_atom_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_entry_atom_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_entry_atom_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_entry_atom_id_2' 'cross_correlation_d_csa' yes
'_order_param.assembly_atom_id' 'order_param' yes
'_ph_titr_result.atom_observed_entry_atom_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_entry_atom_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.assembly_atom_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_feature.assembly_atom_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.heavy_atom_entry_atom_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_entry_atom_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_entry_atom_id' 'deduced_h_bond' yes
'_atom_site.assembly_atom_id' 'atom_site' yes
'_rep_conf.assembly_atom_id' 'rep_conf' yes
'_angular_order_param.assembly_atom_id' 'angular_order_param' yes
'_tertiary_struct.assembly_atom_id' 'tertiary_struct' yes
'_bond_annotation.assembly_atom_id_1' 'bond_annotation' yes
'_bond_annotation.assembly_atom_id_2' 'bond_annotation' yes
'_structure_interaction.assembly_atom_id_1' 'structure_interaction' yes
'_structure_interaction.assembly_atom_id_2' 'structure_interaction' yes
'_dist_constraint.assembly_atom_id' 'dist_constraint' yes
'_floating_chirality.assembly_atom_id_1' 'floating_chirality' yes
'_floating_chirality.assembly_atom_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.assembly_atom_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.assembly_atom_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.assembly_atom_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.assembly_atom_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.assembly_atom_id_1' 'rdc_constraint' yes
'_rdc_constraint.assembly_atom_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.assembly_atom_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.assembly_atom_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.assembly_atom_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.assembly_atom_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.assembly_atom_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.assembly_atom_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.assembly_atom_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.assembly_atom_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.assembly_atom_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.assembly_atom_id' 'h_chem_shift_constraint' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_bond.assembly_atom_id_1' '_atom.assembly_atom_id'
'_bond.assembly_atom_id_2' '_atom.assembly_atom_id'
'_deleted_atom.assembly_atom_id' '_atom.assembly_atom_id'
'_angle.assembly_atom_id_1' '_atom.assembly_atom_id'
'_angle.assembly_atom_id_2' '_atom.assembly_atom_id'
'_angle.assembly_atom_id_3' '_atom.assembly_atom_id'
'_torsion_angle.assembly_atom_id_1' '_atom.assembly_atom_id'
'_torsion_angle.assembly_atom_id_2' '_atom.assembly_atom_id'
'_torsion_angle.assembly_atom_id_3' '_atom.assembly_atom_id'
'_torsion_angle.assembly_atom_id_4' '_atom.assembly_atom_id'
'_assembly_segment.assembly_atom_id' '_atom.assembly_atom_id'
'_author_annotation.assembly_atom_id' '_atom.assembly_atom_id'
'_sample_component_atom_isotope.assembly_atom_id' '_atom.assembly_atom_id'
'_atom_chem_shift.assembly_atom_id' '_atom.assembly_atom_id'
'_coupling_constant.assembly_atom_id_1' '_atom.assembly_atom_id'
'_coupling_constant.assembly_atom_id_2' '_atom.assembly_atom_id'
'_assigned_peak_chem_shift.assembly_atom_id' '_atom.assembly_atom_id'
'_resonance_assignment.assembly_atom_id' '_atom.assembly_atom_id'
'_isotope_effect.assembly_atom_id' '_atom.assembly_atom_id'
'_isotope_label_pattern.assembly_atom_id' '_atom.assembly_atom_id'
'_mol_interaction_chem_shift.assembly_atom_id' '_atom.assembly_atom_id'
'_cs_anisotropy.assembly_atom_id' '_atom.assembly_atom_id'
'_chem_shielding_tensor.assembly_atom_id' '_atom.assembly_atom_id'
'_theoretical_chem_shift.assembly_atom_id' '_atom.assembly_atom_id'
'_rdc.assembly_atom_id_1' '_atom.assembly_atom_id'
'_rdc.assembly_atom_id_2' '_atom.assembly_atom_id'
'_dipolar_coupling.assembly_atom_id_1' '_atom.assembly_atom_id'
'_dipolar_coupling.assembly_atom_id_2' '_atom.assembly_atom_id'
'_spectral_density.assembly_atom_id' '_atom.assembly_atom_id'
'_other_data.assembly_atom_id' '_atom.assembly_atom_id'
'_h_exch_rate.assembly_atom_id' '_atom.assembly_atom_id'
'_h_exch_protection_factor.assembly_atom_id' '_atom.assembly_atom_id'
'_homonucl_noe.assembly_atom_id_1' '_atom.assembly_atom_id'
'_homonucl_noe.assembly_atom_id_2' '_atom.assembly_atom_id'
'_heteronucl_noe.assembly_atom_id_1' '_atom.assembly_atom_id'
'_heteronucl_noe.assembly_atom_id_2' '_atom.assembly_atom_id'
'_t1.assembly_atom_id' '_atom.assembly_atom_id'
'_t1rho.assembly_atom_id' '_atom.assembly_atom_id'
'_t2.assembly_atom_id' '_atom.assembly_atom_id'
'_dipole_dipole_relax.assembly_atom_id_1' '_atom.assembly_atom_id'
'_dipole_dipole_relax.assembly_atom_id_2' '_atom.assembly_atom_id'
'_cross_correlation_dd.dipole_1_entry_atom_id_1' '_atom.assembly_atom_id'
'_cross_correlation_dd.dipole_1_entry_atom_id_2' '_atom.assembly_atom_id'
'_cross_correlation_dd.dipole_2_entry_atom_id_1' '_atom.assembly_atom_id'
'_cross_correlation_dd.dipole_2_entry_atom_id_2' '_atom.assembly_atom_id'
'_cross_correlation_d_csa.dipole_entry_atom_id_1' '_atom.assembly_atom_id'
'_cross_correlation_d_csa.dipole_entry_atom_id_2' '_atom.assembly_atom_id'
'_cross_correlation_d_csa.csa_entry_atom_id_1' '_atom.assembly_atom_id'
'_cross_correlation_d_csa.csa_entry_atom_id_2' '_atom.assembly_atom_id'
'_order_param.assembly_atom_id' '_atom.assembly_atom_id'
'_ph_titr_result.atom_observed_entry_atom_id' '_atom.assembly_atom_id'
'_ph_titr_result.atom_titrated_entry_atom_id' '_atom.assembly_atom_id'
'_d_h_fractionation_factor.assembly_atom_id' '_atom.assembly_atom_id'
'_deduced_secd_struct_feature.assembly_atom_id' '_atom.assembly_atom_id'
'_deduced_h_bond.heavy_atom_entry_atom_id_1' '_atom.assembly_atom_id'
'_deduced_h_bond.heavy_atom_entry_atom_id_2' '_atom.assembly_atom_id'
'_deduced_h_bond.hydrogen_atom_entry_atom_id' '_atom.assembly_atom_id'
'_atom_site.assembly_atom_id' '_atom.assembly_atom_id'
'_rep_conf.assembly_atom_id' '_atom.assembly_atom_id'
'_angular_order_param.assembly_atom_id' '_atom.assembly_atom_id'
'_tertiary_struct.assembly_atom_id' '_atom.assembly_atom_id'
'_bond_annotation.assembly_atom_id_1' '_atom.assembly_atom_id'
'_bond_annotation.assembly_atom_id_2' '_atom.assembly_atom_id'
'_structure_interaction.assembly_atom_id_1' '_atom.assembly_atom_id'
'_structure_interaction.assembly_atom_id_2' '_atom.assembly_atom_id'
'_dist_constraint.assembly_atom_id' '_atom.assembly_atom_id'
'_floating_chirality.assembly_atom_id_1' '_atom.assembly_atom_id'
'_floating_chirality.assembly_atom_id_2' '_atom.assembly_atom_id'
'_torsion_angle_constraint.assembly_atom_id_1' '_atom.assembly_atom_id'
'_torsion_angle_constraint.assembly_atom_id_2' '_atom.assembly_atom_id'
'_torsion_angle_constraint.assembly_atom_id_3' '_atom.assembly_atom_id'
'_torsion_angle_constraint.assembly_atom_id_4' '_atom.assembly_atom_id'
'_rdc_constraint.assembly_atom_id_1' '_atom.assembly_atom_id'
'_rdc_constraint.assembly_atom_id_2' '_atom.assembly_atom_id'
'_j_three_bond_constraint.assembly_atom_id_1' '_atom.assembly_atom_id'
'_j_three_bond_constraint.assembly_atom_id_2' '_atom.assembly_atom_id'
'_j_three_bond_constraint.assembly_atom_id_3' '_atom.assembly_atom_id'
'_j_three_bond_constraint.assembly_atom_id_4' '_atom.assembly_atom_id'
'_ca_cb_constraint.assembly_atom_id_1' '_atom.assembly_atom_id'
'_ca_cb_constraint.assembly_atom_id_2' '_atom.assembly_atom_id'
'_ca_cb_constraint.assembly_atom_id_3' '_atom.assembly_atom_id'
'_ca_cb_constraint.assembly_atom_id_4' '_atom.assembly_atom_id'
'_ca_cb_constraint.assembly_atom_id_5' '_atom.assembly_atom_id'
'_h_chem_shift_constraint.assembly_atom_id' '_atom.assembly_atom_id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_atom.entity_assembly_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_atom.entity_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_atom.comp_index_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_atom.seq_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_atom.comp_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.atom_type_id
_item_description.description
;
Pointer to '_Atom_type.ID'
;
_item.name '_atom.atom_type_id'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.atom_id
_item_description.description
;
The value of _Atom.Atom_id must uniquely identify a record in the atom list.
;
_item.name '_atom.atom_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__atom.type_symbol
_item_description.description
;
The code used to identify the atom specie(s) representing this atom type.
Normally this code is the element symbol. The code may be composed of any character
except an underline with the additional proviso that digits designate an
oxidation state and must be followed by a + or - character.
;
_item.name '_atom.type_symbol'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_one_letter_code
_item_description.description
;
One-letter code used by the PDB for amino acids and nucleic acids.
;
_item.name '_atom.pdb_one_letter_code'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_strand_id
_item_description.description
;
PDB strand/chain id.
;
_item.name '_atom.pdb_strand_id'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_ins_code
_item_description.description
;
PDB insertion code.
;
_item.name '_atom.pdb_ins_code'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_asym_id
_item_description.description
;
Pointer to _Atom_site.Label_asym_id'.
;
_item.name '_atom.pdb_asym_id'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_atom.pdb_seq_id'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom.pdb_comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_atom.pdb_comp_id'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_group
_item_description.description
;
The group of atoms to which the atom site belongs. This data item is provided
for compatibility with the original Protein Data Bank format, and only for
that purpose.
;
_item.name '_atom.pdb_group'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_atom_id
_item_description.description
;
This data item is a pointer to '_Chem_comp_atom.Atom_id in the chem_comp_atom
category.
;
_item.name '_atom.pdb_atom_id'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.pdb_atom_type
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_atom.pdb_atom_type'
_item.category_id 'atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_atom.entry_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_atom.assembly_id'
_item.category_id 'atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_bond
_category.description
;
Items in the bond category define a unique identifier for each bond in the molecular assembly.
;
_category.id 'bond'
_category.mandatory_code yes
loop_
_category_key.name
'_bond.id'
'_bond.entry_id'
'_bond.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__bond.id
_item_description.description
;
Unique identifier for the bond being defined.
;
_item.name '_bond.id'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.type
_item_description.description
;
A descriptive phrase or word that characterized the bond.
;
_item.name '_bond.type'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
amide ?
covalent ?
directed ?
disulfide ?
ester ?
ether ?
hydrogen ?
'metal coordination' ?
peptide ?
thioether ?
stop_
loop_
_item_examples.case
;
disulfide
;
stop_
_item_type.code 'line'
save_
save__bond.order
_item_description.description
;
The order of the bond between two atoms (i.e.$ single$ double$ etc.)
;
_item.name '_bond.order'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
SING ?
DOUB ?
TRIP ?
AROM ?
PARTIAL-DOUBLE ?
DIRECTED ?
stop_
loop_
_item_examples.case
;
SING
;
stop_
_item_type.code 'line'
save_
save__bond.assembly_atom_id_1
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_bond.assembly_atom_id_1'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.entity_assembly_id_1
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_bond.entity_assembly_id_1'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.entity_assembly_name_1
_item_description.description
;
Pointer to '_Entity_assembly.Entity_assembly_name'
;
_item.name '_bond.entity_assembly_name_1'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__bond.entity_id_1
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_bond.entity_id_1'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.comp_id_1
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_bond.comp_id_1'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__bond.comp_index_id_1
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_bond.comp_index_id_1'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.seq_id_1
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_bond.seq_id_1'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
36
;
stop_
_item_type.code 'int'
save_
save__bond.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_bond.atom_id_1'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
SG
;
stop_
_item_type.code 'atcode'
save_
save__bond.assembly_atom_id_2
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_bond.assembly_atom_id_2'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.entity_assembly_id_2
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_bond.entity_assembly_id_2'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.entity_assembly_name_2
_item_description.description
;
Pointer to '_Entity_assembly.Entity_assembly_name'
;
_item.name '_bond.entity_assembly_name_2'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__bond.entity_id_2
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_bond.entity_id_2'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.comp_id_2
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_bond.comp_id_2'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__bond.comp_index_id_2
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_bond.comp_index_id_2'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__bond.seq_id_2
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_bond.seq_id_2'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
5
;
stop_
_item_type.code 'int'
save_
save__bond.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_bond.atom_id_2'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
SG
;
stop_
_item_type.code 'atcode'
save_
save__bond.auth_entity_assembly_name_1
_item_description.description
;
Enter the name given to the biopolymer or ligand as a component of the
molecular system where the first atom in the bond is located. For complex systems
that have many components, this might be something like 'alpha chain 1' or 'heme
3'. A pull down list of the names assigned to the molecular system components
in the section above is provided.
;
_item.name '_bond.auth_entity_assembly_name_1'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
monomer 1
;
stop_
_item_type.code 'line'
save_
save__bond.auth_seq_id_1
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_bond.auth_seq_id_1'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
13
;
stop_
_item_type.code 'code'
save_
save__bond.auth_comp_id_1
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_bond.auth_comp_id_1'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
CYS
;
stop_
_item_type.code 'code'
save_
save__bond.auth_atom_id_1
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_bond.auth_atom_id_1'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
SG
;
stop_
_item_type.code 'code'
save_
save__bond.auth_entity_assembly_name_2
_item_description.description
;
Enter the name given to the biopolymer or ligand as a component of the
molecular system where the second atom in the bond is located. For complex systems
that have many components, this might be something like 'alpha chain 1' or 'heme
3'. A pull down list of the names assigned to the molecular system components
in the section above is provided.
;
_item.name '_bond.auth_entity_assembly_name_2'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
monomer 2
;
stop_
_item_type.code 'line'
save_
save__bond.auth_seq_id_2
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_bond.auth_seq_id_2'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
42
;
stop_
_item_type.code 'code'
save_
save__bond.auth_comp_id_2
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_bond.auth_comp_id_2'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
CYS
;
stop_
_item_type.code 'code'
save_
save__bond.auth_atom_id_2
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_bond.auth_atom_id_2'
_item.category_id 'bond'
_item.mandatory_code no
loop_
_item_examples.case
;
SG
;
stop_
_item_type.code 'code'
save_
save__bond.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_bond.entry_id'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__bond.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_bond.assembly_id'
_item.category_id 'bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_deleted_atom
_category.description
;
Items in the deleted_atom category define the atoms that are deleted from molecular entities when intermolecular bonds are formed to construct the molecular assembly.
;
_category.id 'deleted_atom'
_category.mandatory_code yes
loop_
_category_key.name
'_deleted_atom.id'
'_deleted_atom.entry_id'
'_deleted_atom.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__deleted_atom.id
_item_description.description
;
Unique identifier used to index the rows of deleted atoms.
;
_item.name '_deleted_atom.id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__deleted_atom.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_deleted_atom.assembly_atom_id'
_item.category_id 'deleted_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__deleted_atom.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_deleted_atom.entity_assembly_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
2
;
stop_
_item_type.code 'int'
save_
save__deleted_atom.entity_assembly_name
_item_description.description
;
Provide the name given to the molecule in the molecular assembly where
the deleted atom is located. There may be several identical biopolymers in the
system, but the one where the specific atom has been deleted needs to be specified.
If the same atom is missing from multiple polymers in the system, a row in
this table needs to be created for each deleted atom. In this way a complete and
accurate chemical structure for the molecular system can be constructed.
;
_item.name '_deleted_atom.entity_assembly_name'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__deleted_atom.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_deleted_atom.entity_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__deleted_atom.entity_label
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_deleted_atom.entity_label'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__deleted_atom.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_deleted_atom.comp_index_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__deleted_atom.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_deleted_atom.seq_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
13
;
stop_
_item_type.code 'int'
save_
save__deleted_atom.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_deleted_atom.comp_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__deleted_atom.comp_label
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_deleted_atom.comp_label'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
CYS
;
stop_
_item_type.code 'label'
save_
save__deleted_atom.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_deleted_atom.atom_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
HG
;
stop_
_item_type.code 'atcode'
save_
save__deleted_atom.auth_seq_id
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_deleted_atom.auth_seq_id'
_item.category_id 'deleted_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
42
;
stop_
_item_type.code 'code'
save_
save__deleted_atom.auth_comp_id
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_deleted_atom.auth_comp_id'
_item.category_id 'deleted_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
CYS
;
stop_
_item_type.code 'code'
save_
save__deleted_atom.auth_atom_id
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_deleted_atom.auth_atom_id'
_item.category_id 'deleted_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
HG
;
stop_
_item_type.code 'code'
save_
save__deleted_atom.atom_type
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_deleted_atom.atom_type'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
H
;
stop_
_item_type.code 'code'
save_
save__deleted_atom.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_deleted_atom.entry_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__deleted_atom.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_deleted_atom.assembly_id'
_item.category_id 'deleted_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_bio_function
_category.description
;
Items in the assembly_bio_function category describe the biological functions carried out by a molecular assembly.
;
_category.id 'assembly_bio_function'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_bio_function.biological_function'
'_assembly_bio_function.entry_id'
'_assembly_bio_function.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_bio_function.biological_function
_item_description.description
;
Very brief description of the biological function of the entity assembly.
;
_item.name '_assembly_bio_function.biological_function'
_item.category_id 'assembly_bio_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_bio_function.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_bio_function.entry_id'
_item.category_id 'assembly_bio_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_bio_function.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_bio_function.assembly_id'
_item.category_id 'assembly_bio_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_angle
_category.description
;
Items in the angle category define a unique identifier for each angle described by three linked atoms in the molecular assembly.
;
_category.id 'angle'
_category.mandatory_code yes
loop_
_category_key.name
'_angle.id'
'_angle.entry_id'
'_angle.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__angle.id
_item_description.description
;
Unique identifier for the angle that is valid across the full molecular
assembly.
;
_item.name '_angle.id'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.angle_name
_item_description.description
;
Name for the angle defined as a community recognized standard.
;
_item.name '_angle.angle_name'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__angle.assembly_atom_id_1
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_angle.assembly_atom_id_1'
_item.category_id 'angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_assembly_id_1
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_angle.entity_assembly_id_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_id_1
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_angle.entity_id_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_label_1
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_angle.entity_label_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__angle.comp_id_1
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_angle.comp_id_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.comp_label_1
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_angle.comp_label_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__angle.comp_index_id_1
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_angle.comp_index_id_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.seq_id_1
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_angle.seq_id_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_angle.atom_id_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__angle.atom_type_1
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_angle.atom_type_1'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.assembly_atom_id_2
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_angle.assembly_atom_id_2'
_item.category_id 'angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_assembly_id_2
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_angle.entity_assembly_id_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_id_2
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_angle.entity_id_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_label_2
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_angle.entity_label_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__angle.comp_id_2
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_angle.comp_id_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.comp_label_2
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_angle.comp_label_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__angle.comp_index_id_2
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_angle.comp_index_id_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.seq_id_2
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_angle.seq_id_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_angle.atom_id_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__angle.atom_type_2
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_angle.atom_type_2'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.assembly_atom_id_3
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_angle.assembly_atom_id_3'
_item.category_id 'angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_assembly_id_3
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_angle.entity_assembly_id_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_id_3
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_angle.entity_id_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.entity_label_3
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_angle.entity_label_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__angle.comp_id_3
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_angle.comp_id_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.comp_label_3
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_angle.comp_label_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__angle.comp_index_id_3
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_angle.comp_index_id_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.seq_id_3
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_angle.seq_id_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__angle.atom_id_3
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_angle.atom_id_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__angle.atom_type_3
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_angle.atom_type_3'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_angle.entry_id'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__angle.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_angle.assembly_id'
_item.category_id 'angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_torsion_angle
_category.description
;
Items in the torsion_angle category define a unique identifier for each torsion angle in the molecular assembly.
;
_category.id 'torsion_angle'
_category.mandatory_code yes
loop_
_category_key.name
'_torsion_angle.id'
'_torsion_angle.entry_id'
'_torsion_angle.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__torsion_angle.id
_item_description.description
;
Unique identifier for the torsion angle that is valid across the full molecular
assembly.
;
_item.name '_torsion_angle.id'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.torsion_angle_name
_item_description.description
;
Name for the torsion angle commonly used in the scientific literature or
defined by a recognized organization for standard scientific nomenclature.
;
_item.name '_torsion_angle.torsion_angle_name'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__torsion_angle.assembly_atom_id_1
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_torsion_angle.assembly_atom_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_assembly_id_1
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_torsion_angle.entity_assembly_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_id_1
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_torsion_angle.entity_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_label_1
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_torsion_angle.entity_label_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_id_1
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_torsion_angle.comp_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.comp_label_1
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_torsion_angle.comp_label_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_index_id_1
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_torsion_angle.comp_index_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.seq_id_1
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_torsion_angle.seq_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_torsion_angle.atom_id_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__torsion_angle.atom_type_1
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_torsion_angle.atom_type_1'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.assembly_atom_id_2
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_torsion_angle.assembly_atom_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_assembly_id_2
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_torsion_angle.entity_assembly_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_id_2
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_torsion_angle.entity_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_label_2
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_torsion_angle.entity_label_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_id_2
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_torsion_angle.comp_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.comp_label_2
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_torsion_angle.comp_label_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_index_id_2
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_torsion_angle.comp_index_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.seq_id_2
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_torsion_angle.seq_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_torsion_angle.atom_id_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__torsion_angle.atom_type_2
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_torsion_angle.atom_type_2'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.assembly_atom_id_3
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_torsion_angle.assembly_atom_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_assembly_id_3
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_torsion_angle.entity_assembly_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_id_3
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_torsion_angle.entity_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_label_3
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_torsion_angle.entity_label_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_id_3
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_torsion_angle.comp_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.comp_label_3
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_torsion_angle.comp_label_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_index_id_3
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_torsion_angle.comp_index_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.seq_id_3
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_torsion_angle.seq_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.atom_id_3
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_torsion_angle.atom_id_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__torsion_angle.atom_type_3
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_torsion_angle.atom_type_3'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.assembly_atom_id_4
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_torsion_angle.assembly_atom_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_assembly_id_4
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_torsion_angle.entity_assembly_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_id_4
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_torsion_angle.entity_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.entity_label_4
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_torsion_angle.entity_label_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_id_4
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_torsion_angle.comp_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.comp_label_4
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_torsion_angle.comp_label_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__torsion_angle.comp_index_id_4
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_torsion_angle.comp_index_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.seq_id_4
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_torsion_angle.seq_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__torsion_angle.atom_id_4
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_torsion_angle.atom_id_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__torsion_angle.atom_type_4
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_torsion_angle.atom_type_4'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_torsion_angle.entry_id'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__torsion_angle.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_torsion_angle.assembly_id'
_item.category_id 'torsion_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_segment
_category.description
;
Items in the assembly_segment category define at levels from atom to chemical component subsets of the assembly. The subsets may be but are not limited to contiguous atoms or components of the assembly. As an example, the active site of a molecular assembly could be defined as a segment.
;
_category.id 'assembly_segment'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_segment.id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_segment.id
_item_description.description
;
Integer value that uniquely defines the segment of the molecular assembly
described. This tag is not the primary key for this table.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_assembly_segment.id' 'assembly_segment' yes
'_assembly_segment_description.assembly_segment_id' 'assembly_segment_description' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_assembly_segment_description.assembly_segment_id' '_assembly_segment.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_assembly_segment.entity_assembly_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_assembly_segment.entity_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment.entity_label
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_assembly_segment.entity_label'
_item.category_id 'assembly_segment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__assembly_segment.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_assembly_segment.comp_index_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_assembly_segment.comp_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_segment.comp_label
_item_description.description
;
Pointer to a saveframe of the category 'chem_comp'
;
_item.name '_assembly_segment.comp_label'
_item.category_id 'assembly_segment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__assembly_segment.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_assembly_segment.seq_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_assembly_segment.atom_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__assembly_segment.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_assembly_segment.assembly_atom_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_segment.entry_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_segment.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_segment.assembly_id'
_item.category_id 'assembly_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_segment_description
_category.description
;
Items in the assembly_segment_description category provide a description of an assembly segment.
;
_category.id 'assembly_segment_description'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_segment_description.entry_id'
'_assembly_segment_description.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_segment_description.assembly_segment_id
_item_description.description
;
Pointer to '_Assembly_segment.ID'
;
_item.name '_assembly_segment_description.assembly_segment_id'
_item.category_id 'assembly_segment_description'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_segment_description.code
_item_description.description
;
Code that defines the type of assembly segment.
;
_item.name '_assembly_segment_description.code'
_item.category_id 'assembly_segment_description'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_segment_description.details
_item_description.description
;
Text providing additional information about the assembly segment.
;
_item.name '_assembly_segment_description.details'
_item.category_id 'assembly_segment_description'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assembly_segment_description.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_segment_description.entry_id'
_item.category_id 'assembly_segment_description'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_segment_description.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_segment_description.assembly_id'
_item.category_id 'assembly_segment_description'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_keyword
_category.description
;
Items in the assembly_keyword category provide keywords describing the molecular system.
;
_category.id 'assembly_keyword'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_keyword.keyword'
'_assembly_keyword.entry_id'
'_assembly_keyword.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_keyword.keyword
_item_description.description
;
A word or very brief phrase that provide a concise description of the entity
assembly.
;
_item.name '_assembly_keyword.keyword'
_item.category_id 'assembly_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_keyword.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_keyword.entry_id'
_item.category_id 'assembly_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_keyword.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_keyword.assembly_id'
_item.category_id 'assembly_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_citation
_category.description
;
Items in the assembly_citation category provide a pointer to a citation where the molecular assembly is described.
;
_category.id 'assembly_citation'
_category.mandatory_code yes
loop_
_category_key.name
'_assembly_citation.citation_id'
'_assembly_citation.entry_id'
'_assembly_citation.assembly_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_assembly_citation.citation_id'
_item.category_id 'assembly_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_assembly_citation.citation_label'
_item.category_id 'assembly_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__assembly_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_citation.entry_id'
_item.category_id 'assembly_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_citation.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_assembly_citation.assembly_id'
_item.category_id 'assembly_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_annotation_list
_category.description
;
category description not available
;
_category.id 'assembly_annotation_list'
loop_
_category_key.name
'_assembly_annotation_list.entry_id'
'_assembly_annotation_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_annotation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_annotation_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_assembly_annotation_list.sf_category'
_item.category_id 'assembly_annotation_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_annotation_list.sf_framecode
_item_description.description
;
The framecode for the save frame where author defined annotations for the
molecular assembly studied are provided.
;
_item.name '_assembly_annotation_list.sf_framecode'
_item.category_id 'assembly_annotation_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_annotation_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_annotation_list.entry_id'
_item.category_id 'assembly_annotation_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_annotation_list.id
_item_description.description
;
An integer value that uniquely defines the assembly annotation saveframe
from other assembly annotation saveframes in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_assembly_annotation_list.id' 'assembly_annotation_list' yes
'_author_annotation.assembly_annotation_list_id' 'author_annotation' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_author_annotation.assembly_annotation_list_id' '_assembly_annotation_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_annotation_list.source
_item_description.description
;
Code defining the source of the annotation provided.
;
_item.name '_assembly_annotation_list.source'
_item.category_id 'assembly_annotation_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_annotation_list.details
_item_description.description
;
Text providing additional information regarding the annotation provided
for the assembly and/or its subsystems.
;
_item.name '_assembly_annotation_list.details'
_item.category_id 'assembly_annotation_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_author_annotation
_category.description
;
category description not available
;
_category.id 'author_annotation'
loop_
_category_key.name
'_author_annotation.id'
'_author_annotation.entry_id'
'_author_annotation.assembly_annotation_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_annotation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__author_annotation.id
_item_description.description
;
An integer value that uniquely identifies the author provided annotation.
;
_item.name '_author_annotation.id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_author_annotation.assembly_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_author_annotation.assembly_subsystem_id'
_item.category_id 'author_annotation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_author_annotation.entity_assembly_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_author_annotation.entity_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_author_annotation.comp_index_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.comp_index_id_start
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_author_annotation.comp_index_id_start'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.comp_index_id_end
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_author_annotation.comp_index_id_end'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_author_annotation.seq_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.seq_id_start
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_author_annotation.seq_id_start'
_item.category_id 'author_annotation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.seq_id_end
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_author_annotation.seq_id_end'
_item.category_id 'author_annotation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_author_annotation.comp_id'
_item.category_id 'author_annotation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__author_annotation.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_author_annotation.atom_id'
_item.category_id 'author_annotation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__author_annotation.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_author_annotation.assembly_atom_id'
_item.category_id 'author_annotation'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__author_annotation.annotation_code
_item_description.description
;
A code that describes the kind of annotation provided.
;
_item.name '_author_annotation.annotation_code'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__author_annotation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_author_annotation.entry_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__author_annotation.assembly_annotation_list_id
_item_description.description
;
Pointer to '_Assembly_annotation_list.ID'
;
_item.name '_author_annotation.assembly_annotation_list_id'
_item.category_id 'author_annotation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assembly_subsystem
_category.description
;
category description not available
;
_category.id 'assembly_subsystem'
loop_
_category_key.name
'_assembly_subsystem.entry_id'
'_assembly_subsystem.id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assembly_subsystem.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_assembly_subsystem.sf_category'
_item.category_id 'assembly_subsystem'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_subsystem.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this molecular subsystem from
all other subsystems of the molecular assembly studied.
;
_item.name '_assembly_subsystem.sf_framecode'
_item.category_id 'assembly_subsystem'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_subsystem.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assembly_subsystem.entry_id'
_item.category_id 'assembly_subsystem'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assembly_subsystem.id
_item_description.description
;
An integer value that uniquely defines the subsystem of the molecular assembly
described. An assembly subsystem contains a subset of the components of
the full molecular assembly, but does not consist of fragments of the molecular
assembly components.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_assembly_subsystem.id' 'assembly_subsystem' yes
'_author_annotation.assembly_subsystem_id' 'author_annotation' yes
'_subsystem_common_name.assembly_subsystem_id' 'subsystem_common_name' yes
'_subsystem_type.assembly_subsystem_id' 'subsystem_type' yes
'_subsystem_component.assembly_subsystem_id' 'subsystem_component' yes
'_subsystem_keyword.assembly_subsystem_id' 'subsystem_keyword' yes
'_subsystem_biological_function.assembly_subsystem_id' 'subsystem_biological_function' yes
'_subsystem_db_link.assembly_subsystem_id' 'subsystem_db_link' yes
'_subsystem_citation.assembly_subsystem_list_id' 'subsystem_citation' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_author_annotation.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_common_name.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_type.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_component.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_keyword.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_biological_function.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_db_link.assembly_subsystem_id' '_assembly_subsystem.id'
'_subsystem_citation.assembly_subsystem_list_id' '_assembly_subsystem.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assembly_subsystem.name
_item_description.description
;
Author supplied name for the assembly subsystem.
;
_item.name '_assembly_subsystem.name'
_item.category_id 'assembly_subsystem'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_subsystem.cas_name
_item_description.description
;
Chemical Abstract Services name that applies to the assembly subsystem.
;
_item.name '_assembly_subsystem.cas_name'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_subsystem.cas_registry_number
_item_description.description
;
Chemical Abstract Services registry number that applies to the assembly
subsystem.
;
_item.name '_assembly_subsystem.cas_registry_number'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assembly_subsystem.enzyme_commission_number
_item_description.description
;
Identification number defined by the Enzyme Commission for the protein
molecular system, or biological molecular system described in the saveframe.
;
_item.name '_assembly_subsystem.enzyme_commission_number'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
3.1.3.5.3
;
stop_
_item_type.code 'line'
save_
save__assembly_subsystem.molecular_mass
_item_description.description
;
The approximate mass of the system as defined by the authors and is intended
to approximate the sum of the masses of all of the atoms in the system. No
attempt is made to define the mass at a specific pH value, in terms of the protonation
state of any pH titratable groups, or according to the incorporation
of isotopes.
;
_item.name '_assembly_subsystem.molecular_mass'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
24000
;
stop_
_item_type.code 'float'
save_
save__assembly_subsystem.details
_item_description.description
;
Additional information relevant to the data in the current saveframe or
to a specific data item is entered as a value to this tag. The information entered
must supplement information already present. Whenever possible data should
associated with specific data tags and not included in the value to a '_Details' tag.
;
_item.name '_assembly_subsystem.details'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assembly_subsystem.db_query_date
_item_description.description
;
Date that the last query has been conducted to locate entries in external
databases that are related to the assembly subsystem.
;
_item.name '_assembly_subsystem.db_query_date'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__assembly_subsystem.db_last_query_revised_last_date
_item_description.description
;
Date that this table was updated with links to external databases.
;
_item.name '_assembly_subsystem.db_last_query_revised_last_date'
_item.category_id 'assembly_subsystem'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save_subsystem_common_name
_category.description
;
category description not available
;
_category.id 'subsystem_common_name'
loop_
_category_key.name
'_subsystem_common_name.name'
'_subsystem_common_name.entry_id'
'_subsystem_common_name.assembly_subsystem_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_common_name.name
_item_description.description
;
A name commonly used in the literature to refer to this assembly subsystem.
;
_item.name '_subsystem_common_name.name'
_item.category_id 'subsystem_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_common_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_common_name.entry_id'
_item.category_id 'subsystem_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_common_name.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_common_name.assembly_subsystem_id'
_item.category_id 'subsystem_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_subsystem_type
_category.description
;
category description not available
;
_category.id 'subsystem_type'
loop_
_category_key.name
'_subsystem_type.type'
'_subsystem_type.entry_id'
'_subsystem_type.assembly_subsystem_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_type.type
_item_description.description
;
A code that defines the general type or kind of assembly subsystem.
;
_item.name '_subsystem_type.type'
_item.category_id 'subsystem_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_type.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_type.entry_id'
_item.category_id 'subsystem_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_type.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_type.assembly_subsystem_id'
_item.category_id 'subsystem_type'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_subsystem_component
_category.description
;
category description not available
;
_category.id 'subsystem_component'
loop_
_category_key.name
'_subsystem_component.entity_assembly_id'
'_subsystem_component.entry_id'
'_subsystem_component.assembly_subsystem_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_component.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_subsystem_component.entity_assembly_id'
_item.category_id 'subsystem_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__subsystem_component.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_subsystem_component.entity_id'
_item.category_id 'subsystem_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__subsystem_component.entity_label
_item_description.description
;
Pointer to a saveframe of the category entity.
;
_item.name '_subsystem_component.entity_label'
_item.category_id 'subsystem_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__subsystem_component.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_component.entry_id'
_item.category_id 'subsystem_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_component.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_component.assembly_subsystem_id'
_item.category_id 'subsystem_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_subsystem_keyword
_category.description
;
category description not available
;
_category.id 'subsystem_keyword'
loop_
_category_key.name
'_subsystem_keyword.keyword'
'_subsystem_keyword.entry_id'
'_subsystem_keyword.assembly_subsystem_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_keyword.keyword
_item_description.description
;
A keyword that describes the assembly subsystem.
;
_item.name '_subsystem_keyword.keyword'
_item.category_id 'subsystem_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_keyword.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_keyword.entry_id'
_item.category_id 'subsystem_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_keyword.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_keyword.assembly_subsystem_id'
_item.category_id 'subsystem_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_subsystem_biological_function
_category.description
;
category description not available
;
_category.id 'subsystem_biological_function'
loop_
_category_key.name
'_subsystem_biological_function.biological_function'
'_subsystem_biological_function.entry_id'
'_subsystem_biological_function.assembly_subsystem_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_biological_function.biological_function
_item_description.description
;
A word or very brief phrase that defines a biological function that the
assembly subsystem carries out.
;
_item.name '_subsystem_biological_function.biological_function'
_item.category_id 'subsystem_biological_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__subsystem_biological_function.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_biological_function.entry_id'
_item.category_id 'subsystem_biological_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_biological_function.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_biological_function.assembly_subsystem_id'
_item.category_id 'subsystem_biological_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_subsystem_db_link
_category.description
;
category description not available
;
_category.id 'subsystem_db_link'
loop_
_category_key.name
'_subsystem_db_link.database_code'
'_subsystem_db_link.accession_code'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_db_link.author_supplied
_item_description.description
;
Boolean code that defines if the link to a database was provided by the
author (yes) or from another source (no).
;
_item.name '_subsystem_db_link.author_supplied'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yes_no'
save_
save__subsystem_db_link.database_code
_item_description.description
;
Abbreviation for the database
;
_item.name '_subsystem_db_link.database_code'
_item.category_id 'subsystem_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_db_link.accession_code
_item_description.description
;
Accession code for the entry in the database.
;
_item.name '_subsystem_db_link.accession_code'
_item.category_id 'subsystem_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_db_link.entry_mol_code
_item_description.description
;
Code assigned by the database to the molecule in the database entry.
;
_item.name '_subsystem_db_link.entry_mol_code'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_db_link.entry_mol_name
_item_description.description
;
Name of the molecular assembly in the database entry.
;
_item.name '_subsystem_db_link.entry_mol_name'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_db_link.entry_experimental_method
_item_description.description
;
Experimental method used to generate the data in the database entry.
;
_item.name '_subsystem_db_link.entry_experimental_method'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_db_link.entry_relation_type
_item_description.description
;
Relationship between the database entry and this BMRB entry.
;
_item.name '_subsystem_db_link.entry_relation_type'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__subsystem_db_link.entry_details
_item_description.description
;
Any text information relevant to the database entry.
;
_item.name '_subsystem_db_link.entry_details'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__subsystem_db_link.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_db_link.entry_id'
_item.category_id 'subsystem_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_db_link.assembly_subsystem_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_db_link.assembly_subsystem_id'
_item.category_id 'subsystem_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_subsystem_citation
_category.description
;
category description not available
;
_category.id 'subsystem_citation'
loop_
_category_key.name
'_subsystem_citation.citation_id'
'_subsystem_citation.entry_id'
'_subsystem_citation.assembly_subsystem_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assembly_subsystems'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__subsystem_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_subsystem_citation.citation_id'
_item.category_id 'subsystem_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__subsystem_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_subsystem_citation.citation_label'
_item.category_id 'subsystem_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__subsystem_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_subsystem_citation.entry_id'
_item.category_id 'subsystem_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__subsystem_citation.assembly_subsystem_list_id
_item_description.description
;
Pointer to '_Assembly_subsystem.ID'
;
_item.name '_subsystem_citation.assembly_subsystem_list_id'
_item.category_id 'subsystem_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity
_category.description
;
Items in the entity category describe the characteristics of a molecular entity (protein, nucleic acid, polycarbohydrate, cofactor, ligand, inhibitor, etc.)
;
_category.id 'entity'
_category.mandatory_code yes
loop_
_category_key.name
'_entity.entry_id'
'_entity.id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_entity.sf_category'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this entity from all other
chemically unique entities in the molecular assembly studied.
;
_item.name '_entity.sf_framecode'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
HIV protease polypeptide
;
stop_
_item_type.code 'code'
save_
save__entity.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity.entry_id'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity.id
_item_description.description
;
An integer value that is the unique identifier for the entity within the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity.id' 'entity' yes
'_entry_prerelease_seq.entity_id' 'entry_prerelease_seq' yes
'_entity_assembly.entity_id' 'entity_assembly' yes
'_struct_asym.entity_id' 'struct_asym' yes
'_chem_comp_assembly.entity_id' 'chem_comp_assembly' yes
'_pdbx_poly_seq_scheme.entity_id' 'pdbx_poly_seq_scheme' yes
'_pdbx_nonpoly_scheme.entity_id' 'pdbx_nonpoly_scheme' yes
'_atom.entity_id' 'atom' yes
'_bond.entity_id_1' 'bond' yes
'_bond.entity_id_2' 'bond' yes
'_deleted_atom.entity_id' 'deleted_atom' yes
'_angle.entity_id_1' 'angle' yes
'_angle.entity_id_2' 'angle' yes
'_angle.entity_id_3' 'angle' yes
'_torsion_angle.entity_id_1' 'torsion_angle' yes
'_torsion_angle.entity_id_2' 'torsion_angle' yes
'_torsion_angle.entity_id_3' 'torsion_angle' yes
'_torsion_angle.entity_id_4' 'torsion_angle' yes
'_assembly_segment.entity_id' 'assembly_segment' yes
'_author_annotation.entity_id' 'author_annotation' yes
'_subsystem_component.entity_id' 'subsystem_component' yes
'_entity.parent_entity_id' 'entity' yes
'_entity_db_link.entity_id' 'entity_db_link' yes
'_entity_biological_function.entity_id' 'entity_biological_function' yes
'_entity_common_name.entity_id' 'entity_common_name' yes
'_entity_systematic_name.entity_id' 'entity_systematic_name' yes
'_entity_keyword.entity_id' 'entity_keyword' yes
'_entity_comp_index.entity_id' 'entity_comp_index' yes
'_entity_poly_seq.entity_id' 'entity_poly_seq' yes
'_entity_chimera_segment.entity_id' 'entity_chimera_segment' yes
'_entity_comp_index_alt.entity_id' 'entity_comp_index_alt' yes
'_entity_bond.entity_id' 'entity_bond' yes
'_entity_citation.entity_id' 'entity_citation' yes
'_entity_natural_src.entity_id' 'entity_natural_src' yes
'_natural_source_db.entity_id' 'natural_source_db' yes
'_entity_experimental_src.entity_id' 'entity_experimental_src' yes
'_sample_component.entity_id' 'sample_component' yes
'_sample_component_atom_isotope.entity_id' 'sample_component_atom_isotope' yes
'_entity_purity.entity_id' 'entity_purity' yes
'_atom_chem_shift.entity_id' 'atom_chem_shift' yes
'_coupling_constant.entity_id_1' 'coupling_constant' yes
'_coupling_constant.entity_id_2' 'coupling_constant' yes
'_assigned_peak_chem_shift.entity_id' 'assigned_peak_chem_shift' yes
'_resonance_assignment.entity_id' 'resonance_assignment' yes
'_isotope_effect.entity_id' 'isotope_effect' yes
'_isotope_label_pattern.entity_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.entity_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.entity_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.entity_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.entity_id' 'theoretical_chem_shift' yes
'_rdc.entity_id_1' 'rdc' yes
'_rdc.entity_id_2' 'rdc' yes
'_dipolar_coupling.entity_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.entity_id_2' 'dipolar_coupling' yes
'_spectral_density.entity_id' 'spectral_density' yes
'_other_data.entity_id' 'other_data' yes
'_h_exch_rate.entity_id' 'h_exch_rate' yes
'_h_exch_protection_factor.entity_id' 'h_exch_protection_factor' yes
'_homonucl_noe.entity_id_1' 'homonucl_noe' yes
'_homonucl_noe.entity_id_2' 'homonucl_noe' yes
'_heteronucl_noe.entity_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.entity_id_2' 'heteronucl_noe' yes
'_t1.entity_id' 't1' yes
'_t1rho.entity_id' 't1rho' yes
'_t2.entity_id' 't2' yes
'_dipole_dipole_relax.entity_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.entity_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_entity_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_entity_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_entity_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_entity_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_entity_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_entity_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_entity_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_entity_id_2' 'cross_correlation_d_csa' yes
'_order_param.entity_id' 'order_param' yes
'_ph_titr_result.atom_observed_entity_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_entity_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.entity_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_exptl.entity_id' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_feature.entity_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.heavy_atom_entity_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_entity_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_entity_id' 'deduced_h_bond' yes
'_atom_site.label_entity_id' 'atom_site' yes
'_terminal_residue.entity_id' 'terminal_residue' yes
'_rep_conf.entity_id' 'rep_conf' yes
'_angular_order_param.entity_id' 'angular_order_param' yes
'_tertiary_struct.entity_id' 'tertiary_struct' yes
'_secondary_struct.entity_id' 'secondary_struct' yes
'_bond_annotation.entity_id_1' 'bond_annotation' yes
'_bond_annotation.entity_id_2' 'bond_annotation' yes
'_structure_interaction.entity_id_1' 'structure_interaction' yes
'_structure_interaction.entity_id_2' 'structure_interaction' yes
'_other_struct_feature.entity_id' 'other_struct_feature' yes
'_dist_constraint.entity_id' 'dist_constraint' yes
'_floating_chirality.entity_id_1' 'floating_chirality' yes
'_floating_chirality.entity_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.entity_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.entity_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.entity_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.entity_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.entity_id_1' 'rdc_constraint' yes
'_rdc_constraint.entity_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.entity_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.entity_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.entity_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.entity_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.entity_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.entity_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.entity_id' 'h_chem_shift_constraint' yes
'_other_constraint_list.entity_id' 'other_constraint_list' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_entry_prerelease_seq.entity_id' '_entity.id'
'_entity_assembly.entity_id' '_entity.id'
'_struct_asym.entity_id' '_entity.id'
'_chem_comp_assembly.entity_id' '_entity.id'
'_pdbx_poly_seq_scheme.entity_id' '_entity.id'
'_pdbx_nonpoly_scheme.entity_id' '_entity.id'
'_atom.entity_id' '_entity.id'
'_bond.entity_id_1' '_entity.id'
'_bond.entity_id_2' '_entity.id'
'_deleted_atom.entity_id' '_entity.id'
'_angle.entity_id_1' '_entity.id'
'_angle.entity_id_2' '_entity.id'
'_angle.entity_id_3' '_entity.id'
'_torsion_angle.entity_id_1' '_entity.id'
'_torsion_angle.entity_id_2' '_entity.id'
'_torsion_angle.entity_id_3' '_entity.id'
'_torsion_angle.entity_id_4' '_entity.id'
'_assembly_segment.entity_id' '_entity.id'
'_author_annotation.entity_id' '_entity.id'
'_subsystem_component.entity_id' '_entity.id'
'_entity.parent_entity_id' '_entity.id'
'_entity_db_link.entity_id' '_entity.id'
'_entity_biological_function.entity_id' '_entity.id'
'_entity_common_name.entity_id' '_entity.id'
'_entity_systematic_name.entity_id' '_entity.id'
'_entity_keyword.entity_id' '_entity.id'
'_entity_comp_index.entity_id' '_entity.id'
'_entity_poly_seq.entity_id' '_entity.id'
'_entity_chimera_segment.entity_id' '_entity.id'
'_entity_comp_index_alt.entity_id' '_entity.id'
'_entity_bond.entity_id' '_entity.id'
'_entity_citation.entity_id' '_entity.id'
'_entity_natural_src.entity_id' '_entity.id'
'_natural_source_db.entity_id' '_entity.id'
'_entity_experimental_src.entity_id' '_entity.id'
'_sample_component.entity_id' '_entity.id'
'_sample_component_atom_isotope.entity_id' '_entity.id'
'_entity_purity.entity_id' '_entity.id'
'_atom_chem_shift.entity_id' '_entity.id'
'_coupling_constant.entity_id_1' '_entity.id'
'_coupling_constant.entity_id_2' '_entity.id'
'_assigned_peak_chem_shift.entity_id' '_entity.id'
'_resonance_assignment.entity_id' '_entity.id'
'_isotope_effect.entity_id' '_entity.id'
'_isotope_label_pattern.entity_id' '_entity.id'
'_mol_interaction_chem_shift.entity_id' '_entity.id'
'_cs_anisotropy.entity_id' '_entity.id'
'_chem_shielding_tensor.entity_id' '_entity.id'
'_theoretical_chem_shift.entity_id' '_entity.id'
'_rdc.entity_id_1' '_entity.id'
'_rdc.entity_id_2' '_entity.id'
'_dipolar_coupling.entity_id_1' '_entity.id'
'_dipolar_coupling.entity_id_2' '_entity.id'
'_spectral_density.entity_id' '_entity.id'
'_other_data.entity_id' '_entity.id'
'_h_exch_rate.entity_id' '_entity.id'
'_h_exch_protection_factor.entity_id' '_entity.id'
'_homonucl_noe.entity_id_1' '_entity.id'
'_homonucl_noe.entity_id_2' '_entity.id'
'_heteronucl_noe.entity_id_1' '_entity.id'
'_heteronucl_noe.entity_id_2' '_entity.id'
'_t1.entity_id' '_entity.id'
'_t1rho.entity_id' '_entity.id'
'_t2.entity_id' '_entity.id'
'_dipole_dipole_relax.entity_id_1' '_entity.id'
'_dipole_dipole_relax.entity_id_2' '_entity.id'
'_cross_correlation_dd.dipole_1_entity_id_1' '_entity.id'
'_cross_correlation_dd.dipole_1_entity_id_2' '_entity.id'
'_cross_correlation_dd.dipole_2_entity_id_1' '_entity.id'
'_cross_correlation_dd.dipole_2_entity_id_2' '_entity.id'
'_cross_correlation_d_csa.dipole_entity_id_1' '_entity.id'
'_cross_correlation_d_csa.dipole_entity_id_2' '_entity.id'
'_cross_correlation_d_csa.csa_entity_id_1' '_entity.id'
'_cross_correlation_d_csa.csa_entity_id_2' '_entity.id'
'_order_param.entity_id' '_entity.id'
'_ph_titr_result.atom_observed_entity_id' '_entity.id'
'_ph_titr_result.atom_titrated_entity_id' '_entity.id'
'_d_h_fractionation_factor.entity_id' '_entity.id'
'_deduced_secd_struct_exptl.entity_id' '_entity.id'
'_deduced_secd_struct_feature.entity_id' '_entity.id'
'_deduced_h_bond.heavy_atom_entity_id_1' '_entity.id'
'_deduced_h_bond.heavy_atom_entity_id_2' '_entity.id'
'_deduced_h_bond.hydrogen_atom_entity_id' '_entity.id'
'_atom_site.label_entity_id' '_entity.id'
'_terminal_residue.entity_id' '_entity.id'
'_rep_conf.entity_id' '_entity.id'
'_angular_order_param.entity_id' '_entity.id'
'_tertiary_struct.entity_id' '_entity.id'
'_secondary_struct.entity_id' '_entity.id'
'_bond_annotation.entity_id_1' '_entity.id'
'_bond_annotation.entity_id_2' '_entity.id'
'_structure_interaction.entity_id_1' '_entity.id'
'_structure_interaction.entity_id_2' '_entity.id'
'_other_struct_feature.entity_id' '_entity.id'
'_dist_constraint.entity_id' '_entity.id'
'_floating_chirality.entity_id_1' '_entity.id'
'_floating_chirality.entity_id_2' '_entity.id'
'_torsion_angle_constraint.entity_id_1' '_entity.id'
'_torsion_angle_constraint.entity_id_2' '_entity.id'
'_torsion_angle_constraint.entity_id_3' '_entity.id'
'_torsion_angle_constraint.entity_id_4' '_entity.id'
'_rdc_constraint.entity_id_1' '_entity.id'
'_rdc_constraint.entity_id_2' '_entity.id'
'_j_three_bond_constraint.entity_id_1' '_entity.id'
'_j_three_bond_constraint.entity_id_2' '_entity.id'
'_j_three_bond_constraint.entity_id_3' '_entity.id'
'_j_three_bond_constraint.entity_id_4' '_entity.id'
'_ca_cb_constraint.entity_id_1' '_entity.id'
'_ca_cb_constraint.entity_id_2' '_entity.id'
'_ca_cb_constraint.entity_id_3' '_entity.id'
'_ca_cb_constraint.entity_id_4' '_entity.id'
'_ca_cb_constraint.entity_id_5' '_entity.id'
'_h_chem_shift_constraint.entity_id' '_entity.id'
'_other_constraint_list.entity_id' '_entity.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity.bmrb_code
_item_description.description
;
A code for the entity that uniquely identifies the entity within a library
of entities maintained at BMRB.
;
_item.name '_entity.bmrb_code'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity.name
_item_description.description
;
A brief name commonly used for the entity.
;
_item.name '_entity.name'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity.type
_item_description.description
;
Entities are of two types polymer or non-polymer.
;
_item.name '_entity.type'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
polymer ?
non-polymer ?
water ?
stop_
loop_
_item_examples.case
;
polymer
;
stop_
_item_default.value 'polymer'
_item_type.code 'line'
save_
save__entity.polymer_common_type
_item_description.description
;
A code that indicates the common type of polymer to which the entity belongs.
;
_item.name '_entity.polymer_common_type'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
protein ?
DNA ?
RNA ?
'DNA/RNA hybrid' ?
polysaccharide ?
stop_
loop_
_item_examples.case
;
protein
;
stop_
_item_type.code 'line'
save_
save__entity.polymer_type
_item_description.description
;
Entity polymer types include protein, DNA, RNA, DNA/RNA hybrids, and carbohydrates.
;
_item.name '_entity.polymer_type'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
polypeptide(L) ?
polydeoxyribonucleotide DNA
polyribonucleotide RNA
'DNA/RNA hybrid' ?
polypeptide(D) ?
polysaccharide(D) ?
polysaccharide(L) ?
stop_
loop_
_item_examples.case
;
polypeptide(L)
;
stop_
_item_type.code 'line'
save_
save__entity.polymer_type_details
_item_description.description
;
Additional information about the polymer type.
;
_item.name '_entity.polymer_type_details'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
The polypeptide contains two D-amino acids at positions 6 and 10
;
stop_
_item_type.code 'text'
save_
save__entity.polymer_strand_id
_item_description.description
;
The PDB strand/chain id(s) corresponding to this polymer entity.
;
_item.name '_entity.polymer_strand_id'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
A
;
stop_
_item_type.code 'code'
save_
save__entity.polymer_seq_one_letter_code_can
_item_description.description
;
The sequence of a polymer entity expressed using only the standard one-letter
code for chemical components.
;
_item.name '_entity.polymer_seq_one_letter_code_can'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity.polymer_seq_one_letter_code
_item_description.description
;
The sequence of a polymer entity expressed using the one-letter code for
standard residues and an X for non-standard residues.
;
_item.name '_entity.polymer_seq_one_letter_code'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
AFGCRESWQAKCLPHNMVIXSDF
;
stop_
_item_type.code 'text'
save_
save__entity.target_identifier
_item_description.description
;
?
;
_item.name '_entity.target_identifier'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
356560
;
stop_
_item_type.code 'line'
save_
save__entity.polymer_author_defined_seq
_item_description.description
;
The author may provide a numbering scheme for a biopolymer that is different
from that defined by the public databases. This scheme may contain non-sequential
numbering and the use of alphabetic characters.
;
_item.name '_entity.polymer_author_defined_seq'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
3$K
3a$S
5$A
;
stop_
_item_type.code 'text'
save_
save__entity.polymer_author_seq_details
_item_description.description
;
A text description of the sequence for this entity.
;
_item.name '_entity.polymer_author_seq_details'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
Residues 1-8 represent a non-native affinity tag
This is the cytoplasmic globular domain of a membrane protein
;
stop_
_item_type.code 'text'
save_
save__entity.ambiguous_conformational_states
_item_description.description
;
A boolean flag to indicate the presence of multiple conformational states
for the entity that have not been clearly defined.
;
_item.name '_entity.ambiguous_conformational_states'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
no
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity.ambiguous_chem_comp_sites
_item_description.description
;
A boolean flag that indicates the presence or absence of multiple conformational
states for specific chemical components of the entity.
;
_item.name '_entity.ambiguous_chem_comp_sites'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
no
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity.nstd_monomer
_item_description.description
;
A boolean flag that indicates the presence (N) or absence (Y) of non-standard
chemical components in the entity.
;
_item.name '_entity.nstd_monomer'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
yes ?
no ?
stop_
loop_
_item_examples.case
;
yes
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity.nstd_chirality
_item_description.description
;
A boolean flag that indicates the presence or absence of non-standard chiral
atoms in the entity.
;
_item.name '_entity.nstd_chirality'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
no
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity.nstd_linkage
_item_description.description
;
A flag indicating the presence or absence of non-standard linkages between
monomers in the biopolymer.
;
_item.name '_entity.nstd_linkage'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
no
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity.nonpolymer_comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_entity.nonpolymer_comp_id'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity.nonpolymer_comp_label
_item_description.description
;
Pointer to a saveframe of the category chem_comp.
;
_item.name '_entity.nonpolymer_comp_label'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__entity.number_of_monomers
_item_description.description
;
The number of chemical components that make up a polymer entity.
;
_item.name '_entity.number_of_monomers'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
156
;
stop_
_item_type.code 'int'
save_
save__entity.number_of_nonpolymer_components
_item_description.description
;
Non-polymer compounds like ATP or NAD may be comprised of more than one
chemical component. If you want to describe each of the components in the non-polymer
enter the number of components that exist in the non-polymer entity.
;
_item.name '_entity.number_of_nonpolymer_components'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
4
;
stop_
_item_default.value '1'
_item_type.code 'int'
save_
save__entity.paramagnetic
_item_description.description
;
A boolean flag that indicates the paramagnetic state of the entity.
;
_item.name '_entity.paramagnetic'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__entity.thiol_state
_item_description.description
;
A keyword that describes the state of the thiol groups in the entity.
;
_item.name '_entity.thiol_state'
_item.category_id 'entity'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'all disulfide bound' ?
'all other bound' ?
'all free' ?
'not present' ?
'not available' ?
'free and bound' ?
unknown ?
'not reported' ?
'free and disulfide bound' ?
'free and other bound' ?
'free disulfide and other bound' ?
'disulfide and other bound' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity.src_method
_item_description.description
;
The method by which the sample for the entity was produced. Entities isolated
directly from natural sources (tissues, soil samples, etc.) are expected
to have further information in the entity natural source category. Entities isolated
from genetically manipulated sources are expected to have further information
in the entity experimental source category.
;
_item.name '_entity.src_method'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity.parent_entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity.parent_entity_id'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity.fragment
_item_description.description
;
Entity fragment description(s).
;
_item.name '_entity.fragment'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
replicase operator hairpin
;
stop_
_item_type.code 'text'
save_
save__entity.mutation
_item_description.description
;
Details about any entity mutation(s).
;
_item.name '_entity.mutation'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
C280S
;
stop_
_item_type.code 'text'
save_
save__entity.ec_number
_item_description.description
;
?
;
_item.name '_entity.ec_number'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity.calc_isoelectric_point
_item_description.description
;
The theoretical isoelectric point for the entity.
;
_item.name '_entity.calc_isoelectric_point'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity.formula_weight
_item_description.description
;
Formula mass in daltons of the entity.
;
_item.name '_entity.formula_weight'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity.formula_weight_exptl
_item_description.description
;
Experimentally determined formula weight for the molecular entity.
;
_item.name '_entity.formula_weight_exptl'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity.formula_weight_exptl_meth
_item_description.description
;
Method used to experimentally determine the formula weight for the molecular
entity.
;
_item.name '_entity.formula_weight_exptl_meth'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity.details
_item_description.description
;
Text providing additional details regarding this entity.
;
_item.name '_entity.details'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity.db_query_date
_item_description.description
;
Last date that a query was conducted to locate entries in databases that
are related to this molecular entity.
;
_item.name '_entity.db_query_date'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__entity.db_query_revised_last_date
_item_description.description
;
Last date that the table of related database entries was last updated.
;
_item.name '_entity.db_query_revised_last_date'
_item.category_id 'entity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save_entity_db_link
_category.description
;
Items in the entity_db_link provide the names of databases and accession numbers for entries in the databases that are related to a molecular entity and information about the link entry.
;
_category.id 'entity_db_link'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_db_link.database_code'
'_entity_db_link.accession_code'
'_entity_db_link.entry_id'
'_entity_db_link.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_db_link.author_supplied
_item_description.description
;
A code indicating that the link to a related database was provided by an
author (yes) or obtained through another method (no).
;
_item.name '_entity_db_link.author_supplied'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__entity_db_link.database_code
_item_description.description
;
Code assigned to a database.
;
_item.name '_entity_db_link.database_code'
_item.category_id 'entity_db_link'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
PDB 'Protein Data Bank'
BMRB 'BioMagResBank'
SWISS-PROT ?
GenBank ?
PIR ?
DBJ 'Data Bank of Japan'
EMBL ?
GI ?
PRF ?
REF ?
stop_
loop_
_item_examples.case
;
SWS
;
stop_
_item_type.code 'line'
save_
save__entity_db_link.accession_code
_item_description.description
;
Accession code for the entry in the database.
;
_item.name '_entity_db_link.accession_code'
_item.category_id 'entity_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
P09020
;
stop_
_item_type.code 'line'
save_
save__entity_db_link.entry_mol_code
_item_description.description
;
Code assigned by the database to the molecule in the database entry.
;
_item.name '_entity_db_link.entry_mol_code'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_db_link.entry_mol_name
_item_description.description
;
Name of the molecular entity in the database entry.
;
_item.name '_entity_db_link.entry_mol_name'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
Cyt c
;
stop_
_item_type.code 'line'
save_
save__entity_db_link.entry_experimental_method
_item_description.description
;
For structural databases$ the method used to determine the structure.
;
_item.name '_entity_db_link.entry_experimental_method'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'solution NMR' ?
'solid-state NMR' ?
'X-ray crystallography' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_db_link.entry_structure_resolution
_item_description.description
;
A value taken from the database that is a measure of the quality of the
structure.
;
_item.name '_entity_db_link.entry_structure_resolution'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity_db_link.entry_relation_type
_item_description.description
;
A brief description of how the database entry is related to the molecular
entity.
;
_item.name '_entity_db_link.entry_relation_type'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_db_link.entry_details
_item_description.description
;
Text providing additional information about the matching entry.
;
_item.name '_entity_db_link.entry_details'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_db_link.chimera_segment
_item_description.description
;
Code indicating if the listed database link is specific to the fragment
of the entity described by the tag '_Entity.Fragment'.
;
_item.name '_entity_db_link.chimera_segment'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_db_link.seq_query_to_submitted_percent
_item_description.description
;
In percent, the ratio of the length of retrieve sequence to the length
of the sequence of the molecular entity. This value can be used to determine if
the retrieved sequence is a subset or superset of the molecular entity.
;
_item.name '_entity_db_link.seq_query_to_submitted_percent'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity_db_link.seq_subject_length
_item_description.description
;
Length of the polymer sequence retrieve from the database.
;
_item.name '_entity_db_link.seq_subject_length'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_db_link.seq_identity
_item_description.description
;
Number of residues in the retrieved sequence that have identical positions
in the molecular entity determined by a homology alignment method.
;
_item.name '_entity_db_link.seq_identity'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity_db_link.seq_positive
_item_description.description
;
Number of residues in the retrieved sequence where the corresponding residue
in the molecular entity sequence has similar physical characteristics (hydrophobicity,
charge, etc.)
;
_item.name '_entity_db_link.seq_positive'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity_db_link.seq_homology_expectation_val
_item_description.description
;
The BLAST expectation value for the homology between the retrieved polymer
and the molecular entity.
;
_item.name '_entity_db_link.seq_homology_expectation_val'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity_db_link.seq_align_begin
_item_description.description
;
?
;
_item.name '_entity_db_link.seq_align_begin'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
10
;
stop_
_item_type.code 'code'
save_
save__entity_db_link.seq_align_end
_item_description.description
;
?
;
_item.name '_entity_db_link.seq_align_end'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
95
;
stop_
_item_type.code 'code'
save_
save__entity_db_link.seq_difference_details
_item_description.description
;
Text describing the differences in the sequences for the matched polymers.
;
_item.name '_entity_db_link.seq_difference_details'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_db_link.seq_alignment_details
_item_description.description
;
Text describing the alignment between the matched polymer sequences.
;
_item.name '_entity_db_link.seq_alignment_details'
_item.category_id 'entity_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_db_link.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_db_link.entry_id'
_item.category_id 'entity_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_db_link.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_db_link.entity_id'
_item.category_id 'entity_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_biological_function
_category.description
;
Items in the entity_biological_function category describe the biological function of the molecular entity.
;
_category.id 'entity_biological_function'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_biological_function.biological_function'
'_entity_biological_function.entry_id'
'_entity_biological_function.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_biological_function.biological_function
_item_description.description
;
A specific function carried out by the molecular entity in its native biological
system.
;
_item.name '_entity_biological_function.biological_function'
_item.category_id 'entity_biological_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
electron transport; protease; kinase
;
stop_
_item_type.code 'line'
save_
save__entity_biological_function.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_biological_function.entry_id'
_item.category_id 'entity_biological_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_biological_function.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_biological_function.entity_id'
_item.category_id 'entity_biological_function'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_common_name
_category.description
;
Items in the entity_common_name category provide a list of common names for the molecular entity.
;
_category.id 'entity_common_name'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_common_name.name'
'_entity_common_name.entry_id'
'_entity_common_name.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_common_name.name
_item_description.description
;
A name commonly used in the literature to refer to this biopolymer. This
may be a full name or an abbreviation.
;
_item.name '_entity_common_name.name'
_item.category_id 'entity_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
Rnase
;
stop_
_item_type.code 'line'
save_
save__entity_common_name.type
_item_description.description
;
A code defining the type of the common name provided.
;
_item.name '_entity_common_name.type'
_item.category_id 'entity_common_name'
_item.mandatory_code no
loop_
_item_examples.case
;
abbreviation
;
stop_
_item_type.code 'line'
save_
save__entity_common_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_common_name.entry_id'
_item.category_id 'entity_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_common_name.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_common_name.entity_id'
_item.category_id 'entity_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_systematic_name
_category.description
;
Items in the entity_systematic_name category provide a list of systematic names for a molecular entity and the systematic naming system.
;
_category.id 'entity_systematic_name'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_systematic_name.naming_system'
'_entity_systematic_name.entry_id'
'_entity_systematic_name.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_systematic_name.name
_item_description.description
;
A name for the biopolymer that has been defined by an official body or
is derived from rules defined by an official organization recognized by the scientific
community.
;
_item.name '_entity_systematic_name.name'
_item.category_id 'entity_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_systematic_name.naming_system
_item_description.description
;
An official method of nomenclature or defined set of nomenclature for biopolymers
recognized by the scientific community.
;
_item.name '_entity_systematic_name.naming_system'
_item.category_id 'entity_systematic_name'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
IUPAC ?
'CAS name' ?
'CAS registry number' ?
BMRB ?
'Three letter code' ?
stop_
loop_
_item_examples.case
;
Enzyme Commission
;
stop_
_item_type.code 'line'
save_
save__entity_systematic_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_systematic_name.entry_id'
_item.category_id 'entity_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_systematic_name.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_systematic_name.entity_id'
_item.category_id 'entity_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_keyword
_category.description
;
Items in the entity_keyword category provide a list of keywords that describe a molecular entity.
;
_category.id 'entity_keyword'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_keyword.keyword'
'_entity_keyword.entry_id'
'_entity_keyword.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_keyword.keyword
_item_description.description
;
A single word or very brief phrase that characterizes the molecular entity.
;
_item.name '_entity_keyword.keyword'
_item.category_id 'entity_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_keyword.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_keyword.entry_id'
_item.category_id 'entity_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_keyword.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_keyword.entity_id'
_item.category_id 'entity_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_comp_index
_category.description
;
Items in the entity_comp_index category provide a consistent numbering system for the moieties (amino acid residues, nucleotides, monosaccharides, or other chemical components) that are linked together through chemical bonds to form either a polymer or a non-polymer entity.
;
_category.id 'entity_comp_index'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_comp_index.id'
'_entity_comp_index.entry_id'
'_entity_comp_index.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_comp_index.id
_item_description.description
;
Unique ID for the compound in the entity
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_comp_index.id' 'entity_comp_index' yes
'_chem_comp_assembly.comp_index_id' 'chem_comp_assembly' yes
'_pdbx_poly_seq_scheme.comp_index_id' 'pdbx_poly_seq_scheme' yes
'_pdbx_nonpoly_scheme.comp_index_id' 'pdbx_nonpoly_scheme' yes
'_atom.comp_index_id' 'atom' yes
'_bond.comp_index_id_1' 'bond' yes
'_bond.comp_index_id_2' 'bond' yes
'_deleted_atom.comp_index_id' 'deleted_atom' yes
'_angle.comp_index_id_1' 'angle' yes
'_angle.comp_index_id_2' 'angle' yes
'_angle.comp_index_id_3' 'angle' yes
'_torsion_angle.comp_index_id_1' 'torsion_angle' yes
'_torsion_angle.comp_index_id_2' 'torsion_angle' yes
'_torsion_angle.comp_index_id_3' 'torsion_angle' yes
'_torsion_angle.comp_index_id_4' 'torsion_angle' yes
'_assembly_segment.comp_index_id' 'assembly_segment' yes
'_author_annotation.comp_index_id' 'author_annotation' yes
'_author_annotation.comp_index_id_start' 'author_annotation' yes
'_author_annotation.comp_index_id_end' 'author_annotation' yes
'_entity_poly_seq.comp_index_id' 'entity_poly_seq' yes
'_entity_chimera_segment.comp_index_id_begin' 'entity_chimera_segment' yes
'_entity_chimera_segment.comp_index_id_end' 'entity_chimera_segment' yes
'_entity_comp_index_alt.entity_comp_index_id' 'entity_comp_index_alt' yes
'_entity_bond.comp_index_id_1' 'entity_bond' yes
'_entity_bond.comp_index_id_2' 'entity_bond' yes
'_sample_component_atom_isotope.comp_index_id' 'sample_component_atom_isotope' yes
'_atom_chem_shift.comp_index_id' 'atom_chem_shift' yes
'_coupling_constant.comp_index_id_1' 'coupling_constant' yes
'_coupling_constant.comp_index_id_2' 'coupling_constant' yes
'_assigned_peak_chem_shift.comp_index_id' 'assigned_peak_chem_shift' yes
'_resonance_assignment.comp_index_id' 'resonance_assignment' yes
'_spin_system.comp_index_id' 'spin_system' yes
'_isotope_effect.comp_index_id' 'isotope_effect' yes
'_isotope_label_pattern.comp_index_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.comp_index_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.comp_index_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.comp_index_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.comp_index_id' 'theoretical_chem_shift' yes
'_rdc.comp_index_id_1' 'rdc' yes
'_rdc.comp_index_id_2' 'rdc' yes
'_dipolar_coupling.comp_index_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.comp_index_id_2' 'dipolar_coupling' yes
'_spectral_density.comp_index_id' 'spectral_density' yes
'_other_data.comp_index_id' 'other_data' yes
'_h_exch_rate.comp_index_id' 'h_exch_rate' yes
'_h_exch_protection_factor.comp_index_id' 'h_exch_protection_factor' yes
'_homonucl_noe.comp_index_id_1' 'homonucl_noe' yes
'_homonucl_noe.comp_index_id_2' 'homonucl_noe' yes
'_heteronucl_noe.comp_index_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.comp_index_id_2' 'heteronucl_noe' yes
'_t1.comp_index_id' 't1' yes
'_t1rho.comp_index_id' 't1rho' yes
'_t2.comp_index_id' 't2' yes
'_dipole_dipole_relax.comp_index_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.comp_index_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_comp_index_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_comp_index_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_comp_index_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_chem_comp_index_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_comp_index_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_comp_index_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_comp_index_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_comp_index_id_2' 'cross_correlation_d_csa' yes
'_order_param.comp_index_id' 'order_param' yes
'_ph_titr_result.atom_observed_comp_index_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_comp_index_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.comp_index_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_exptl.comp_index_id_start' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_exptl.comp_index_id_end' 'deduced_secd_struct_exptl' yes
'_deduced_secd_struct_feature.comp_index_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.heavy_atom_comp_index_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_comp_index_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_comp_index_id' 'deduced_h_bond' yes
'_atom_site.label_comp_index_id' 'atom_site' yes
'_terminal_residue.comp_index_id' 'terminal_residue' yes
'_rep_conf.comp_index_id' 'rep_conf' yes
'_angular_order_param.comp_index_id' 'angular_order_param' yes
'_tertiary_struct.comp_index_id' 'tertiary_struct' yes
'_secondary_struct.comp_index_id_start' 'secondary_struct' yes
'_secondary_struct.comp_index_id_end' 'secondary_struct' yes
'_bond_annotation.comp_index_id_1' 'bond_annotation' yes
'_bond_annotation.comp_index_id_2' 'bond_annotation' yes
'_structure_interaction.comp_index_id_1' 'structure_interaction' yes
'_structure_interaction.comp_index_id_2' 'structure_interaction' yes
'_dist_constraint.comp_index_id' 'dist_constraint' yes
'_floating_chirality.comp_index_id_1' 'floating_chirality' yes
'_floating_chirality.comp_index_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.comp_index_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.comp_index_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.comp_index_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.comp_index_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.comp_index_id_1' 'rdc_constraint' yes
'_rdc_constraint.comp_index_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.comp_index_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.comp_index_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.comp_index_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.comp_index_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.comp_index_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_index_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_index_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_index_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_index_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.comp_index_id' 'h_chem_shift_constraint' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_chem_comp_assembly.comp_index_id' '_entity_comp_index.id'
'_pdbx_poly_seq_scheme.comp_index_id' '_entity_comp_index.id'
'_pdbx_nonpoly_scheme.comp_index_id' '_entity_comp_index.id'
'_atom.comp_index_id' '_entity_comp_index.id'
'_bond.comp_index_id_1' '_entity_comp_index.id'
'_bond.comp_index_id_2' '_entity_comp_index.id'
'_deleted_atom.comp_index_id' '_entity_comp_index.id'
'_angle.comp_index_id_1' '_entity_comp_index.id'
'_angle.comp_index_id_2' '_entity_comp_index.id'
'_angle.comp_index_id_3' '_entity_comp_index.id'
'_torsion_angle.comp_index_id_1' '_entity_comp_index.id'
'_torsion_angle.comp_index_id_2' '_entity_comp_index.id'
'_torsion_angle.comp_index_id_3' '_entity_comp_index.id'
'_torsion_angle.comp_index_id_4' '_entity_comp_index.id'
'_assembly_segment.comp_index_id' '_entity_comp_index.id'
'_author_annotation.comp_index_id' '_entity_comp_index.id'
'_author_annotation.comp_index_id_start' '_entity_comp_index.id'
'_author_annotation.comp_index_id_end' '_entity_comp_index.id'
'_entity_poly_seq.comp_index_id' '_entity_comp_index.id'
'_entity_chimera_segment.comp_index_id_begin' '_entity_comp_index.id'
'_entity_chimera_segment.comp_index_id_end' '_entity_comp_index.id'
'_entity_comp_index_alt.entity_comp_index_id' '_entity_comp_index.id'
'_entity_bond.comp_index_id_1' '_entity_comp_index.id'
'_entity_bond.comp_index_id_2' '_entity_comp_index.id'
'_sample_component_atom_isotope.comp_index_id' '_entity_comp_index.id'
'_atom_chem_shift.comp_index_id' '_entity_comp_index.id'
'_coupling_constant.comp_index_id_1' '_entity_comp_index.id'
'_coupling_constant.comp_index_id_2' '_entity_comp_index.id'
'_assigned_peak_chem_shift.comp_index_id' '_entity_comp_index.id'
'_resonance_assignment.comp_index_id' '_entity_comp_index.id'
'_spin_system.comp_index_id' '_entity_comp_index.id'
'_isotope_effect.comp_index_id' '_entity_comp_index.id'
'_isotope_label_pattern.comp_index_id' '_entity_comp_index.id'
'_mol_interaction_chem_shift.comp_index_id' '_entity_comp_index.id'
'_cs_anisotropy.comp_index_id' '_entity_comp_index.id'
'_chem_shielding_tensor.comp_index_id' '_entity_comp_index.id'
'_theoretical_chem_shift.comp_index_id' '_entity_comp_index.id'
'_rdc.comp_index_id_1' '_entity_comp_index.id'
'_rdc.comp_index_id_2' '_entity_comp_index.id'
'_dipolar_coupling.comp_index_id_1' '_entity_comp_index.id'
'_dipolar_coupling.comp_index_id_2' '_entity_comp_index.id'
'_spectral_density.comp_index_id' '_entity_comp_index.id'
'_other_data.comp_index_id' '_entity_comp_index.id'
'_h_exch_rate.comp_index_id' '_entity_comp_index.id'
'_h_exch_protection_factor.comp_index_id' '_entity_comp_index.id'
'_homonucl_noe.comp_index_id_1' '_entity_comp_index.id'
'_homonucl_noe.comp_index_id_2' '_entity_comp_index.id'
'_heteronucl_noe.comp_index_id_1' '_entity_comp_index.id'
'_heteronucl_noe.comp_index_id_2' '_entity_comp_index.id'
'_t1.comp_index_id' '_entity_comp_index.id'
'_t1rho.comp_index_id' '_entity_comp_index.id'
'_t2.comp_index_id' '_entity_comp_index.id'
'_dipole_dipole_relax.comp_index_id_1' '_entity_comp_index.id'
'_dipole_dipole_relax.comp_index_id_2' '_entity_comp_index.id'
'_cross_correlation_dd.dipole_1_comp_index_id_1' '_entity_comp_index.id'
'_cross_correlation_dd.dipole_1_comp_index_id_2' '_entity_comp_index.id'
'_cross_correlation_dd.dipole_2_comp_index_id_1' '_entity_comp_index.id'
'_cross_correlation_dd.dipole_2_chem_comp_index_id_2' '_entity_comp_index.id'
'_cross_correlation_d_csa.dipole_comp_index_id_1' '_entity_comp_index.id'
'_cross_correlation_d_csa.dipole_comp_index_id_2' '_entity_comp_index.id'
'_cross_correlation_d_csa.csa_comp_index_id_1' '_entity_comp_index.id'
'_cross_correlation_d_csa.csa_comp_index_id_2' '_entity_comp_index.id'
'_order_param.comp_index_id' '_entity_comp_index.id'
'_ph_titr_result.atom_observed_comp_index_id' '_entity_comp_index.id'
'_ph_titr_result.atom_titrated_comp_index_id' '_entity_comp_index.id'
'_d_h_fractionation_factor.comp_index_id' '_entity_comp_index.id'
'_deduced_secd_struct_exptl.comp_index_id_start' '_entity_comp_index.id'
'_deduced_secd_struct_exptl.comp_index_id_end' '_entity_comp_index.id'
'_deduced_secd_struct_feature.comp_index_id' '_entity_comp_index.id'
'_deduced_h_bond.heavy_atom_comp_index_id_1' '_entity_comp_index.id'
'_deduced_h_bond.heavy_atom_comp_index_id_2' '_entity_comp_index.id'
'_deduced_h_bond.hydrogen_atom_comp_index_id' '_entity_comp_index.id'
'_atom_site.label_comp_index_id' '_entity_comp_index.id'
'_terminal_residue.comp_index_id' '_entity_comp_index.id'
'_rep_conf.comp_index_id' '_entity_comp_index.id'
'_angular_order_param.comp_index_id' '_entity_comp_index.id'
'_tertiary_struct.comp_index_id' '_entity_comp_index.id'
'_secondary_struct.comp_index_id_start' '_entity_comp_index.id'
'_secondary_struct.comp_index_id_end' '_entity_comp_index.id'
'_bond_annotation.comp_index_id_1' '_entity_comp_index.id'
'_bond_annotation.comp_index_id_2' '_entity_comp_index.id'
'_structure_interaction.comp_index_id_1' '_entity_comp_index.id'
'_structure_interaction.comp_index_id_2' '_entity_comp_index.id'
'_dist_constraint.comp_index_id' '_entity_comp_index.id'
'_floating_chirality.comp_index_id_1' '_entity_comp_index.id'
'_floating_chirality.comp_index_id_2' '_entity_comp_index.id'
'_torsion_angle_constraint.comp_index_id_1' '_entity_comp_index.id'
'_torsion_angle_constraint.comp_index_id_2' '_entity_comp_index.id'
'_torsion_angle_constraint.comp_index_id_3' '_entity_comp_index.id'
'_torsion_angle_constraint.comp_index_id_4' '_entity_comp_index.id'
'_rdc_constraint.comp_index_id_1' '_entity_comp_index.id'
'_rdc_constraint.comp_index_id_2' '_entity_comp_index.id'
'_j_three_bond_constraint.comp_index_id_1' '_entity_comp_index.id'
'_j_three_bond_constraint.comp_index_id_2' '_entity_comp_index.id'
'_j_three_bond_constraint.comp_index_id_3' '_entity_comp_index.id'
'_j_three_bond_constraint.comp_index_id_4' '_entity_comp_index.id'
'_ca_cb_constraint.comp_index_id_1' '_entity_comp_index.id'
'_ca_cb_constraint.comp_index_id_2' '_entity_comp_index.id'
'_ca_cb_constraint.comp_index_id_3' '_entity_comp_index.id'
'_ca_cb_constraint.comp_index_id_4' '_entity_comp_index.id'
'_ca_cb_constraint.comp_index_id_5' '_entity_comp_index.id'
'_h_chem_shift_constraint.comp_index_id' '_entity_comp_index.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_comp_index.auth_seq_id
_item_description.description
;
Author supplied sequence number identifying the position in the sequence
of the polymer where the alternate residue or chemical compound is located.
;
_item.name '_entity_comp_index.auth_seq_id'
_item.category_id 'entity_comp_index'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_comp_index.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_entity_comp_index.comp_id'
_item.category_id 'entity_comp_index'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_comp_index.comp_label
_item_description.description
;
Pointer to a saveframe of the category chem_comp.
;
_item.name '_entity_comp_index.comp_label'
_item.category_id 'entity_comp_index'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__entity_comp_index.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_comp_index.entry_id'
_item.category_id 'entity_comp_index'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_comp_index.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_comp_index.entity_id'
_item.category_id 'entity_comp_index'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_poly_seq
_category.description
;
category description not available
;
_category.id 'entity_poly_seq'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_poly_seq.num'
'_entity_poly_seq.entry_id'
'_entity_poly_seq.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_poly_seq.hetero
_item_description.description
;
A flag to indicate whether this monomer in the polymer is heterogeneous
in sequence. This would be rare.
;
_item.name '_entity_poly_seq.hetero'
_item.category_id 'entity_poly_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_poly_seq.mon_id
_item_description.description
;
This data item is a pointer to '_Chem_comp.ID' in the chem_comp category.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_poly_seq.mon_id' 'entity_poly_seq' no
'_pdbx_poly_seq_scheme.mon_id' 'pdbx_poly_seq_scheme' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_pdbx_poly_seq_scheme.mon_id' '_entity_poly_seq.mon_id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_poly_seq.num
_item_description.description
;
The value of '_Entity_poly_seq.Num must uniquely and sequentially identify
a record in the Entiy_poly_seq list. Note that this item must be a number and
that the sequence numbers must progress in increasing numerical order.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_poly_seq.num' 'entity_poly_seq' no
'_pdbx_poly_seq_scheme.seq_id' 'pdbx_poly_seq_scheme' no
'_atom_site.label_seq_id' 'atom_site' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_pdbx_poly_seq_scheme.seq_id' '_entity_poly_seq.num'
'_atom_site.label_seq_id' '_entity_poly_seq.num'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_poly_seq.comp_index_id
_item_description.description
;
?
;
_item.name '_entity_poly_seq.comp_index_id'
_item.category_id 'entity_poly_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_poly_seq.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_poly_seq.entry_id'
_item.category_id 'entity_poly_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_poly_seq.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_poly_seq.entity_id'
_item.category_id 'entity_poly_seq'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_chimera_segment
_category.description
;
category description not available
;
_category.id 'entity_chimera_segment'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_chimera_segment.id'
'_entity_chimera_segment.entry_id'
'_entity_chimera_segment.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_chimera_segment.id
_item_description.description
;
The value of _Entity_fragment.id must uniquely identify a record in the
Entity_fragment list.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_chimera_segment.id' 'entity_chimera_segment' yes
'_entity_natural_src.entity_chimera_segment_id' 'entity_natural_src' yes
'_natural_source_db.entity_chimera_segment_id' 'natural_source_db' yes
'_entity_experimental_src.entity_chimera_segment_id' 'entity_experimental_src' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_entity_natural_src.entity_chimera_segment_id' '_entity_chimera_segment.id'
'_natural_source_db.entity_chimera_segment_id' '_entity_chimera_segment.id'
'_entity_experimental_src.entity_chimera_segment_id' '_entity_chimera_segment.id'
stop_
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__entity_chimera_segment.comp_index_id_begin
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_entity_chimera_segment.comp_index_id_begin'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_chimera_segment.comp_index_id_end
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_entity_chimera_segment.comp_index_id_end'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_chimera_segment.seq_id_begin
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_entity_chimera_segment.seq_id_begin'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
25
;
stop_
_item_type.code 'int'
save_
save__entity_chimera_segment.seq_id_end
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_entity_chimera_segment.seq_id_end'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
78
;
stop_
_item_type.code 'int'
save_
save__entity_chimera_segment.details
_item_description.description
;
Text providing additional information about the fragment from the molecular
entity.
;
_item.name '_entity_chimera_segment.details'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_chimera_segment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_chimera_segment.entry_id'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_chimera_segment.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_chimera_segment.entity_id'
_item.category_id 'entity_chimera_segment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_comp_index_alt
_category.description
;
category description not available
;
_category.id 'entity_comp_index_alt'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_comp_index_alt.entity_comp_index_id'
'_entity_comp_index_alt.comp_id'
'_entity_comp_index_alt.entry_id'
'_entity_comp_index_alt.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_comp_index_alt.entity_comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_entity_comp_index_alt.entity_comp_index_id'
_item.category_id 'entity_comp_index_alt'
_item.mandatory_code yes
loop_
_item_examples.case
;
35
;
stop_
_item_type.code 'int'
save_
save__entity_comp_index_alt.auth_seq_id
_item_description.description
;
Author supplied sequence number identifying the position in the sequence
of the polymer where the alternate residue or chemical compound is located.
;
_item.name '_entity_comp_index_alt.auth_seq_id'
_item.category_id 'entity_comp_index_alt'
_item.mandatory_code no
loop_
_item_examples.case
;
27
;
stop_
_item_type.code 'code'
save_
save__entity_comp_index_alt.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_entity_comp_index_alt.comp_id'
_item.category_id 'entity_comp_index_alt'
_item.mandatory_code yes
loop_
_item_examples.case
;
ALA
;
stop_
_item_type.code 'code'
save_
save__entity_comp_index_alt.comp_label
_item_description.description
;
Pointer to a saveframe of the category chem_comp.
;
_item.name '_entity_comp_index_alt.comp_label'
_item.category_id 'entity_comp_index_alt'
_item.mandatory_code yes
loop_
_item_examples.case
;
ALA
;
stop_
_item_type.code 'label'
save_
save__entity_comp_index_alt.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_comp_index_alt.entry_id'
_item.category_id 'entity_comp_index_alt'
_item.mandatory_code yes
loop_
_item_examples.case
;
6021
;
stop_
_item_type.code 'code'
save_
save__entity_comp_index_alt.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_comp_index_alt.entity_id'
_item.category_id 'entity_comp_index_alt'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save_entity_bond
_category.description
;
Items in the entity_bond category define chemical bonds that are unique to the entity.
;
_category.id 'entity_bond'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_bond.id'
'_entity_bond.entry_id'
'_entity_bond.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_bond.id
_item_description.description
;
The value of _Entity_bond.id must uniquely identify a record in the Entity_bond
list.
;
_item.name '_entity_bond.id'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_bond.type
_item_description.description
;
A common chemical bond descriptive name.
;
_item.name '_entity_bond.type'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_bond.value_order
_item_description.description
;
The value that should be taken as the target for the chemical bond associated
with the specified atoms expressed as a bond order.
;
_item.name '_entity_bond.value_order'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_bond.comp_index_id_1
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_entity_bond.comp_index_id_1'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_bond.comp_id_1
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_entity_bond.comp_id_1'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_bond.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_entity_bond.atom_id_1'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__entity_bond.comp_index_id_2
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_entity_bond.comp_index_id_2'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_bond.comp_id_2
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_entity_bond.comp_id_2'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_bond.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_entity_bond.atom_id_2'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__entity_bond.details
_item_description.description
;
A text description of the bond.
;
_item.name '_entity_bond.details'
_item.category_id 'entity_bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_bond.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_bond.entry_id'
_item.category_id 'entity_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_bond.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_bond.entity_id'
_item.category_id 'entity_bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_citation
_category.description
;
Items in the entity_citation category provide pointers to citations saveframes where citations that describe the entity are defined.
;
_category.id 'entity_citation'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_citation.citation_id'
'_entity_citation.entry_id'
'_entity_citation.entity_id'
stop_
loop_
_category_group.id
'inclusive_group'
'entity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_entity_citation.citation_id'
_item.category_id 'entity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_entity_citation.citation_label'
_item.category_id 'entity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
citation 1
;
stop_
_item_type.code 'label'
save_
save__entity_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_citation.entry_id'
_item.category_id 'entity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_citation.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_citation.entity_id'
_item.category_id 'entity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_natural_src_list
_category.description
;
Items in the entity_natural_src_list category define an entity natural source saveframe.
;
_category.id 'entity_natural_src_list'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_natural_src_list.entry_id'
'_entity_natural_src_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'natural_source'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_natural_src_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_entity_natural_src_list.sf_category'
_item.category_id 'entity_natural_src_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_natural_src_list.sf_framecode
_item_description.description
;
Framecode for the save frame where the natural sources for each entity
are listed.
;
_item.name '_entity_natural_src_list.sf_framecode'
_item.category_id 'entity_natural_src_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_natural_src_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'.
;
_item.name '_entity_natural_src_list.entry_id'
_item.category_id 'entity_natural_src_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_natural_src_list.id
_item_description.description
;
An integer value that is the unique identifier for saveframes of the type
'natural_source'.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_natural_src_list.id' 'entity_natural_src_list' yes
'_entity_natural_src.entity_natural_src_list_id' 'entity_natural_src' yes
'_natural_source_db.entity_natural_src_list_id' 'natural_source_db' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_entity_natural_src.entity_natural_src_list_id' '_entity_natural_src_list.id'
'_natural_source_db.entity_natural_src_list_id' '_entity_natural_src_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_natural_src
_category.description
;
Items in the entity_natural_src category describe the organism, virus, or other naturally occuring object that is the original source for a molecular entity or a major portion of a molecular entity.
;
_category.id 'entity_natural_src'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_natural_src.id'
'_entity_natural_src.entry_id'
'_entity_natural_src.entity_natural_src_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'natural_source'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_natural_src.id
_item_description.description
;
An integer value that uniquely identifies the natural source provided.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_natural_src.id' 'entity_natural_src' yes
'_natural_source_db.entity_natural_src_id' 'natural_source_db' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_natural_source_db.entity_natural_src_id' '_entity_natural_src.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_natural_src.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_natural_src.entity_id'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_natural_src.entity_label
_item_description.description
;
Pointer to a saveframe of the category 'entity.' This is the label assigned
to the molecular entity by the author when completing the molecular entity
portion of the deposition.
;
_item.name '_entity_natural_src.entity_label'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
lysozyme
;
stop_
_item_type.code 'label'
save_
save__entity_natural_src.entity_chimera_segment_id
_item_description.description
;
Pointer to '_Entity_fragment.ID'
;
_item.name '_entity_natural_src.entity_chimera_segment_id'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_natural_src.ncbi_taxonomy_id
_item_description.description
;
NCBI taxonomy ID
;
_item.name '_entity_natural_src.ncbi_taxonomy_id'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
9606
;
stop_
_item_type.code 'code'
save_
save__entity_natural_src.type
_item_description.description
;
The molecular entity or biopolymer has no natural source.
;
_item.name '_entity_natural_src.type'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
organism
;
stop_
_item_default.value 'organism'
_item_type.code 'line'
save_
save__entity_natural_src.common
_item_description.description
;
The molecular entity of biopolymer is common to more than one natural source.
;
_item.name '_entity_natural_src.common'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yes_no'
save_
save__entity_natural_src.organism_name_scientific
_item_description.description
;
Scientific name for the organism. Usually a combination of the genus and
species for the organism.
;
_item.name '_entity_natural_src.organism_name_scientific'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
Homo sapiens
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.organism_name_common
_item_description.description
;
Common name used for the biological organism.
;
_item.name '_entity_natural_src.organism_name_common'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
baker's yeast
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.organism_acronym
_item_description.description
;
A common acronym used to identify the organism.
;
_item.name '_entity_natural_src.organism_acronym'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.ictvdb_decimal_code
_item_description.description
;
ICTV database decimal code for a virus
;
_item.name '_entity_natural_src.ictvdb_decimal_code'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.superkingdom
_item_description.description
;
Scientific superkingdom classification for an organism as defined by NCBI
taxonomists.
;
_item.name '_entity_natural_src.superkingdom'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Archaea ?
Eubacteria prokaryotes
Eukaryota ?
Viroid ?
Viruses ?
Other ?
Unclassified ?
stop_
loop_
_item_examples.case
;
Eukaryota
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.kingdom
_item_description.description
;
Kingdom classifications for an organism as defined by NCBI taxonomists.
;
_item.name '_entity_natural_src.kingdom'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Metazoa ?
Fungi ?
Viridiplantae ?
Protista ?
'Not applicable' ?
stop_
loop_
_item_examples.case
;
Metazoa
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.genus
_item_description.description
;
Genus for the natural organism
;
_item.name '_entity_natural_src.genus'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
Saccharomyces
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.species
_item_description.description
;
Scientific name for the species of the organism as defined by NCBI taxonomists
whenever possible.
;
_item.name '_entity_natural_src.species'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
cerevisiae
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.strain
_item_description.description
;
The scientific name for the strain of an organism.
;
_item.name '_entity_natural_src.strain'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
gm3c2
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.variant
_item_description.description
;
Name used to classify the variant of an organism.
;
_item.name '_entity_natural_src.variant'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
BRU isolate
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.subvariant
_item_description.description
;
Name used to define a subvariant of an organism.
;
_item.name '_entity_natural_src.subvariant'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.organ
_item_description.description
;
The organ of a higher organism where the biopolymer is found in nature.
;
_item.name '_entity_natural_src.organ'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
brain ?
heart ?
intestine ?
kidney ?
liver ?
lung ?
pancreas ?
skin ?
testicle ?
stop_
loop_
_item_examples.case
;
pancreas
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.tissue
_item_description.description
;
The tissue from an organism that is the natural or experimental source
of the molecule.
;
_item.name '_entity_natural_src.tissue'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
skin ?
stop_
loop_
_item_examples.case
;
muscle
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.tissue_fraction
_item_description.description
;
The fraction of the tissue that was used as the source of the molecular entity.
;
_item.name '_entity_natural_src.tissue_fraction'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.cell_line
_item_description.description
;
Name the specific line of cells used in the experiment.
;
_item.name '_entity_natural_src.cell_line'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
4-4-20 murine-murine hybridoma
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.cell_type
_item_description.description
;
Identify the particular kind of cell.
;
_item.name '_entity_natural_src.cell_type'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
B-lymphocyte
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.atcc_number
_item_description.description
;
Organism culture number defined in the American Type Culture Collection.
;
_item.name '_entity_natural_src.atcc_number'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
27355
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.organelle
_item_description.description
;
Organized structure within a cell.
;
_item.name '_entity_natural_src.organelle'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
chloroplast ?
'endoplamic reticulum' ?
golgi ?
mitochondria ?
nucleus ?
stop_
loop_
_item_examples.case
;
mitochondria
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.cellular_location
_item_description.description
;
The cellular location where the molecular entity is found with in the natural
source for the molecular entity.
;
_item.name '_entity_natural_src.cellular_location'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
cytoplasm
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.fragment
_item_description.description
;
A domain or fragment of the molecule.
;
_item.name '_entity_natural_src.fragment'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.fraction
_item_description.description
;
Indicate cellular location here such as cytoplasm periplasm extracellular etc.
;
_item.name '_entity_natural_src.fraction'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
cytoplasm
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.secretion
_item_description.description
;
If the molecule was isolated from a particular secretion such as saliva
urine or venom this is stated here.
;
_item.name '_entity_natural_src.secretion'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
saliva ?
semen ?
'vaginal fluid' ?
venom ?
stop_
loop_
_item_examples.case
;
venom
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.plasmid
_item_description.description
;
The name for a plasmid that naturally contains the gene for the biopolymer.
;
_item.name '_entity_natural_src.plasmid'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
PPED5-399
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.plasmid_details
_item_description.description
;
Text details describing the plasmid that is the natural source for the
molecular entity.
;
_item.name '_entity_natural_src.plasmid_details'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_natural_src.gene_mnemonic
_item_description.description
;
Name of the gene that is the source of the biopolymer
;
_item.name '_entity_natural_src.gene_mnemonic'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
tmoC
;
stop_
_item_type.code 'line'
save_
save__entity_natural_src.dev_stage
_item_description.description
;
For molecular entities that are present in an organism only at a define
stage in the development of the organism, the stage they are present.
;
_item.name '_entity_natural_src.dev_stage'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_natural_src.details
_item_description.description
;
Give any other remarks or comments on the biological source which may be
relevant.
;
_item.name '_entity_natural_src.details'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
German collection of microorganisms (DSM)
;
stop_
_item_type.code 'text'
save_
save__entity_natural_src.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_entity_natural_src.citation_id'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_natural_src.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_entity_natural_src.citation_label'
_item.category_id 'entity_natural_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__entity_natural_src.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_natural_src.entry_id'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_natural_src.entity_natural_src_list_id
_item_description.description
;
Pointer to '_Entity_natural_src_list.ID'
;
_item.name '_entity_natural_src.entity_natural_src_list_id'
_item.category_id 'entity_natural_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_natural_source_db
_category.description
;
Items in the natural_source_db category define links to databases that contain information about the organisms and entities that are the natural source for molecular entities.
;
_category.id 'natural_source_db'
_category.mandatory_code yes
loop_
_category_key.name
'_natural_source_db.entity_natural_src_id'
'_natural_source_db.database_code'
'_natural_source_db.entry_code'
'_natural_source_db.entry_id'
'_natural_source_db.entity_natural_src_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'natural_source'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__natural_source_db.entity_natural_src_id
_item_description.description
;
Pointer to '_Entity_natural_src.ID'
;
_item.name '_natural_source_db.entity_natural_src_id'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__natural_source_db.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_natural_source_db.entity_id'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__natural_source_db.entity_label
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_natural_source_db.entity_label'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__natural_source_db.entity_chimera_segment_id
_item_description.description
;
Pointer to '_Entity_fragment.ID'
;
_item.name '_natural_source_db.entity_chimera_segment_id'
_item.category_id 'natural_source_db'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__natural_source_db.database_code
_item_description.description
;
Code or abbreviation used by a database organization.
;
_item.name '_natural_source_db.database_code'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
TAIR
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.database_type
_item_description.description
;
The kind of database where the data are located.
;
_item.name '_natural_source_db.database_type'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
sequence; structure; genome
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.entry_code
_item_description.description
;
The accession code assigned to the entry by the database.
;
_item.name '_natural_source_db.entry_code'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.entry_type
_item_description.description
;
Defines whether the current version of the entry is the original version
or an updated version.
;
_item.name '_natural_source_db.entry_type'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
original
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.orf_code
_item_description.description
;
Code assigned to the open reading frame coding for a protein or nucleic acid.
;
_item.name '_natural_source_db.orf_code'
_item.category_id 'natural_source_db'
_item.mandatory_code no
loop_
_item_examples.case
;
at1g01020
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.gene_locus_code
_item_description.description
;
Unique code assigned to the locus for the gene in the genome.
;
_item.name '_natural_source_db.gene_locus_code'
_item.category_id 'natural_source_db'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.gene_cdna_code
_item_description.description
;
The unique code assigned to a cDNA sequence for the gene.
;
_item.name '_natural_source_db.gene_cdna_code'
_item.category_id 'natural_source_db'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__natural_source_db.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_natural_source_db.entry_id'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__natural_source_db.entity_natural_src_list_id
_item_description.description
;
Pointer to '_Entity_natural_src_list.ID'
;
_item.name '_natural_source_db.entity_natural_src_list_id'
_item.category_id 'natural_source_db'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_experimental_src_list
_category.description
;
Items in the entity_experimental_src_list category define an entity experimental source saveframe.
;
_category.id 'entity_experimental_src_list'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_experimental_src_list.entry_id'
'_entity_experimental_src_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'experimental_source'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_experimental_src_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_entity_experimental_src_list.sf_category'
_item.category_id 'entity_experimental_src_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_experimental_src_list.sf_framecode
_item_description.description
;
The framecode for the save frame where the experimental sources for each
entity are listed.
;
_item.name '_entity_experimental_src_list.sf_framecode'
_item.category_id 'entity_experimental_src_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_experimental_src_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'.
;
_item.name '_entity_experimental_src_list.entry_id'
_item.category_id 'entity_experimental_src_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_experimental_src_list.id
_item_description.description
;
An integer value that uniquely identifies one Entity_experimental_src saveframe
from all other saveframes of this category.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_experimental_src_list.id' 'entity_experimental_src_list' yes
'_entity_experimental_src.entity_experimental_src_list_id' 'entity_experimental_src' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_entity_experimental_src.entity_experimental_src_list_id' '_entity_experimental_src_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_experimental_src
_category.description
;
Items in the entity_experimental_src category describe the biological system or other means used to produce a molecular entity for experimental purposes.
;
_category.id 'entity_experimental_src'
_category.mandatory_code yes
loop_
_category_key.name
'_entity_experimental_src.id'
'_entity_experimental_src.entry_id'
'_entity_experimental_src.entity_experimental_src_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'experimental_source'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_experimental_src.id
_item_description.description
;
An integer value that uniquely identifies each experimental source in the
list of experimental sources.
;
_item.name '_entity_experimental_src.id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_experimental_src.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_experimental_src.entity_id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_experimental_src.entity_label
_item_description.description
;
Pointer to a saveframe of the category 'entity.' This is the label assigned
to the molecular entity by the author when completing the molecular entity
portion of the deposition.
;
_item.name '_entity_experimental_src.entity_label'
_item.category_id 'entity_experimental_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
lysozyme
;
stop_
_item_type.code 'label'
save_
save__entity_experimental_src.entity_chimera_segment_id
_item_description.description
;
Pointer to '_Entity_fragment.ID'
;
_item.name '_entity_experimental_src.entity_chimera_segment_id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_experimental_src.production_method
_item_description.description
;
The laboratory method used to obtain the biopolymers studied.
;
_item.name '_entity_experimental_src.production_method'
_item.category_id 'entity_experimental_src'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'recombinant technology' ?
'Purified from the natural source' ?
'chemical synthesis' ?
'cell free synthesis' ?
'enzymatic semisynthesis' ?
'reverse transcriptase' ?
'obtained from a vendor' ?
stop_
loop_
_item_examples.case
;
recombinant technology
;
stop_
_item_default.value 'recombinant technology'
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_scientific_name
_item_description.description
;
The scientific name of the organism that served as host for the production
of the entity.
;
_item.name '_entity_experimental_src.host_org_scientific_name'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
Escherichia coli
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_name_common
_item_description.description
;
Common name for the organism used as a host in producing a biopolymer.
;
_item.name '_entity_experimental_src.host_org_name_common'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
E. coli
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_details
_item_description.description
;
Additional information or comments regarding the host organism.
;
_item.name '_entity_experimental_src.host_org_details'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_experimental_src.host_org_ncbi_taxonomy_id
_item_description.description
;
Unique ID assigned by the NCBI to organisms.
;
_item.name '_entity_experimental_src.host_org_ncbi_taxonomy_id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_experimental_src.host_org_genus
_item_description.description
;
Genus of the host organism
;
_item.name '_entity_experimental_src.host_org_genus'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
Escherichia
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_species
_item_description.description
;
Scientific name for the species of the organism as defined by NCBI taxonomists
whenever possible.
;
_item.name '_entity_experimental_src.host_org_species'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
coli
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_strain
_item_description.description
;
The scientific name for the strain of an organism.
;
_item.name '_entity_experimental_src.host_org_strain'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
K12
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_variant
_item_description.description
;
Name used to classify the variant of an organism.
;
_item.name '_entity_experimental_src.host_org_variant'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_subvariant
_item_description.description
;
In the hierarchy of organism nomenclature, the name or code designating
a subvariant of the organism used to express the entity. These may specific hosts
designed with mutations to knock out proteases or other enzymes deleterious to
the production of the entity.
;
_item.name '_entity_experimental_src.host_org_subvariant'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_organ
_item_description.description
;
Cell lines used as hosts in producing macromolecules often originate from
a particular organ (e.g. chinese hamster ovary cells). If this is true for the
system used in this study please enter the name of the organ that was the source
for the cell line used.
;
_item.name '_entity_experimental_src.host_org_organ'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_tissue
_item_description.description
;
The tissue from an organism that is the natural or experimental source
of the molecule.
;
_item.name '_entity_experimental_src.host_org_tissue'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_tissue_fraction
_item_description.description
;
The fraction of the tissue which expressed the molecule.
;
_item.name '_entity_experimental_src.host_org_tissue_fraction'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_cell_line
_item_description.description
;
The name for the cell line used in producing the biopolymer.
;
_item.name '_entity_experimental_src.host_org_cell_line'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
hela
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_cell_type
_item_description.description
;
Specific type of cell if used to produce the biopolymer.
;
_item.name '_entity_experimental_src.host_org_cell_type'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_cellular_location
_item_description.description
;
Identifies the location inside (or outside) the cell which expressed the
molecule. Proteins may be excreted from a production host or produced in the periplasmic
space as opposed to the cytoplasm.
;
_item.name '_entity_experimental_src.host_org_cellular_location'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
cytoplasm
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_organelle
_item_description.description
;
Specific organelle which expressed the molecule.
;
_item.name '_entity_experimental_src.host_org_organelle'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
mitochondria
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_gene
_item_description.description
;
Specific gene which expressed the molecule.
;
_item.name '_entity_experimental_src.host_org_gene'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
HIV-1 pol
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_culture_collection
_item_description.description
;
Culture collection of the expression system.
;
_item.name '_entity_experimental_src.host_org_culture_collection'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_atcc_number
_item_description.description
;
Organism culture number defined in the American Type Culture Collection.
;
_item.name '_entity_experimental_src.host_org_atcc_number'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
27355
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.vector_type
_item_description.description
;
The kind of biological object used to insert a gene into a host organism
for the production of a biological molecule studied in the entry.
;
_item.name '_entity_experimental_src.vector_type'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
plasmid ?
virus ?
cosmid ?
stop_
loop_
_item_examples.case
;
'plasmid'
;
stop_
_item_default.value 'plasmid'
_item_type.code 'line'
save_
save__entity_experimental_src.pdbview_host_org_vector_name
_item_description.description
;
?
;
_item.name '_entity_experimental_src.pdbview_host_org_vector_name'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
baculovirus
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.pdbview_plasmid_name
_item_description.description
;
?
;
_item.name '_entity_experimental_src.pdbview_plasmid_name'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
pBR322
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.vector_name
_item_description.description
;
Name given to the vector used to insert a gene into a host organism.
;
_item.name '_entity_experimental_src.vector_name'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
pBR322
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.vector_details
_item_description.description
;
Text comments regarding the vector used to produce the biopolymer.
;
_item.name '_entity_experimental_src.vector_details'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_experimental_src.vendor_name
_item_description.description
;
Commercial or academic vendor that supplied the defined item.
;
_item.name '_entity_experimental_src.vendor_name'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
Aldrich
;
stop_
_item_type.code 'line'
save_
save__entity_experimental_src.host_org_dev_stage
_item_description.description
;
A string to indicate the life-cycle or cell development cycle in which
the gene is expressed and the mature protein is active.
;
_item.name '_entity_experimental_src.host_org_dev_stage'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_experimental_src.details
_item_description.description
;
Additional information relevant to the data in the current saveframe or
to a specific data item is entered as a value to this tag. The information entered
must supplement information already present. Whenever possible data should
associated with specific data tags and not included in the value to a '_Details' tag.
;
_item.name '_entity_experimental_src.details'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_experimental_src.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_entity_experimental_src.citation_id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_experimental_src.citation_label
_item_description.description
;
Pointer to a saveframe of the category 'citation.' The citation would describe
how, for example, the vector was constructed and the host organism picked.
;
_item.name '_entity_experimental_src.citation_label'
_item.category_id 'entity_experimental_src'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__entity_experimental_src.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_experimental_src.entry_id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_experimental_src.entity_experimental_src_list_id
_item_description.description
;
Pointer to '_Entity_experimental_src_list.ID'
;
_item.name '_entity_experimental_src.entity_experimental_src_list_id'
_item.category_id 'entity_experimental_src'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_chem_comp
_category.description
;
Items in the chem_comp category describe the chemical components that make up a molecular entity.
;
_category.id 'chem_comp'
loop_
_category_key.name
'_chem_comp.entry_id'
'_chem_comp.id'
'_chem_comp.image_file_name'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_chem_comp.sf_category'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this chemical component.
;
_item.name '_chem_comp.sf_framecode'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
NADP
;
stop_
_item_type.code 'code'
save_
save__chem_comp.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp.entry_id'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp.id
_item_description.description
;
A code that uniquely identifies the chemical component from all other chemical
components in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_chem_comp.id' 'chem_comp' yes
'_chem_comp_assembly.comp_id' 'chem_comp_assembly' yes
'_pdbx_poly_seq_scheme.comp_id' 'pdbx_poly_seq_scheme' yes
'_pdbx_nonpoly_scheme.comp_id' 'pdbx_nonpoly_scheme' yes
'_atom.comp_id' 'atom' yes
'_atom.pdb_comp_id' 'atom' yes
'_bond.comp_id_1' 'bond' yes
'_bond.comp_id_2' 'bond' yes
'_deleted_atom.comp_id' 'deleted_atom' yes
'_angle.comp_id_1' 'angle' yes
'_angle.comp_id_2' 'angle' yes
'_angle.comp_id_3' 'angle' yes
'_torsion_angle.comp_id_1' 'torsion_angle' yes
'_torsion_angle.comp_id_2' 'torsion_angle' yes
'_torsion_angle.comp_id_3' 'torsion_angle' yes
'_torsion_angle.comp_id_4' 'torsion_angle' yes
'_assembly_segment.comp_id' 'assembly_segment' yes
'_author_annotation.comp_id' 'author_annotation' yes
'_entity.nonpolymer_comp_id' 'entity' yes
'_entity_comp_index.comp_id' 'entity_comp_index' yes
'_entity_comp_index_alt.comp_id' 'entity_comp_index_alt' yes
'_entity_bond.comp_id_1' 'entity_bond' yes
'_entity_bond.comp_id_2' 'entity_bond' yes
'_chem_comp_common_name.comp_id' 'chem_comp_common_name' yes
'_chem_comp_systematic_name.comp_id' 'chem_comp_systematic_name' yes
'_chem_comp_smiles.comp_id' 'chem_comp_smiles' yes
'_chem_comp_keyword.comp_id' 'chem_comp_keyword' yes
'_characteristic.comp_id' 'characteristic' yes
'_chem_comp_atom.comp_id' 'chem_comp_atom' yes
'_atom_nomenclature.comp_id' 'atom_nomenclature' yes
'_chem_comp_bond.comp_id' 'chem_comp_bond' yes
'_chem_comp_tor.comp_id' 'chem_comp_tor' yes
'_chem_comp_angle.comp_id' 'chem_comp_angle' yes
'_chem_comp_db_link.comp_id' 'chem_comp_db_link' yes
'_chem_comp_citation.comp_id' 'chem_comp_citation' yes
'_sample_component_atom_isotope.comp_id' 'sample_component_atom_isotope' yes
'_atom_chem_shift.comp_id' 'atom_chem_shift' yes
'_coupling_constant.comp_id_1' 'coupling_constant' yes
'_coupling_constant.comp_id_2' 'coupling_constant' yes
'_assigned_peak_chem_shift.comp_id' 'assigned_peak_chem_shift' yes
'_resonance_assignment.comp_id' 'resonance_assignment' yes
'_spin_system.comp_id' 'spin_system' yes
'_isotope_effect.comp_id' 'isotope_effect' yes
'_isotope_label_pattern.comp_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.comp_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.comp_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.comp_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.comp_id' 'theoretical_chem_shift' yes
'_rdc.comp_id_1' 'rdc' yes
'_rdc.comp_id_2' 'rdc' yes
'_dipolar_coupling.comp_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.comp_id_2' 'dipolar_coupling' yes
'_spectral_density.comp_id' 'spectral_density' yes
'_other_data.comp_id' 'other_data' yes
'_h_exch_rate.comp_id' 'h_exch_rate' yes
'_h_exch_protection_factor.comp_id' 'h_exch_protection_factor' yes
'_homonucl_noe.comp_id_1' 'homonucl_noe' yes
'_homonucl_noe.comp_id_2' 'homonucl_noe' yes
'_heteronucl_noe.comp_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.comp_id_2' 'heteronucl_noe' yes
'_t1.comp_id' 't1' yes
'_t1rho.comp_id' 't1rho' yes
'_t2.comp_id' 't2' yes
'_dipole_dipole_relax.comp_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.comp_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_comp_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_comp_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_comp_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_comp_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_comp_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_comp_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_comp_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_comp_id_2' 'cross_correlation_d_csa' yes
'_order_param.comp_id' 'order_param' yes
'_ph_titr_result.atom_observed_comp_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_comp_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.comp_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_feature.comp_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.heavy_atom_comp_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_comp_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_comp_id' 'deduced_h_bond' yes
'_atom_site.label_comp_id' 'atom_site' yes
'_atom_site.pdb_comp_id' 'atom_site' yes
'_terminal_residue.comp_id' 'terminal_residue' yes
'_rep_conf.comp_id' 'rep_conf' yes
'_angular_order_param.comp_id' 'angular_order_param' yes
'_tertiary_struct.comp_id' 'tertiary_struct' yes
'_bond_annotation.comp_id_1' 'bond_annotation' yes
'_bond_annotation.comp_id_2' 'bond_annotation' yes
'_structure_interaction.comp_id_1' 'structure_interaction' yes
'_structure_interaction.comp_id_2' 'structure_interaction' yes
'_dist_constraint.comp_id' 'dist_constraint' yes
'_floating_chirality.comp_id_1' 'floating_chirality' yes
'_floating_chirality.comp_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.comp_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.comp_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.comp_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.comp_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.comp_id_1' 'rdc_constraint' yes
'_rdc_constraint.comp_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.comp_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.comp_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.comp_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.comp_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.comp_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.comp_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.comp_id' 'h_chem_shift_constraint' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_chem_comp_assembly.comp_id' '_chem_comp.id'
'_pdbx_poly_seq_scheme.comp_id' '_chem_comp.id'
'_pdbx_nonpoly_scheme.comp_id' '_chem_comp.id'
'_atom.comp_id' '_chem_comp.id'
'_atom.pdb_comp_id' '_chem_comp.id'
'_bond.comp_id_1' '_chem_comp.id'
'_bond.comp_id_2' '_chem_comp.id'
'_deleted_atom.comp_id' '_chem_comp.id'
'_angle.comp_id_1' '_chem_comp.id'
'_angle.comp_id_2' '_chem_comp.id'
'_angle.comp_id_3' '_chem_comp.id'
'_torsion_angle.comp_id_1' '_chem_comp.id'
'_torsion_angle.comp_id_2' '_chem_comp.id'
'_torsion_angle.comp_id_3' '_chem_comp.id'
'_torsion_angle.comp_id_4' '_chem_comp.id'
'_assembly_segment.comp_id' '_chem_comp.id'
'_author_annotation.comp_id' '_chem_comp.id'
'_entity.nonpolymer_comp_id' '_chem_comp.id'
'_entity_comp_index.comp_id' '_chem_comp.id'
'_entity_comp_index_alt.comp_id' '_chem_comp.id'
'_entity_bond.comp_id_1' '_chem_comp.id'
'_entity_bond.comp_id_2' '_chem_comp.id'
'_chem_comp_common_name.comp_id' '_chem_comp.id'
'_chem_comp_systematic_name.comp_id' '_chem_comp.id'
'_chem_comp_smiles.comp_id' '_chem_comp.id'
'_chem_comp_keyword.comp_id' '_chem_comp.id'
'_characteristic.comp_id' '_chem_comp.id'
'_chem_comp_atom.comp_id' '_chem_comp.id'
'_atom_nomenclature.comp_id' '_chem_comp.id'
'_chem_comp_bond.comp_id' '_chem_comp.id'
'_chem_comp_tor.comp_id' '_chem_comp.id'
'_chem_comp_angle.comp_id' '_chem_comp.id'
'_chem_comp_db_link.comp_id' '_chem_comp.id'
'_chem_comp_citation.comp_id' '_chem_comp.id'
'_sample_component_atom_isotope.comp_id' '_chem_comp.id'
'_atom_chem_shift.comp_id' '_chem_comp.id'
'_coupling_constant.comp_id_1' '_chem_comp.id'
'_coupling_constant.comp_id_2' '_chem_comp.id'
'_assigned_peak_chem_shift.comp_id' '_chem_comp.id'
'_resonance_assignment.comp_id' '_chem_comp.id'
'_spin_system.comp_id' '_chem_comp.id'
'_isotope_effect.comp_id' '_chem_comp.id'
'_isotope_label_pattern.comp_id' '_chem_comp.id'
'_mol_interaction_chem_shift.comp_id' '_chem_comp.id'
'_cs_anisotropy.comp_id' '_chem_comp.id'
'_chem_shielding_tensor.comp_id' '_chem_comp.id'
'_theoretical_chem_shift.comp_id' '_chem_comp.id'
'_rdc.comp_id_1' '_chem_comp.id'
'_rdc.comp_id_2' '_chem_comp.id'
'_dipolar_coupling.comp_id_1' '_chem_comp.id'
'_dipolar_coupling.comp_id_2' '_chem_comp.id'
'_spectral_density.comp_id' '_chem_comp.id'
'_other_data.comp_id' '_chem_comp.id'
'_h_exch_rate.comp_id' '_chem_comp.id'
'_h_exch_protection_factor.comp_id' '_chem_comp.id'
'_homonucl_noe.comp_id_1' '_chem_comp.id'
'_homonucl_noe.comp_id_2' '_chem_comp.id'
'_heteronucl_noe.comp_id_1' '_chem_comp.id'
'_heteronucl_noe.comp_id_2' '_chem_comp.id'
'_t1.comp_id' '_chem_comp.id'
'_t1rho.comp_id' '_chem_comp.id'
'_t2.comp_id' '_chem_comp.id'
'_dipole_dipole_relax.comp_id_1' '_chem_comp.id'
'_dipole_dipole_relax.comp_id_2' '_chem_comp.id'
'_cross_correlation_dd.dipole_1_comp_id_1' '_chem_comp.id'
'_cross_correlation_dd.dipole_1_comp_id_2' '_chem_comp.id'
'_cross_correlation_dd.dipole_2_comp_id_1' '_chem_comp.id'
'_cross_correlation_dd.dipole_2_comp_id_2' '_chem_comp.id'
'_cross_correlation_d_csa.dipole_comp_id_1' '_chem_comp.id'
'_cross_correlation_d_csa.dipole_comp_id_2' '_chem_comp.id'
'_cross_correlation_d_csa.csa_comp_id_1' '_chem_comp.id'
'_cross_correlation_d_csa.csa_comp_id_2' '_chem_comp.id'
'_order_param.comp_id' '_chem_comp.id'
'_ph_titr_result.atom_observed_comp_id' '_chem_comp.id'
'_ph_titr_result.atom_titrated_comp_id' '_chem_comp.id'
'_d_h_fractionation_factor.comp_id' '_chem_comp.id'
'_deduced_secd_struct_feature.comp_id' '_chem_comp.id'
'_deduced_h_bond.heavy_atom_comp_id_1' '_chem_comp.id'
'_deduced_h_bond.heavy_atom_comp_id_2' '_chem_comp.id'
'_deduced_h_bond.hydrogen_atom_comp_id' '_chem_comp.id'
'_atom_site.label_comp_id' '_chem_comp.id'
'_atom_site.pdb_comp_id' '_chem_comp.id'
'_terminal_residue.comp_id' '_chem_comp.id'
'_rep_conf.comp_id' '_chem_comp.id'
'_angular_order_param.comp_id' '_chem_comp.id'
'_tertiary_struct.comp_id' '_chem_comp.id'
'_bond_annotation.comp_id_1' '_chem_comp.id'
'_bond_annotation.comp_id_2' '_chem_comp.id'
'_structure_interaction.comp_id_1' '_chem_comp.id'
'_structure_interaction.comp_id_2' '_chem_comp.id'
'_dist_constraint.comp_id' '_chem_comp.id'
'_floating_chirality.comp_id_1' '_chem_comp.id'
'_floating_chirality.comp_id_2' '_chem_comp.id'
'_torsion_angle_constraint.comp_id_1' '_chem_comp.id'
'_torsion_angle_constraint.comp_id_2' '_chem_comp.id'
'_torsion_angle_constraint.comp_id_3' '_chem_comp.id'
'_torsion_angle_constraint.comp_id_4' '_chem_comp.id'
'_rdc_constraint.comp_id_1' '_chem_comp.id'
'_rdc_constraint.comp_id_2' '_chem_comp.id'
'_j_three_bond_constraint.comp_id_1' '_chem_comp.id'
'_j_three_bond_constraint.comp_id_2' '_chem_comp.id'
'_j_three_bond_constraint.comp_id_3' '_chem_comp.id'
'_j_three_bond_constraint.comp_id_4' '_chem_comp.id'
'_ca_cb_constraint.comp_id_1' '_chem_comp.id'
'_ca_cb_constraint.comp_id_2' '_chem_comp.id'
'_ca_cb_constraint.comp_id_3' '_chem_comp.id'
'_ca_cb_constraint.comp_id_4' '_chem_comp.id'
'_ca_cb_constraint.comp_id_5' '_chem_comp.id'
'_h_chem_shift_constraint.comp_id' '_chem_comp.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp.name
_item_description.description
;
A common name for the chemical component or monomer.
;
_item.name '_chem_comp.name'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
NADP
;
stop_
_item_type.code 'line'
save_
save__chem_comp.bmrb_code
_item_description.description
;
Twelve character code assigned to the chemical component by BMRB.
;
_item.name '_chem_comp.bmrb_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp.pdb_code
_item_description.description
;
Three character code assigned to the chemical component by the PDB.
;
_item.name '_chem_comp.pdb_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
ALA
;
stop_
_item_type.code 'code'
save_
save__chem_comp.inchi_code
_item_description.description
;
Enter the InCHi code that uniquely describes the chemical structure of
the compound.
;
_item.name '_chem_comp.inchi_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_comp.type
_item_description.description
;
Chemical components can be of two molecular types either a complete chemical
compound or a fragment of a complete chemical compound.
;
_item.name '_chem_comp.type'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
complete 'Full chemically complete molecule'
fragment 'Fragment of a chemical compound'
stop_
loop_
_item_examples.case
;
L-peptide linking
;
stop_
_item_type.code 'line'
save_
save__chem_comp.pdb_nstd_flag
_item_description.description
;
A flag defining the non-standard status of the chemical component. A value
of Y indicates that the compound is a standard molecule.
;
_item.name '_chem_comp.pdb_nstd_flag'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__chem_comp.std_deriv_one_letter_code
_item_description.description
;
The one letter code for the standard monomer from which the chemical component
is derived.
;
_item.name '_chem_comp.std_deriv_one_letter_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
Y
;
stop_
_item_type.code 'code'
save_
save__chem_comp.std_deriv_three_letter_code
_item_description.description
;
The three letter code for the standard monomer from which the chemical
component is derived.
;
_item.name '_chem_comp.std_deriv_three_letter_code'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
TYR
;
stop_
_item_type.code 'code'
save_
save__chem_comp.std_deriv_bmrb_code
_item_description.description
;
The BMRB code for the standard monomer from which the chemical component
is derived.
;
_item.name '_chem_comp.std_deriv_bmrb_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp.std_deriv_pdb_code
_item_description.description
;
The PDB code for the standard monomer from which the chemical component
is derived.
;
_item.name '_chem_comp.std_deriv_pdb_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp.std_deriv_chem_comp_name
_item_description.description
;
The name of the standard chemical component from which the chemical component
was derived.
;
_item.name '_chem_comp.std_deriv_chem_comp_name'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.formal_charge
_item_description.description
;
The formal electrical charge on the chemical compound.
;
_item.name '_chem_comp.formal_charge'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
2+
;
stop_
_item_type.code 'code'
save_
save__chem_comp.paramagnetic
_item_description.description
;
A boolean flag that defines the paramagnetic status of the chemical component.
;
_item.name '_chem_comp.paramagnetic'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
yes
;
stop_
_item_type.code 'yes_no'
save_
save__chem_comp.aromatic
_item_description.description
;
A boolean flag that defines the aromatic status of the chemical component.
;
_item.name '_chem_comp.aromatic'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_examples.case
;
no
;
stop_
_item_type.code 'yes_no'
save_
save__chem_comp.empirical_formula
_item_description.description
;
The empirical chemical formula for the chemical component.
;
_item.name '_chem_comp.empirical_formula'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.formula_weight
_item_description.description
;
Formula mass in daltons of the chemical component.
;
_item.name '_chem_comp.formula_weight'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__chem_comp.image_file_name
_item_description.description
;
Image file name
;
_item.name '_chem_comp.image_file_name'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
sucrose.jpg
;
stop_
_item_type.code 'line'
save_
save__chem_comp.image_file_format
_item_description.description
;
Type of image file format
;
_item.name '_chem_comp.image_file_format'
_item.category_id 'chem_comp'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
jpg; gif; tiff
;
stop_
_item_type.code 'line'
save_
save__chem_comp.topo_file_name
_item_description.description
;
Name of the file containing the information about the topology of the chemical
compound.
;
_item.name '_chem_comp.topo_file_name'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.topo_file_format
_item_description.description
;
The type of format for the file containing the topology information for
the chemical compound.
;
_item.name '_chem_comp.topo_file_format'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.struct_file_name
_item_description.description
;
Name of a structure file attached to the entry for a chemical component.
;
_item.name '_chem_comp.struct_file_name'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.struct_file_format
_item_description.description
;
File format for the attached structure file.
;
_item.name '_chem_comp.struct_file_format'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.stereochem_param_file_name
_item_description.description
;
Name of a file that contains the stereochemical parameters for the chemical
component.
;
_item.name '_chem_comp.stereochem_param_file_name'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.stereochem_param_file_format
_item_description.description
;
File format for the attached stereochemical parameter file.
;
_item.name '_chem_comp.stereochem_param_file_format'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.vendor
_item_description.description
;
Name of the company where the compound was purchased.
;
_item.name '_chem_comp.vendor'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
Sigma ?
Aldrich ?
Sigma/Aldrich ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.vendor_product_code
_item_description.description
;
The product code assigned to the compound by the vender where the compound
was purchased.
;
_item.name '_chem_comp.vendor_product_code'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp.details
_item_description.description
;
Additional text information that is relevant to the data in the current
saveframe or to a specific data item in the saveframe. This tag is often used
to include information that cannot be associated with a specific tag in the saveframe,
but is important.
;
_item.name '_chem_comp.details'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_comp.db_query_date
_item_description.description
;
Date when the last query was carried out to search for information on the
chemical compound.
;
_item.name '_chem_comp.db_query_date'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__chem_comp.db_last_query_revised_last_date
_item_description.description
;
Date the last time new information for the compound was found when a query
was executed.
;
_item.name '_chem_comp.db_last_query_revised_last_date'
_item.category_id 'chem_comp'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save_chem_comp_common_name
_category.description
;
Items in the chem_comp_common_name category provide a list of common names for a chemical component.
;
_category.id 'chem_comp_common_name'
loop_
_category_key.name
'_chem_comp_common_name.name'
'_chem_comp_common_name.entry_id'
'_chem_comp_common_name.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_common_name.name
_item_description.description
;
A synonym for the chemical component or monomer.
;
_item.name '_chem_comp_common_name.name'
_item.category_id 'chem_comp_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_common_name.type
_item_description.description
;
The type of name given to the compound (abbreviation$ etc.).
;
_item.name '_chem_comp_common_name.type'
_item.category_id 'chem_comp_common_name'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
abbreviation ?
name ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_common_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_common_name.entry_id'
_item.category_id 'chem_comp_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_common_name.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_common_name.comp_id'
_item.category_id 'chem_comp_common_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_systematic_name
_category.description
;
Items in the chem_comp_systematic_name category provide a list of systematic names for a chemical component and define the systematic naming systems.
;
_category.id 'chem_comp_systematic_name'
loop_
_category_key.name
'_chem_comp_systematic_name.naming_system'
'_chem_comp_systematic_name.entry_id'
'_chem_comp_systematic_name.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_systematic_name.name
_item_description.description
;
A name for the chemical compound that has been defined by an official body
or is derived from rules defined by an official organization recognized by the
scientific community.
;
_item.name '_chem_comp_systematic_name.name'
_item.category_id 'chem_comp_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_systematic_name.naming_system
_item_description.description
;
An official method of nomenclature or defined set of nomenclature for chemical
compounds recognized by the scientific community.
;
_item.name '_chem_comp_systematic_name.naming_system'
_item.category_id 'chem_comp_systematic_name'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
IUPAC ?
'CAS name' ?
'CAS registry number' ?
BMRB ?
'One letter code' ?
'Three letter code' ?
stop_
loop_
_item_examples.case
;
IUPAC
;
stop_
_item_type.code 'line'
save_
save__chem_comp_systematic_name.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_systematic_name.entry_id'
_item.category_id 'chem_comp_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_systematic_name.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_systematic_name.comp_id'
_item.category_id 'chem_comp_systematic_name'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_smiles
_category.description
;
Items in the chem_comp_SMILES category define a SMILES string for a chemical component and the type of SMILES string that is provided.
;
_category.id 'chem_comp_smiles'
loop_
_category_key.name
'_chem_comp_smiles.type'
'_chem_comp_smiles.string'
'_chem_comp_smiles.entry_id'
'_chem_comp_smiles.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_smiles.type
_item_description.description
;
The type of SMILES string provided is defined by this tag value.
;
_item.name '_chem_comp_smiles.type'
_item.category_id 'chem_comp_smiles'
_item.mandatory_code yes
loop_
_item_examples.case
;
canonical; isomeric; unique
;
stop_
_item_type.code 'line'
save_
save__chem_comp_smiles.string
_item_description.description
;
SMILES string for the chemical component.
;
_item.name '_chem_comp_smiles.string'
_item.category_id 'chem_comp_smiles'
_item.mandatory_code yes
loop_
_item_examples.case
;
C(C1C(C(C(C(O1)OC2(C(C(C(O2)CO)O)O)CO)O)O)O)O
;
stop_
_item_type.code 'text'
save_
save__chem_comp_smiles.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_smiles.entry_id'
_item.category_id 'chem_comp_smiles'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_smiles.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_smiles.comp_id'
_item.category_id 'chem_comp_smiles'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_keyword
_category.description
;
Items in the chem_comp_keyword category provide a list of keywords that describe a chemical component.
;
_category.id 'chem_comp_keyword'
loop_
_category_key.name
'_chem_comp_keyword.keyword'
'_chem_comp_keyword.entry_id'
'_chem_comp_keyword.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_keyword.keyword
_item_description.description
;
A keyword or brief phrase describing the chemical compound.
;
_item.name '_chem_comp_keyword.keyword'
_item.category_id 'chem_comp_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_keyword.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_keyword.entry_id'
_item.category_id 'chem_comp_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_keyword.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_keyword.comp_id'
_item.category_id 'chem_comp_keyword'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_characteristic
_category.description
;
Items in the characteristics category define specific physical characteristics for a chemical component and links to the source of the information.
;
_category.id 'characteristic'
loop_
_category_key.name
'_characteristic.id'
'_characteristic.entry_id'
'_characteristic.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__characteristic.id
_item_description.description
;
A value that uniquely identifies each characteristic provided in the list.
;
_item.name '_characteristic.id'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__characteristic.name
_item_description.description
;
Name for the reported characteristic of the chemical component.
;
_item.name '_characteristic.name'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
UV absorption maximum
;
stop_
_item_type.code 'line'
save_
save__characteristic.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_characteristic.atom_id'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__characteristic.chemical_group
_item_description.description
;
Chemical group that is responsible for the observed characteristic of the
chemical component.
;
_item.name '_characteristic.chemical_group'
_item.category_id 'characteristic'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__characteristic.val
_item_description.description
;
Value for the defined characteristic of the chemical component.
;
_item.name '_characteristic.val'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__characteristic.val_err
_item_description.description
;
Estimated error in the reported characteristic of the chemical component.
;
_item.name '_characteristic.val_err'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__characteristic.source
_item_description.description
;
Experimental source for the value reported for the chemical component.
;
_item.name '_characteristic.source'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__characteristic.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_characteristic.citation_id'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__characteristic.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_characteristic.citation_label'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__characteristic.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_characteristic.entry_id'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__characteristic.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_characteristic.comp_id'
_item.category_id 'characteristic'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_atom
_category.description
;
Items in the chem_comp_atom category define the atoms in a chemical component, the name for each atom, and characteristics of each atom in the chemical component.
;
_category.id 'chem_comp_atom'
loop_
_category_key.name
'_chem_comp_atom.atom_id'
'_chem_comp_atom.entry_id'
'_chem_comp_atom.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_atom.atom_id
_item_description.description
;
The value of _chem_comp_atom.atom_id must uniquely identify each atom in
each monomer in the CHEM_COMP_ATOM list.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_chem_comp_atom.atom_id' 'chem_comp_atom' yes
'_bond.atom_id_1' 'bond' yes
'_bond.atom_id_2' 'bond' yes
'_deleted_atom.atom_id' 'deleted_atom' yes
'_angle.atom_id_1' 'angle' yes
'_angle.atom_id_2' 'angle' yes
'_angle.atom_id_3' 'angle' yes
'_torsion_angle.atom_id_1' 'torsion_angle' yes
'_torsion_angle.atom_id_2' 'torsion_angle' yes
'_torsion_angle.atom_id_3' 'torsion_angle' yes
'_torsion_angle.atom_id_4' 'torsion_angle' yes
'_assembly_segment.atom_id' 'assembly_segment' yes
'_author_annotation.atom_id' 'author_annotation' yes
'_entity_bond.atom_id_1' 'entity_bond' yes
'_entity_bond.atom_id_2' 'entity_bond' yes
'_characteristic.atom_id' 'characteristic' yes
'_atom_nomenclature.atom_id' 'atom_nomenclature' yes
'_chem_comp_bond.atom_id_1' 'chem_comp_bond' yes
'_chem_comp_bond.atom_id_2' 'chem_comp_bond' yes
'_chem_comp_tor.atom_id_1' 'chem_comp_tor' yes
'_chem_comp_tor.atom_id_2' 'chem_comp_tor' yes
'_chem_comp_tor.atom_id_3' 'chem_comp_tor' yes
'_chem_comp_tor.atom_id_4' 'chem_comp_tor' yes
'_chem_comp_angle.atom_id_1' 'chem_comp_angle' yes
'_chem_comp_angle.atom_id_2' 'chem_comp_angle' yes
'_chem_comp_angle.atom_id_3' 'chem_comp_angle' yes
'_sample_component_atom_isotope.atom_id' 'sample_component_atom_isotope' yes
'_atom_chem_shift.atom_id' 'atom_chem_shift' yes
'_coupling_constant.atom_id_1' 'coupling_constant' yes
'_coupling_constant.atom_id_2' 'coupling_constant' yes
'_assigned_peak_chem_shift.atom_id' 'assigned_peak_chem_shift' yes
'_resonance_assignment.atom_id' 'resonance_assignment' yes
'_isotope_effect.atom_id' 'isotope_effect' yes
'_isotope_label_pattern.atom_id' 'isotope_label_pattern' yes
'_mol_interaction_chem_shift.atom_id' 'mol_interaction_chem_shift' yes
'_cs_anisotropy.atom_id' 'cs_anisotropy' yes
'_chem_shielding_tensor.atom_id' 'chem_shielding_tensor' yes
'_theoretical_chem_shift.atom_id' 'theoretical_chem_shift' yes
'_rdc.atom_id_1' 'rdc' yes
'_rdc.atom_id_2' 'rdc' yes
'_dipolar_coupling.atom_id_1' 'dipolar_coupling' yes
'_dipolar_coupling.atom_id_2' 'dipolar_coupling' yes
'_spectral_density.atom_id' 'spectral_density' yes
'_other_data.atom_id' 'other_data' yes
'_h_exch_rate.atom_id' 'h_exch_rate' yes
'_h_exch_protection_factor.atom_id' 'h_exch_protection_factor' yes
'_homonucl_noe.atom_id_1' 'homonucl_noe' yes
'_homonucl_noe.atom_id_2' 'homonucl_noe' yes
'_heteronucl_noe.atom_id_1' 'heteronucl_noe' yes
'_heteronucl_noe.atom_id_2' 'heteronucl_noe' yes
'_t1.atom_id' 't1' yes
'_t1rho.atom_id' 't1rho' yes
'_t2.atom_id' 't2' yes
'_dipole_dipole_relax.atom_id_1' 'dipole_dipole_relax' yes
'_dipole_dipole_relax.atom_id_2' 'dipole_dipole_relax' yes
'_cross_correlation_dd.dipole_1_atom_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_1_atom_id_2' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_atom_id_1' 'cross_correlation_dd' yes
'_cross_correlation_dd.dipole_2_atom_id_2' 'cross_correlation_dd' yes
'_cross_correlation_d_csa.dipole_atom_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.dipole_atom_id_2' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_atom_id_1' 'cross_correlation_d_csa' yes
'_cross_correlation_d_csa.csa_atom_id_2' 'cross_correlation_d_csa' yes
'_order_param.atom_id' 'order_param' yes
'_ph_titr_result.atom_observed_atom_id' 'ph_titr_result' yes
'_ph_titr_result.atom_titrated_atom_id' 'ph_titr_result' yes
'_d_h_fractionation_factor.atom_id' 'd_h_fractionation_factor' yes
'_deduced_secd_struct_feature.atom_id' 'deduced_secd_struct_feature' yes
'_deduced_h_bond.donor_atom_id' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_atom_id_1' 'deduced_h_bond' yes
'_deduced_h_bond.heavy_atom_atom_id_2' 'deduced_h_bond' yes
'_deduced_h_bond.hydrogen_atom_id' 'deduced_h_bond' yes
'_atom_site.label_atom_id' 'atom_site' yes
'_rep_conf.atom_id' 'rep_conf' yes
'_tertiary_struct.atom_id' 'tertiary_struct' yes
'_bond_annotation.atom_id_1' 'bond_annotation' yes
'_bond_annotation.atom_id_2' 'bond_annotation' yes
'_structure_interaction.atom_id_1' 'structure_interaction' yes
'_structure_interaction.atom_id_2' 'structure_interaction' yes
'_dist_constraint.atom_id' 'dist_constraint' yes
'_floating_chirality.atom_id_1' 'floating_chirality' yes
'_floating_chirality.atom_id_2' 'floating_chirality' yes
'_torsion_angle_constraint.atom_id_1' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.atom_id_2' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.atom_id_3' 'torsion_angle_constraint' yes
'_torsion_angle_constraint.atom_id_4' 'torsion_angle_constraint' yes
'_rdc_constraint.atom_id_1' 'rdc_constraint' yes
'_rdc_constraint.atom_id_2' 'rdc_constraint' yes
'_j_three_bond_constraint.atom_id_1' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.atom_id_2' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.atom_id_3' 'j_three_bond_constraint' yes
'_j_three_bond_constraint.atom_id_4' 'j_three_bond_constraint' yes
'_ca_cb_constraint.atom_id_1' 'ca_cb_constraint' yes
'_ca_cb_constraint.atom_id_2' 'ca_cb_constraint' yes
'_ca_cb_constraint.atom_id_3' 'ca_cb_constraint' yes
'_ca_cb_constraint.atom_id_4' 'ca_cb_constraint' yes
'_ca_cb_constraint.atom_id_5' 'ca_cb_constraint' yes
'_h_chem_shift_constraint.atom_id' 'h_chem_shift_constraint' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_bond.atom_id_1' '_chem_comp_atom.atom_id'
'_bond.atom_id_2' '_chem_comp_atom.atom_id'
'_deleted_atom.atom_id' '_chem_comp_atom.atom_id'
'_angle.atom_id_1' '_chem_comp_atom.atom_id'
'_angle.atom_id_2' '_chem_comp_atom.atom_id'
'_angle.atom_id_3' '_chem_comp_atom.atom_id'
'_torsion_angle.atom_id_1' '_chem_comp_atom.atom_id'
'_torsion_angle.atom_id_2' '_chem_comp_atom.atom_id'
'_torsion_angle.atom_id_3' '_chem_comp_atom.atom_id'
'_torsion_angle.atom_id_4' '_chem_comp_atom.atom_id'
'_assembly_segment.atom_id' '_chem_comp_atom.atom_id'
'_author_annotation.atom_id' '_chem_comp_atom.atom_id'
'_entity_bond.atom_id_1' '_chem_comp_atom.atom_id'
'_entity_bond.atom_id_2' '_chem_comp_atom.atom_id'
'_characteristic.atom_id' '_chem_comp_atom.atom_id'
'_atom_nomenclature.atom_id' '_chem_comp_atom.atom_id'
'_chem_comp_bond.atom_id_1' '_chem_comp_atom.atom_id'
'_chem_comp_bond.atom_id_2' '_chem_comp_atom.atom_id'
'_chem_comp_tor.atom_id_1' '_chem_comp_atom.atom_id'
'_chem_comp_tor.atom_id_2' '_chem_comp_atom.atom_id'
'_chem_comp_tor.atom_id_3' '_chem_comp_atom.atom_id'
'_chem_comp_tor.atom_id_4' '_chem_comp_atom.atom_id'
'_chem_comp_angle.atom_id_1' '_chem_comp_atom.atom_id'
'_chem_comp_angle.atom_id_2' '_chem_comp_atom.atom_id'
'_chem_comp_angle.atom_id_3' '_chem_comp_atom.atom_id'
'_sample_component_atom_isotope.atom_id' '_chem_comp_atom.atom_id'
'_atom_chem_shift.atom_id' '_chem_comp_atom.atom_id'
'_coupling_constant.atom_id_1' '_chem_comp_atom.atom_id'
'_coupling_constant.atom_id_2' '_chem_comp_atom.atom_id'
'_assigned_peak_chem_shift.atom_id' '_chem_comp_atom.atom_id'
'_resonance_assignment.atom_id' '_chem_comp_atom.atom_id'
'_isotope_effect.atom_id' '_chem_comp_atom.atom_id'
'_isotope_label_pattern.atom_id' '_chem_comp_atom.atom_id'
'_mol_interaction_chem_shift.atom_id' '_chem_comp_atom.atom_id'
'_cs_anisotropy.atom_id' '_chem_comp_atom.atom_id'
'_chem_shielding_tensor.atom_id' '_chem_comp_atom.atom_id'
'_theoretical_chem_shift.atom_id' '_chem_comp_atom.atom_id'
'_rdc.atom_id_1' '_chem_comp_atom.atom_id'
'_rdc.atom_id_2' '_chem_comp_atom.atom_id'
'_dipolar_coupling.atom_id_1' '_chem_comp_atom.atom_id'
'_dipolar_coupling.atom_id_2' '_chem_comp_atom.atom_id'
'_spectral_density.atom_id' '_chem_comp_atom.atom_id'
'_other_data.atom_id' '_chem_comp_atom.atom_id'
'_h_exch_rate.atom_id' '_chem_comp_atom.atom_id'
'_h_exch_protection_factor.atom_id' '_chem_comp_atom.atom_id'
'_homonucl_noe.atom_id_1' '_chem_comp_atom.atom_id'
'_homonucl_noe.atom_id_2' '_chem_comp_atom.atom_id'
'_heteronucl_noe.atom_id_1' '_chem_comp_atom.atom_id'
'_heteronucl_noe.atom_id_2' '_chem_comp_atom.atom_id'
'_t1.atom_id' '_chem_comp_atom.atom_id'
'_t1rho.atom_id' '_chem_comp_atom.atom_id'
'_t2.atom_id' '_chem_comp_atom.atom_id'
'_dipole_dipole_relax.atom_id_1' '_chem_comp_atom.atom_id'
'_dipole_dipole_relax.atom_id_2' '_chem_comp_atom.atom_id'
'_cross_correlation_dd.dipole_1_atom_id_1' '_chem_comp_atom.atom_id'
'_cross_correlation_dd.dipole_1_atom_id_2' '_chem_comp_atom.atom_id'
'_cross_correlation_dd.dipole_2_atom_id_1' '_chem_comp_atom.atom_id'
'_cross_correlation_dd.dipole_2_atom_id_2' '_chem_comp_atom.atom_id'
'_cross_correlation_d_csa.dipole_atom_id_1' '_chem_comp_atom.atom_id'
'_cross_correlation_d_csa.dipole_atom_id_2' '_chem_comp_atom.atom_id'
'_cross_correlation_d_csa.csa_atom_id_1' '_chem_comp_atom.atom_id'
'_cross_correlation_d_csa.csa_atom_id_2' '_chem_comp_atom.atom_id'
'_order_param.atom_id' '_chem_comp_atom.atom_id'
'_ph_titr_result.atom_observed_atom_id' '_chem_comp_atom.atom_id'
'_ph_titr_result.atom_titrated_atom_id' '_chem_comp_atom.atom_id'
'_d_h_fractionation_factor.atom_id' '_chem_comp_atom.atom_id'
'_deduced_secd_struct_feature.atom_id' '_chem_comp_atom.atom_id'
'_deduced_h_bond.donor_atom_id' '_chem_comp_atom.atom_id'
'_deduced_h_bond.heavy_atom_atom_id_1' '_chem_comp_atom.atom_id'
'_deduced_h_bond.heavy_atom_atom_id_2' '_chem_comp_atom.atom_id'
'_deduced_h_bond.hydrogen_atom_id' '_chem_comp_atom.atom_id'
'_atom_site.label_atom_id' '_chem_comp_atom.atom_id'
'_rep_conf.atom_id' '_chem_comp_atom.atom_id'
'_tertiary_struct.atom_id' '_chem_comp_atom.atom_id'
'_bond_annotation.atom_id_1' '_chem_comp_atom.atom_id'
'_bond_annotation.atom_id_2' '_chem_comp_atom.atom_id'
'_structure_interaction.atom_id_1' '_chem_comp_atom.atom_id'
'_structure_interaction.atom_id_2' '_chem_comp_atom.atom_id'
'_dist_constraint.atom_id' '_chem_comp_atom.atom_id'
'_floating_chirality.atom_id_1' '_chem_comp_atom.atom_id'
'_floating_chirality.atom_id_2' '_chem_comp_atom.atom_id'
'_torsion_angle_constraint.atom_id_1' '_chem_comp_atom.atom_id'
'_torsion_angle_constraint.atom_id_2' '_chem_comp_atom.atom_id'
'_torsion_angle_constraint.atom_id_3' '_chem_comp_atom.atom_id'
'_torsion_angle_constraint.atom_id_4' '_chem_comp_atom.atom_id'
'_rdc_constraint.atom_id_1' '_chem_comp_atom.atom_id'
'_rdc_constraint.atom_id_2' '_chem_comp_atom.atom_id'
'_j_three_bond_constraint.atom_id_1' '_chem_comp_atom.atom_id'
'_j_three_bond_constraint.atom_id_2' '_chem_comp_atom.atom_id'
'_j_three_bond_constraint.atom_id_3' '_chem_comp_atom.atom_id'
'_j_three_bond_constraint.atom_id_4' '_chem_comp_atom.atom_id'
'_ca_cb_constraint.atom_id_1' '_chem_comp_atom.atom_id'
'_ca_cb_constraint.atom_id_2' '_chem_comp_atom.atom_id'
'_ca_cb_constraint.atom_id_3' '_chem_comp_atom.atom_id'
'_ca_cb_constraint.atom_id_4' '_chem_comp_atom.atom_id'
'_ca_cb_constraint.atom_id_5' '_chem_comp_atom.atom_id'
'_h_chem_shift_constraint.atom_id' '_chem_comp_atom.atom_id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_atom.pdb_atom_id
_item_description.description
;
Name given to the atom by the PDB.
;
_item.name '_chem_comp_atom.pdb_atom_id'
_item.category_id 'chem_comp_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_atom.auth_atom_id
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_chem_comp_atom.auth_atom_id'
_item.category_id 'chem_comp_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__chem_comp_atom.type_symbol
_item_description.description
;
The IUPAC symbol used for the atom (H; C; P; O; S).
;
_item.name '_chem_comp_atom.type_symbol'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_atom.isotope_number
_item_description.description
;
Isotope number for the atom.
;
_item.name '_chem_comp_atom.isotope_number'
_item.category_id 'chem_comp_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_atom.chirality
_item_description.description
;
Chirality designation for the atom.
;
_item.name '_chem_comp_atom.chirality'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
R;S
;
stop_
_item_type.code 'code'
save_
save__chem_comp_atom.charge
_item_description.description
;
The net integer charge assigned to this atom. This is the formal charge
assignment normally found in chemical diagrams.
;
_item.name '_chem_comp_atom.charge'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_atom.oxidation_number
_item_description.description
;
The oxidation number for the atom.
;
_item.name '_chem_comp_atom.oxidation_number'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_atom.unpaired_electrons
_item_description.description
;
The number of unpaired electrons on the atom.
;
_item.name '_chem_comp_atom.unpaired_electrons'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yes_no'
save_
save__chem_comp_atom.ionizable
_item_description.description
;
A code indicating the potential for the atom to be in an ionized state.
;
_item.name '_chem_comp_atom.ionizable'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yes_no'
save_
save__chem_comp_atom.details
_item_description.description
;
Text providing additional information about the atom.
;
_item.name '_chem_comp_atom.details'
_item.category_id 'chem_comp_atom'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_comp_atom.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_atom.entry_id'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_atom.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_atom.comp_id'
_item.category_id 'chem_comp_atom'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_atom_nomenclature
_category.description
;
Items in the atom_nomenclature category define alternative atom nomenclature for the atoms in a chemical compound.
;
_category.id 'atom_nomenclature'
loop_
_category_key.name
'_atom_nomenclature.atom_id'
'_atom_nomenclature.naming_system'
'_atom_nomenclature.entry_id'
'_atom_nomenclature.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__atom_nomenclature.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_atom_nomenclature.atom_id'
_item.category_id 'atom_nomenclature'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__atom_nomenclature.atom_name
_item_description.description
;
Alternate atom name defined by an organization or official body.
;
_item.name '_atom_nomenclature.atom_name'
_item.category_id 'atom_nomenclature'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__atom_nomenclature.naming_system
_item_description.description
;
The name of the systematic atom nomenclature.
;
_item.name '_atom_nomenclature.naming_system'
_item.category_id 'atom_nomenclature'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__atom_nomenclature.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_atom_nomenclature.entry_id'
_item.category_id 'atom_nomenclature'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom_nomenclature.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_atom_nomenclature.comp_id'
_item.category_id 'atom_nomenclature'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_bond
_category.description
;
Items in the chem_comp_bond category define the chemical bonds in a chemical component.
;
_category.id 'chem_comp_bond'
loop_
_category_key.name
'_chem_comp_bond.id'
'_chem_comp_bond.entry_id'
'_chem_comp_bond.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_bond.id
_item_description.description
;
The value of _chem_comp_bond.id must uniquely identify a record in the
Chem_comp_bond list.
;
_item.name '_chem_comp_bond.id'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_bond.type
_item_description.description
;
A common chemical bond descriptive name.
;
_item.name '_chem_comp_bond.type'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_bond.value_order
_item_description.description
;
The value that should be taken as the target for the chemical bond associated
with the specified atoms, expressed as a bond order.
;
_item.name '_chem_comp_bond.value_order'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_bond.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_bond.atom_id_1'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_bond.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_bond.atom_id_2'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_bond.pdb_atom_id_1
_item_description.description
;
The name used by the PDB for the first atom in the bond.
;
_item.name '_chem_comp_bond.pdb_atom_id_1'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_bond.pdb_atom_id_2
_item_description.description
;
the name used by the PDB for the second atom in the bond.
;
_item.name '_chem_comp_bond.pdb_atom_id_2'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_bond.details
_item_description.description
;
A text description of the bond.
;
_item.name '_chem_comp_bond.details'
_item.category_id 'chem_comp_bond'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_comp_bond.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_bond.entry_id'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_bond.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_bond.comp_id'
_item.category_id 'chem_comp_bond'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_tor
_category.description
;
Items in the chem_comp_tor category define the torsion angles in a chemical component.
;
_category.id 'chem_comp_tor'
loop_
_category_key.name
'_chem_comp_tor.id'
'_chem_comp_tor.entry_id'
'_chem_comp_tor.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_tor.id
_item_description.description
;
The value of _chem_comp_tor.id must uniquely identify a record in the Chem_comp_tor
list.
;
_item.name '_chem_comp_tor.id'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_tor.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_tor.atom_id_1'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_tor.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_tor.atom_id_2'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_tor.atom_id_3
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_tor.atom_id_3'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_tor.atom_id_4
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_tor.atom_id_4'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_tor.details
_item_description.description
;
A text description of the torsion angle.
;
_item.name '_chem_comp_tor.details'
_item.category_id 'chem_comp_tor'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_comp_tor.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_tor.entry_id'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_tor.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_tor.comp_id'
_item.category_id 'chem_comp_tor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_angle
_category.description
;
Items in the chem_comp_angle category define the two bond angles in a chemical component.
;
_category.id 'chem_comp_angle'
loop_
_category_key.name
'_chem_comp_angle.id'
'_chem_comp_angle.entry_id'
'_chem_comp_angle.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_angle.id
_item_description.description
;
The value of _chem_comp_angle.id must uniquely identify a record in the
Chem_comp_tor list.
;
_item.name '_chem_comp_angle.id'
_item.category_id 'chem_comp_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_angle.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_angle.atom_id_1'
_item.category_id 'chem_comp_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_angle.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_angle.atom_id_2'
_item.category_id 'chem_comp_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_angle.atom_id_3
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_chem_comp_angle.atom_id_3'
_item.category_id 'chem_comp_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__chem_comp_angle.details
_item_description.description
;
Text providing additional information regarding the angle formed by the
three atoms.
;
_item.name '_chem_comp_angle.details'
_item.category_id 'chem_comp_angle'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_comp_angle.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_angle.entry_id'
_item.category_id 'chem_comp_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_angle.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_angle.comp_id'
_item.category_id 'chem_comp_angle'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_db_link
_category.description
;
Items in the chem_comp_db_link category provide the names of databases and accession numbers for entries in the databases that are related to a chemical component and information about the linked entry.
;
_category.id 'chem_comp_db_link'
loop_
_category_key.name
'_chem_comp_db_link.database_code'
'_chem_comp_db_link.accession_code'
'_chem_comp_db_link.entry_id'
'_chem_comp_db_link.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_db_link.author_supplied
_item_description.description
;
A code indicating if the database link was provided by the author of the
deposition (yes) or by another source (no).
;
_item.name '_chem_comp_db_link.author_supplied'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yes_no'
save_
save__chem_comp_db_link.database_code
_item_description.description
;
Enter the abbreviation or acronym for the database site for the entry for
the chemical compound.
;
_item.name '_chem_comp_db_link.database_code'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
PDB
;
stop_
_item_type.code 'line'
save_
save__chem_comp_db_link.accession_code
_item_description.description
;
Enter the accession code for the chemical compound from the database listed.
;
_item.name '_chem_comp_db_link.accession_code'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
HEM
;
stop_
_item_type.code 'line'
save_
save__chem_comp_db_link.entry_mol_code
_item_description.description
;
Code used by the database for the molecule.
;
_item.name '_chem_comp_db_link.entry_mol_code'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_db_link.entry_mol_name
_item_description.description
;
Name given by the database to the molecule.
;
_item.name '_chem_comp_db_link.entry_mol_name'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_comp_db_link.entry_experimental_method
_item_description.description
;
If appropriate, list the experimental technique (NMR, mass spectrometry,
X-ray crystallography) that was used to collect the data in the entry at the database
listed.
;
_item.name '_chem_comp_db_link.entry_experimental_method'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
NMR
;
stop_
_item_type.code 'line'
save_
save__chem_comp_db_link.entry_relation_type
_item_description.description
;
Describe the relationship between the entry in the listed database and
this BMRB entry. This might include the physical properties of the compound or
the position of the compound in a metabolic pathway, for example.
;
_item.name '_chem_comp_db_link.entry_relation_type'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
Physical properties of the compound
;
stop_
_item_type.code 'line'
save_
save__chem_comp_db_link.entry_details
_item_description.description
;
If appropriate, additional text information regarding the entry in the
listed database can be entered in this field.
;
_item.name '_chem_comp_db_link.entry_details'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code no
loop_
_item_examples.case
;
A variety of physical parameters are available from this site$ including pKa values and UV absorption data for protoporphyrin IX.
;
stop_
_item_type.code 'text'
save_
save__chem_comp_db_link.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_db_link.entry_id'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_db_link.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_db_link.comp_id'
_item.category_id 'chem_comp_db_link'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_chem_comp_citation
_category.description
;
Items in the chem_comp_citation category provide pointers to the citations category where information defining citations that describe a chemical component can be found.
;
_category.id 'chem_comp_citation'
loop_
_category_key.name
'_chem_comp_citation.citation_id'
'_chem_comp_citation.entry_id'
'_chem_comp_citation.comp_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_comp'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_comp_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_chem_comp_citation.citation_id'
_item.category_id 'chem_comp_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_comp_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_chem_comp_citation.citation_label'
_item.category_id 'chem_comp_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
citation 1
;
stop_
_item_type.code 'label'
save_
save__chem_comp_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_comp_citation.entry_id'
_item.category_id 'chem_comp_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_comp_citation.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_chem_comp_citation.comp_id'
_item.category_id 'chem_comp_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save_sample
_category.description
;
Items in the sample category describe the characteristics of the samples used to collect experimental data.
;
_category.id 'sample'
_category.mandatory_code yes
loop_
_category_key.name
'_sample.entry_id'
'_sample.id'
stop_
loop_
_category_group.id
'inclusive_group'
'sample'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_sample.sf_category'
_item.category_id 'sample'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample.sf_framecode
_item_description.description
;
A value that uniquely identifies this sample from the other samples listed
in the entry.
;
_item.name '_sample.sf_framecode'
_item.category_id 'sample'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'code'
save_
save__sample.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample.entry_id'
_item.category_id 'sample'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample.id
_item_description.description
;
A value that uniquely identifies the sample described from the other samples
listed in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_sample.id' 'sample' yes
'_sample_component.sample_id' 'sample_component' yes
'_sample_component_atom_isotope.sample_id' 'sample_component_atom_isotope' yes
'_sample_citation.sample_id' 'sample_citation' yes
'_entity_purity.sample_id' 'entity_purity' yes
'_experiment.sample_id' 'experiment' yes
'_chem_shift_experiment.sample_id' 'chem_shift_experiment' yes
'_coupling_constant_experiment.sample_id' 'coupling_constant_experiment' yes
'_spectral_peak_list.sample_id' 'spectral_peak_list' yes
'_isotope_effect_experiment.sample_id' 'isotope_effect_experiment' yes
'_isotope_effect.label_sample_id_1' 'isotope_effect' yes
'_isotope_effect.label_sample_id_2' 'isotope_effect' yes
'_mol_interaction_diff_experiment.sample_id' 'mol_interaction_diff_experiment' yes
'_cs_anisotropy_experiment.sample_id' 'cs_anisotropy_experiment' yes
'_rdc_experiment.sample_id' 'rdc_experiment' yes
'_dipolar_coupling_experiment.sample_id' 'dipolar_coupling_experiment' yes
'_spectral_density_experiment.sample_id' 'spectral_density_experiment' yes
'_other_data_experiment.sample_id' 'other_data_experiment' yes
'_h_exch_rate_experiment.sample_id' 'h_exch_rate_experiment' yes
'_h_exch_protection_fact_experiment.sample_id' 'h_exch_protection_fact_experiment' yes
'_homonucl_noe_experiment.sample_id' 'homonucl_noe_experiment' yes
'_heteronucl_noe_experiment.sample_id' 'heteronucl_noe_experiment' yes
'_heteronucl_t1_experiment.sample_id' 'heteronucl_t1_experiment' yes
'_heteronucl_t1rho_experiment.sample_id' 'heteronucl_t1rho_experiment' yes
'_heteronucl_t2_experiment.sample_id' 'heteronucl_t2_experiment' yes
'_dipole_dipole_relax_experiment.sample_id' 'dipole_dipole_relax_experiment' yes
'_cross_correlation_dd_experiment.sample_id' 'cross_correlation_dd_experiment' yes
'_cross_correlation_d_csa_experiment.sample_id' 'cross_correlation_d_csa_experiment' yes
'_order_parameter_experiment.sample_id' 'order_parameter_experiment' yes
'_ph_titration_experiment.sample_id' 'ph_titration_experiment' yes
'_d_h_fract_factor_experiment.sample_id' 'd_h_fract_factor_experiment' yes
'_deduced_secd_struct_experiment.sample_id' 'deduced_secd_struct_experiment' yes
'_deduced_h_bond_experiment.sample_id' 'deduced_h_bond_experiment' yes
'_conformer_family_coord_set_expt.sample_id' 'conformer_family_coord_set_expt' yes
'_distance_constraint_expt.sample_id' 'distance_constraint_expt' yes
'_torsion_angle_constraints_expt.sample_id' 'torsion_angle_constraints_expt' yes
'_rdc_constraint_expt.sample_id' 'rdc_constraint_expt' yes
'_j_three_bond_constraint_expt.sample_id' 'j_three_bond_constraint_expt' yes
'_ca_cb_constraint_expt.sample_id' 'ca_cb_constraint_expt' yes
'_h_chem_shift_constraint_expt.sample_id' 'h_chem_shift_constraint_expt' yes
'_other_constraint_expt.sample_id' 'other_constraint_expt' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_sample_component.sample_id' '_sample.id'
'_sample_component_atom_isotope.sample_id' '_sample.id'
'_sample_citation.sample_id' '_sample.id'
'_entity_purity.sample_id' '_sample.id'
'_experiment.sample_id' '_sample.id'
'_chem_shift_experiment.sample_id' '_sample.id'
'_coupling_constant_experiment.sample_id' '_sample.id'
'_spectral_peak_list.sample_id' '_sample.id'
'_isotope_effect_experiment.sample_id' '_sample.id'
'_isotope_effect.label_sample_id_1' '_sample.id'
'_isotope_effect.label_sample_id_2' '_sample.id'
'_mol_interaction_diff_experiment.sample_id' '_sample.id'
'_cs_anisotropy_experiment.sample_id' '_sample.id'
'_rdc_experiment.sample_id' '_sample.id'
'_dipolar_coupling_experiment.sample_id' '_sample.id'
'_spectral_density_experiment.sample_id' '_sample.id'
'_other_data_experiment.sample_id' '_sample.id'
'_h_exch_rate_experiment.sample_id' '_sample.id'
'_h_exch_protection_fact_experiment.sample_id' '_sample.id'
'_homonucl_noe_experiment.sample_id' '_sample.id'
'_heteronucl_noe_experiment.sample_id' '_sample.id'
'_heteronucl_t1_experiment.sample_id' '_sample.id'
'_heteronucl_t1rho_experiment.sample_id' '_sample.id'
'_heteronucl_t2_experiment.sample_id' '_sample.id'
'_dipole_dipole_relax_experiment.sample_id' '_sample.id'
'_cross_correlation_dd_experiment.sample_id' '_sample.id'
'_cross_correlation_d_csa_experiment.sample_id' '_sample.id'
'_order_parameter_experiment.sample_id' '_sample.id'
'_ph_titration_experiment.sample_id' '_sample.id'
'_d_h_fract_factor_experiment.sample_id' '_sample.id'
'_deduced_secd_struct_experiment.sample_id' '_sample.id'
'_deduced_h_bond_experiment.sample_id' '_sample.id'
'_conformer_family_coord_set_expt.sample_id' '_sample.id'
'_distance_constraint_expt.sample_id' '_sample.id'
'_torsion_angle_constraints_expt.sample_id' '_sample.id'
'_rdc_constraint_expt.sample_id' '_sample.id'
'_j_three_bond_constraint_expt.sample_id' '_sample.id'
'_ca_cb_constraint_expt.sample_id' '_sample.id'
'_h_chem_shift_constraint_expt.sample_id' '_sample.id'
'_other_constraint_expt.sample_id' '_sample.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample.type
_item_description.description
;
A descriptive term for the sample that defines the general physical properties
of the sample.
;
_item.name '_sample.type'
_item.category_id 'sample'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
solution ?
solid ?
bicelle ?
emulsion ?
fiber ?
'filamentous virus' ?
gel ?
liposome ?
membrane ?
micelle ?
'lyophilized powder' ?
'oriented membrane film' ?
'fibrous protein' ?
'polycrystalline powder' ?
'reverse micelle' ?
'single crystal' ?
stop_
loop_
_item_examples.case
;
solution
;
stop_
_item_default.value 'solution'
_item_type.code 'line'
save_
save__sample.sub_type
_item_description.description
;
Solid and solution NMR samples of different types are often used. Please
select the specific type of sample used.
;
_item.name '_sample.sub_type'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
polycrystalline
;
stop_
_item_type.code 'line'
save_
save__sample.details
_item_description.description
;
Describe the sample. Note any atypical components or conditions and discuss
their importance.
;
_item.name '_sample.details'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
The added glycerol was used to raise the viscosity of the solution to 1.05 poisson.
;
stop_
_item_type.code 'text'
save_
save__sample.aggregate_sample_number
_item_description.description
;
Total number of samples represented by the concentration range reported
in category _Sample_component.
;
_item.name '_sample.aggregate_sample_number'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
3
;
stop_
_item_default.value '1'
_item_type.code 'int'
save_
save__sample.solvent_system
_item_description.description
;
The solvent components of the sample.
;
_item.name '_sample.solvent_system'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'90% H2O/10% D2O' ?
'95% H2O/5% D2O' ?
'100% D2O' ?
acetone ?
chloroform ?
DMSO ?
ethanol/water ?
methanol ?
stop_
loop_
_item_examples.case
;
95% H2O/5% H2O
;
stop_
_item_type.code 'line'
save_
save__sample.preparation_date
_item_description.description
;
Date the sample was prepared.
;
_item.name '_sample.preparation_date'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__sample.preparation_expiration_date
_item_description.description
;
Date after which the sample should not be used.
;
_item.name '_sample.preparation_expiration_date'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yyyy-mm-dd'
save_
save__sample.polycrystallization_protocol
_item_description.description
;
Protocol used for preparing polycrystalline samples.
;
_item.name '_sample.polycrystallization_protocol'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__sample.single_crystal_protocol
_item_description.description
;
Text protocol used to prepare single crystals.
;
_item.name '_sample.single_crystal_protocol'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__sample.crystal_grow_apparatus
_item_description.description
;
Apparatus used to grow the crystals
;
_item.name '_sample.crystal_grow_apparatus'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample.crystal_grow_atmosphere
_item_description.description
;
Atmosphere used to grow the crystals.
;
_item.name '_sample.crystal_grow_atmosphere'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample.crystal_grow_details
_item_description.description
;
Text providing additional information regarding the methods used to grow
crystals.
;
_item.name '_sample.crystal_grow_details'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__sample.crystal_grow_method
_item_description.description
;
Name for the method used to grow the crystals.
;
_item.name '_sample.crystal_grow_method'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__sample.crystal_grow_method_cit_id
_item_description.description
;
Pointer to '_Citation.ID' The citation referenced provides a description
of the method used to grow the crystals.
;
_item.name '_sample.crystal_grow_method_cit_id'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample.crystal_grow_ph
_item_description.description
;
The pH used to grow the crystals$ if a specific value was used.
;
_item.name '_sample.crystal_grow_ph'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__sample.crystal_grow_ph_range
_item_description.description
;
The pH range over which the crystals were grown, where a single pH value
was not used or known.
;
_item.name '_sample.crystal_grow_ph_range'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample.crystal_grow_pressure
_item_description.description
;
Pressure under which the crystals were grown.
;
_item.name '_sample.crystal_grow_pressure'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
ambient
;
stop_
_item_type.code 'float'
save_
save__sample.crystal_grow_pressure_esd
_item_description.description
;
Estemated error in the pressure value used to grow the crystals.
;
_item.name '_sample.crystal_grow_pressure_esd'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__sample.crystal_grow_seeding
_item_description.description
;
Code defining the type of seeding used to initiate the growth of the crystals.
;
_item.name '_sample.crystal_grow_seeding'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample.crystal_grow_seeding_cit_id
_item_description.description
;
Pointer to '_Citation.ID' The citation referenced provides a description
of the method used to seed the crystallization.
;
_item.name '_sample.crystal_grow_seeding_cit_id'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample.crystal_grow_temp
_item_description.description
;
Temperature used to grw the crystals.
;
_item.name '_sample.crystal_grow_temp'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__sample.crystal_grow_temp_details
_item_description.description
;
Text providing additional information regarding the temperature used to
grow the crystals.
;
_item.name '_sample.crystal_grow_temp_details'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__sample.crystal_grow_temp_esd
_item_description.description
;
Estimated error in the reported temperature value used to grow the crystals.
;
_item.name '_sample.crystal_grow_temp_esd'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__sample.crystal_grow_time
_item_description.description
;
The time required to grow the crystals.
;
_item.name '_sample.crystal_grow_time'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__sample.oriented_sample_prep_protocol
_item_description.description
;
Protocol used to prepare oriented crystal samples.
;
_item.name '_sample.oriented_sample_prep_protocol'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__sample.lyophilization_cryo_protectant
_item_description.description
;
Chemical used to protect the sample during lyophilization.
;
_item.name '_sample.lyophilization_cryo_protectant'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample.storage_protocol
_item_description.description
;
Protocol used for storing sample.
;
_item.name '_sample.storage_protocol'
_item.category_id 'sample'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_sample_component
_category.description
;
Items in the sample_component category define the components of a sample, their concentration in the sample, and the isotopic labeling for the component.
;
_category.id 'sample_component'
_category.mandatory_code yes
loop_
_category_key.name
'_sample_component.id'
'_sample_component.entry_id'
'_sample_component.sample_id'
stop_
loop_
_category_group.id
'inclusive_group'
'sample'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample_component.id
_item_description.description
;
A value that uniquely identifies each component of the sample in the component
list.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_sample_component.id' 'sample_component' yes
'_sample_component_atom_isotope.sample_component_id' 'sample_component_atom_isotope' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_sample_component_atom_isotope.sample_component_id' '_sample_component.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component.mol_common_name
_item_description.description
;
Enter the common name for a component of the sample. Include molecules
under study as well as buffers and salts.
;
_item.name '_sample_component.mol_common_name'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
D2O ?
DSS ?
DTT ?
H2O ?
PMSF ?
'potassium chloride' ?
'potassium phosphate' ?
'sodium azide' ?
'sodium chloride' ?
'sodium phosphate' ?
TRIS ?
TSP ?
'acetic acid' ?
'AEBSF protease inhibitor' ?
'ammonium acetate' ?
'ammonium citrate' ?
'ammonium sulfate' ?
APMSF ?
ascorbate ?
beta-mercaptoethanol ?
cacodylate ?
CHAPS ?
chloroform ?
DHPC ?
DMPC ?
DMPG ?
DMSO ?
DPC ?
EDTA ?
ethanol ?
formate ?
glycerol ?
glycine ?
HEPES ?
imidazole ?
MES ?
methanol ?
pefabloc ?
'Pf1 phage' ?
PIPES ?
'potassium cyanide' ?
SDS ?
'sodium acetate' ?
'sodium dithionite' ?
'sodium sulfate' ?
'succinic acid' ?
t-butanol ?
TCEP ?
TES ?
TFA ?
TFE ?
urea ?
stop_
loop_
_item_examples.case
;
CheY; DTT; PMSF
;
stop_
_item_type.code 'line'
save_
save__sample_component.isotopic_labeling
_item_description.description
;
If this molecule in the sample was isotopically labeled provide a description
of the labeling using the methods recommended by the current IUPAC/IUBMB/IUPAB
Interunion Task Group
;
_item.name '_sample_component.isotopic_labeling'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'natural abundance' ?
'[U-100% 15N]' ?
'[U-99% 15N]' 'Uniformly labeled with 15N at a level of 99 percent'
'[U-98% 15N]' ?
'[U-95% 15N]' ?
'[U-90% 15N]' ?
[U-15N] 'Uniformly labeled with 15N at an unknown percentage'
'[U-100% 13C]' ?
'[U-95% 13C]' ?
'[U-10% 13C]' 'Uniformly labeled with 13C at a level of 10 percent'
[U-13C] 'Uniformly labeled with 13C at an unknown percentage'
'[U-100% 13C; U-100% 15N]' ?
'[U-99% 13C; U-99% 15N]' 'Uniformly labeled with 13C at 99 percent and 15N at 99 percent'
'[U-98% 13C; U-98% 15N]' ?
'[U-95% 13C; U-95% 15N]' ?
'[U-95% 13C; U-90% 15N]' ?
'[U-10% 13C; U-100% 15N]' ?
'[U-10% 13C; U-99% 15N]' ?
'[U-13C; U-15N]' 'Uniformly labeled with 13C and 15N at unknown percentages'
'[U-100% 13C; U-100% 15N; 80% 2H]' ?
'[U-13C; U-15N; U-2H]' 'Uniformly labeled with 13C 15N and 2H at unknown percentages'
'[U-100% 2H]' ?
'[U-99% 2H]' ?
[U-2H] ?
'[U-13C; U-15N]-Ade' 'All adenine nucleotides labeled fully with both 13C and 15N'
'[U-13C; U-15N]-Cyt' 'All cytosine nucleotides labeled fully with both 13C and 15N'
'[U-13C; U-15N]-Gua' 'All guanine nucleotides labeled fully with both 13C and 15N'
'[U-13C; U-15N]-Ura' 'All uracil nucleotides labeled fully with both 13C and 15N'
[U-15N]-Leu 'Uniformly labeled 15N Leu residues'
'[95% 13CA]-Trp' 'All Trp residues labeled 95 percent with 13C in the CA position'
stop_
loop_
_item_examples.case
;
[U-95% 13C; U-90% 15N]
;
stop_
_item_default.value 'none'
_item_type.code 'line'
save_
save__sample_component.assembly_id
_item_description.description
;
Pointer to '_Assembly.ID'
;
_item.name '_sample_component.assembly_id'
_item.category_id 'sample_component'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component.assembly_label
_item_description.description
;
Pointer to a saveframe of the category assembly.
;
_item.name '_sample_component.assembly_label'
_item.category_id 'sample_component'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__sample_component.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_sample_component.entity_id'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component.entity_label
_item_description.description
;
Pointer to a saveframe of the category entity.
;
_item.name '_sample_component.entity_label'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__sample_component.product_id
_item_description.description
;
Not currently modeled. This ID would be a pointer to the categories describing
the production and purification of the sample component.
;
_item.name '_sample_component.product_id'
_item.category_id 'sample_component'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component.type
_item_description.description
;
Enter the class of molecule ( proteins DNA buffer salt) to which the sample
component belongs.
;
_item.name '_sample_component.type'
_item.category_id 'sample_component'
_item.mandatory_code no
loop_
_item_examples.case
;
protein DNA RNA carbohydrate buffer salt
;
stop_
_item_type.code 'line'
save_
save__sample_component.concentration_val
_item_description.description
;
Value for the concentration of the sample component (units will be entered
below).
;
_item.name '_sample_component.concentration_val'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
2 or 0.7-1.2
;
stop_
_item_type.code 'float'
save_
save__sample_component.concentration_val_min
_item_description.description
;
If entering a range for the concentration of the component provide the
minimal value.
;
_item.name '_sample_component.concentration_val_min'
_item.category_id 'sample_component'
_item.mandatory_code no
loop_
_item_examples.case
;
0.5
;
stop_
_item_type.code 'float'
save_
save__sample_component.concentration_val_max
_item_description.description
;
If entering a range for the concentration of the sample component provide
the maximal value.
;
_item.name '_sample_component.concentration_val_max'
_item.category_id 'sample_component'
_item.mandatory_code no
loop_
_item_examples.case
;
3
;
stop_
_item_type.code 'float'
save_
save__sample_component.concentration_val_units
_item_description.description
;
Units used to express the concentration of the sample component.
;
_item.name '_sample_component.concentration_val_units'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
M Molar
mM millimolar
uM micromolar
nM nanomolar
% percent
v/v 'volume to volume'
w/v 'weight to volume'
stop_
loop_
_item_examples.case
;
millimolar
;
stop_
_item_default.value 'mM'
_item_type.code 'line'
save_
save__sample_component.concentration_val_err
_item_description.description
;
Estimate for the standard error associated with the concentration value
of the sample component.
;
_item.name '_sample_component.concentration_val_err'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
0.2
;
stop_
_item_type.code 'float'
save_
save__sample_component.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample_component.entry_id'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_component.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_sample_component.sample_id'
_item.category_id 'sample_component'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_sample_component_atom_isotope
_category.description
;
Items in the sample_component_atom_isotope category provide information about the isotopic labeling of individual atom in a component of a sample when complex patterns of selective isotopic labeling are used.
;
_category.id 'sample_component_atom_isotope'
_category.mandatory_code yes
loop_
_category_key.name
'_sample_component_atom_isotope.sample_component_id'
'_sample_component_atom_isotope.entity_id'
'_sample_component_atom_isotope.comp_index_id'
'_sample_component_atom_isotope.atom_id'
'_sample_component_atom_isotope.isotope_number'
'_sample_component_atom_isotope.entry_id'
'_sample_component_atom_isotope.sample_id'
stop_
loop_
_category_group.id
'inclusive_group'
'sample'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample_component_atom_isotope.sample_component_id
_item_description.description
;
Pointer to '_Sample_component.ID'
;
_item.name '_sample_component_atom_isotope.sample_component_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component_atom_isotope.mol_common_name
_item_description.description
;
A common name used for the labaled chemical compound.
;
_item.name '_sample_component_atom_isotope.mol_common_name'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample_component_atom_isotope.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_sample_component_atom_isotope.assembly_atom_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component_atom_isotope.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_sample_component_atom_isotope.entity_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component_atom_isotope.entity_label
_item_description.description
;
Pointer to a saveframe of the category 'entity'
;
_item.name '_sample_component_atom_isotope.entity_label'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__sample_component_atom_isotope.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_sample_component_atom_isotope.comp_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_component_atom_isotope.comp_isotope_label_code
_item_description.description
;
A code that uniquely defines the atoms that are isotopically labeled in
a chemical component.
;
_item.name '_sample_component_atom_isotope.comp_isotope_label_code'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample_component_atom_isotope.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_sample_component_atom_isotope.comp_index_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component_atom_isotope.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_sample_component_atom_isotope.seq_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component_atom_isotope.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_sample_component_atom_isotope.atom_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__sample_component_atom_isotope.atom_type
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_sample_component_atom_isotope.atom_type'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__sample_component_atom_isotope.isotope_number
_item_description.description
;
The isotope number for the chemical element (number of protons plus number
of neutrons in the nucleus).
;
_item.name '_sample_component_atom_isotope.isotope_number'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_component_atom_isotope.label_pct
_item_description.description
;
The percentage of the atoms at this site that are labeled with the designated
isotope.
;
_item.name '_sample_component_atom_isotope.label_pct'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__sample_component_atom_isotope.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample_component_atom_isotope.entry_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_component_atom_isotope.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_sample_component_atom_isotope.sample_id'
_item.category_id 'sample_component_atom_isotope'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_sample_citation
_category.description
;
Items in the sample_citation category provide links to the citations category where reference citations with information about a sample or its preparation can be found.
;
_category.id 'sample_citation'
_category.mandatory_code yes
loop_
_category_key.name
'_sample_citation.citation_id'
'_sample_citation.entry_id'
'_sample_citation.sample_id'
stop_
loop_
_category_group.id
'inclusive_group'
'sample'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_sample_citation.citation_id'
_item.category_id 'sample_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_sample_citation.citation_label'
_item.category_id 'sample_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__sample_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample_citation.entry_id'
_item.category_id 'sample_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_citation.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_sample_citation.sample_id'
_item.category_id 'sample_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_sample_condition_list
_category.description
;
Items in the sample_conditions_list define a unique set of sample conditions.
;
_category.id 'sample_condition_list'
_category.mandatory_code yes
loop_
_category_key.name
'_sample_condition_list.entry_id'
'_sample_condition_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'sample_conditions'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample_condition_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_sample_condition_list.sf_category'
_item.category_id 'sample_condition_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_condition_list.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this set of sample conditions.
;
_item.name '_sample_condition_list.sf_framecode'
_item.category_id 'sample_condition_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
conditions_1
;
stop_
_item_default.value 'sample_conditions_1'
_item_type.code 'code'
save_
save__sample_condition_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample_condition_list.entry_id'
_item.category_id 'sample_condition_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_condition_list.id
_item_description.description
;
A value that uniquely identifies the set of sample conditions from other sample
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_sample_condition_list.id' 'sample_condition_list' yes
'_sample_condition_variable.sample_condition_list_id' 'sample_condition_variable' yes
'_sample_condition_citation.sample_condition_list_id' 'sample_condition_citation' yes
'_experiment.sample_condition_list_id' 'experiment' yes
'_nmr_spec_expt.nmr_spectrometer_id' 'nmr_spec_expt' yes
'_assigned_chem_shift_list.sample_condition_list_id' 'assigned_chem_shift_list' yes
'_coupling_constant_list.sample_condition_list_id' 'coupling_constant_list' yes
'_spectral_peak_list.sample_condition_list_id' 'spectral_peak_list' yes
'_chem_shift_isotope_effect_list.sample_condition_list_id' 'chem_shift_isotope_effect_list' yes
'_mol_interaction_chem_shift_diff.sample_condition_list_id' 'mol_interaction_chem_shift_diff' yes
'_chem_shift_anisotropy.sample_condition_list_id' 'chem_shift_anisotropy' yes
'_chem_shifts_calc_type.modeled_sample_cond_list_id' 'chem_shifts_calc_type' yes
'_rdc_list.sample_condition_list_id' 'rdc_list' yes
'_dipolar_coupling_list.sample_condition_list_id' 'dipolar_coupling_list' yes
'_spectral_density_list.sample_condition_list_id' 'spectral_density_list' yes
'_other_data_type_list.sample_condition_list_id' 'other_data_type_list' yes
'_h_exch_rate_list.sample_condition_list_id' 'h_exch_rate_list' yes
'_h_exch_protection_factor_list.sample_condition_list_id' 'h_exch_protection_factor_list' yes
'_homonucl_noe_list.sample_condition_list_id' 'homonucl_noe_list' yes
'_heteronucl_noe_list.sample_condition_list_id' 'heteronucl_noe_list' yes
'_heteronucl_t1_list.sample_condition_list_id' 'heteronucl_t1_list' yes
'_heteronucl_t1rho_list.sample_condition_list_id' 'heteronucl_t1rho_list' yes
'_heteronucl_t2_list.sample_condition_list_id' 'heteronucl_t2_list' yes
'_dipole_dipole_relax_list.sample_condition_list_id' 'dipole_dipole_relax_list' yes
'_cross_correlation_dd_list.sample_condition_list_id' 'cross_correlation_dd_list' yes
'_cross_correlation_d_csa_list.sample_condition_list_id' 'cross_correlation_d_csa_list' yes
'_order_parameter_list.sample_condition_list_id' 'order_parameter_list' yes
'_ph_titration_list.sample_condition_list_id' 'ph_titration_list' yes
'_d_h_fractionation_factor_list.sample_condition_list_id' 'd_h_fractionation_factor_list' yes
'_deduced_secd_struct_list.sample_condition_list_id' 'deduced_secd_struct_list' yes
'_deduced_h_bond_list.sample_condition_list_id' 'deduced_h_bond_list' yes
'_conformer_family_coord_set.sample_condition_list_id' 'conformer_family_coord_set' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_sample_condition_variable.sample_condition_list_id' '_sample_condition_list.id'
'_sample_condition_citation.sample_condition_list_id' '_sample_condition_list.id'
'_experiment.sample_condition_list_id' '_sample_condition_list.id'
'_nmr_spec_expt.nmr_spectrometer_id' '_sample_condition_list.id'
'_assigned_chem_shift_list.sample_condition_list_id' '_sample_condition_list.id'
'_coupling_constant_list.sample_condition_list_id' '_sample_condition_list.id'
'_spectral_peak_list.sample_condition_list_id' '_sample_condition_list.id'
'_chem_shift_isotope_effect_list.sample_condition_list_id' '_sample_condition_list.id'
'_mol_interaction_chem_shift_diff.sample_condition_list_id' '_sample_condition_list.id'
'_chem_shift_anisotropy.sample_condition_list_id' '_sample_condition_list.id'
'_chem_shifts_calc_type.modeled_sample_cond_list_id' '_sample_condition_list.id'
'_rdc_list.sample_condition_list_id' '_sample_condition_list.id'
'_dipolar_coupling_list.sample_condition_list_id' '_sample_condition_list.id'
'_spectral_density_list.sample_condition_list_id' '_sample_condition_list.id'
'_other_data_type_list.sample_condition_list_id' '_sample_condition_list.id'
'_h_exch_rate_list.sample_condition_list_id' '_sample_condition_list.id'
'_h_exch_protection_factor_list.sample_condition_list_id' '_sample_condition_list.id'
'_homonucl_noe_list.sample_condition_list_id' '_sample_condition_list.id'
'_heteronucl_noe_list.sample_condition_list_id' '_sample_condition_list.id'
'_heteronucl_t1_list.sample_condition_list_id' '_sample_condition_list.id'
'_heteronucl_t1rho_list.sample_condition_list_id' '_sample_condition_list.id'
'_heteronucl_t2_list.sample_condition_list_id' '_sample_condition_list.id'
'_dipole_dipole_relax_list.sample_condition_list_id' '_sample_condition_list.id'
'_cross_correlation_dd_list.sample_condition_list_id' '_sample_condition_list.id'
'_cross_correlation_d_csa_list.sample_condition_list_id' '_sample_condition_list.id'
'_order_parameter_list.sample_condition_list_id' '_sample_condition_list.id'
'_ph_titration_list.sample_condition_list_id' '_sample_condition_list.id'
'_d_h_fractionation_factor_list.sample_condition_list_id' '_sample_condition_list.id'
'_deduced_secd_struct_list.sample_condition_list_id' '_sample_condition_list.id'
'_deduced_h_bond_list.sample_condition_list_id' '_sample_condition_list.id'
'_conformer_family_coord_set.sample_condition_list_id' '_sample_condition_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_condition_list.details
_item_description.description
;
General details describing conditions of both the sample and the environment
during measurements.
;
_item.name '_sample_condition_list.details'
_item.category_id 'sample_condition_list'
_item.mandatory_code no
loop_
_item_examples.case
;
The high salinity of the sample may have contributed to overheating of the sample during experiments with long saturation periods like the TOCSY experiments.
;
stop_
_item_type.code 'text'
save_
save_sample_condition_variable
_category.description
;
Items in the sample_condition_variable category define specific sample conditions like temperature or pH and the values for the sample conditions used in collecting experimental data.
;
_category.id 'sample_condition_variable'
_category.mandatory_code yes
loop_
_category_key.name
'_sample_condition_variable.type'
stop_
loop_
_category_group.id
'inclusive_group'
'sample_conditions'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample_condition_variable.type
_item_description.description
;
The variable used to define a specific sample condition (i.e., temperature)used
when conducting experiments used to derive the experimental data included
in the file.
;
_item.name '_sample_condition_variable.type'
_item.category_id 'sample_condition_variable'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
pH ?
pH* ?
pD ?
temperature ?
pressure ?
'ionic strength' ?
viscosity ?
'dielectric constant' ?
'temperature controller setting' ?
stop_
loop_
_item_examples.case
;
temperature$ pressure$ pH
;
stop_
_item_type.code 'line'
save_
save__sample_condition_variable.val
_item_description.description
;
Value for the variable (temperature pressure pH). Units will be listed below.
;
_item.name '_sample_condition_variable.val'
_item.category_id 'sample_condition_variable'
_item.mandatory_code yes
loop_
_item_examples.case
;
308
;
stop_
_item_type.code 'float'
save_
save__sample_condition_variable.val_err
_item_description.description
;
Estimate the standard error on the value for the sample condition.
;
_item.name '_sample_condition_variable.val_err'
_item.category_id 'sample_condition_variable'
_item.mandatory_code yes
loop_
_item_examples.case
;
0.2
;
stop_
_item_type.code 'float'
save_
save__sample_condition_variable.val_units
_item_description.description
;
Units for the value of the sample condition (temperature pressure pH).
;
_item.name '_sample_condition_variable.val_units'
_item.category_id 'sample_condition_variable'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Pa "Pascal 1 Pa = 1 N m^-2"
bar "bar 1 bar = 10^5 Pa"
atm ?
mmHg ?
Torr ?
mbar millibar
K Kelvin
C ?
pH ?
M ?
mM ?
stop_
loop_
_item_examples.case
;
K
;
stop_
_item_type.code 'line'
save_
save__sample_condition_variable.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample_condition_variable.entry_id'
_item.category_id 'sample_condition_variable'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_condition_variable.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_sample_condition_variable.sample_condition_list_id'
_item.category_id 'sample_condition_variable'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_sample_condition_citation
_category.description
;
Items in the sample_condition_citation category provide links to the citations category where reference citations with information about a set of sample conditions and their use can be found.
;
_category.id 'sample_condition_citation'
_category.mandatory_code yes
loop_
_category_key.name
'_sample_condition_citation.entry_id'
'_sample_condition_citation.sample_condition_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'sample_conditions'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__sample_condition_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_sample_condition_citation.citation_id'
_item.category_id 'sample_condition_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__sample_condition_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_sample_condition_citation.citation_label'
_item.category_id 'sample_condition_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__sample_condition_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_sample_condition_citation.entry_id'
_item.category_id 'sample_condition_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__sample_condition_citation.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_sample_condition_citation.sample_condition_list_id'
_item.category_id 'sample_condition_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_purity_list
_category.description
;
Items in the entity_purity_list category define a unique set of information about the purity of molecular entities in samples used to collect experimental data.
;
_category.id 'entity_purity_list'
loop_
_category_key.name
'_entity_purity_list.entry_id'
'_entity_purity_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'molecule_purity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_purity_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_entity_purity_list.sf_category'
_item.category_id 'entity_purity_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_purity_list.sf_framecode
_item_description.description
;
A descriptive label for this set of molecule purity values.
;
_item.name '_entity_purity_list.sf_framecode'
_item.category_id 'entity_purity_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_purity_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_purity_list.entry_id'
_item.category_id 'entity_purity_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_purity_list.id
_item_description.description
;
An integer value that uniquely identifies this saveframe from other saveframes
in the entry of the same category.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_entity_purity_list.id' 'entity_purity_list' yes
'_entity_purity.entity_purity_list_id' 'entity_purity' yes
'_entity_purity_citation.entity_purity_list_id' 'entity_purity_citation' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_entity_purity.entity_purity_list_id' '_entity_purity_list.id'
'_entity_purity_citation.entity_purity_list_id' '_entity_purity_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_purity_list.details
_item_description.description
;
Text providing additional information describing the purity of the molecules
reported.
;
_item.name '_entity_purity_list.details'
_item.category_id 'entity_purity_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_entity_purity
_category.description
;
Items in the entity_purity category define the purity of a molecular entity in a sample.
;
_category.id 'entity_purity'
loop_
_category_key.name
'_entity_purity.id'
'_entity_purity.entry_id'
'_entity_purity.entity_purity_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'molecule_purity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_purity.id
_item_description.description
;
An integer value that uniquely identifies the purity value in the table
of reported purity values in the entry.
;
_item.name '_entity_purity.id'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_purity.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_entity_purity.sample_id'
_item.category_id 'entity_purity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_purity.sample_label
_item_description.description
;
Pointer to a saveframe of the category sample.
;
_item.name '_entity_purity.sample_label'
_item.category_id 'entity_purity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__entity_purity.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_entity_purity.entity_id'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_purity.entity_label
_item_description.description
;
Pointer to a saveframe of the category entity.
;
_item.name '_entity_purity.entity_label'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__entity_purity.val
_item_description.description
;
Purity value
;
_item.name '_entity_purity.val'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__entity_purity.val_units
_item_description.description
;
Units for the reported purity value.
;
_item.name '_entity_purity.val_units'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__entity_purity.measurement_method
_item_description.description
;
Technique used to determine the purity of the molecule.
;
_item.name '_entity_purity.measurement_method'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
mass spectrometry
;
stop_
_item_type.code 'line'
save_
save__entity_purity.details
_item_description.description
;
Text describing the reported purity values and measurements.
;
_item.name '_entity_purity.details'
_item.category_id 'entity_purity'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__entity_purity.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_purity.entry_id'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_purity.entity_purity_list_id
_item_description.description
;
Pointer to '_Entity_purity_list.ID'
;
_item.name '_entity_purity.entity_purity_list_id'
_item.category_id 'entity_purity'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_entity_purity_citation
_category.description
;
Items in the entity_purity_citation provide links to the citations category where literature references can be found.
;
_category.id 'entity_purity_citation'
loop_
_category_key.name
'_entity_purity_citation.citation_id'
'_entity_purity_citation.entry_id'
'_entity_purity_citation.entity_purity_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'molecule_purity'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__entity_purity_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_entity_purity_citation.citation_id'
_item.category_id 'entity_purity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__entity_purity_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_entity_purity_citation.citation_label'
_item.category_id 'entity_purity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__entity_purity_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_entity_purity_citation.entry_id'
_item.category_id 'entity_purity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__entity_purity_citation.entity_purity_list_id
_item_description.description
;
Pointer to '_Entity_purity_list.ID'
;
_item.name '_entity_purity_citation.entity_purity_list_id'
_item.category_id 'entity_purity_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_software
_category.description
;
Items in the software category describe software applications.
;
_category.id 'software'
loop_
_category_key.name
'_software.entry_id'
'_software.id'
stop_
loop_
_category_group.id
'inclusive_group'
'software'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__software.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_software.sf_category'
_item.category_id 'software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__software.sf_framecode
_item_description.description
;
A label that uniquely identifies the software from other software listed
in the entry.
;
_item.name '_software.sf_framecode'
_item.category_id 'software'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
AMBER ?
AngleSearch ?
ANSIG ?
AQUA ?
ARIA ?
AURELIA ?
Auremol ?
AutoAssign ?
AutoStruct ?
AVS ?
AZARA ?
BIRDER ?
CAPP ?
CNS ?
CNSSOLVE ?
CORMA ?
CSI ?
CURVES ?
CYANA ?
DGII ?
DIAMOD ?
DIANA ?
DISCOVER ?
DSPACE ?
DYANA ?
EMBOSS ?
FANTOM ?
Felix ?
GARANT ?
GIFA ?
GROMOS ?
HYPER ?
InsightII ?
MARDIGRAS ?
ModelFree ?
Molmol ?
MORASS ?
NDEE ?
NMRCOMPASS ?
NMRDraw ?
NMRPipe ?
NMRView ?
NOAH ?
NOEID ?
NUCFIT ?
OPAL ?
PECAN ?
PIPP ?
PISTACHIO ?
Procheck ?
ProcheckNMR ?
P-ROI ?
PRONTO ?
PROSA ?
RESCUE ?
SANE ?
SPARKY ?
SPSCAN ?
SYBYL ?
TALOS ?
TINKER ?
TRIPOS ?
UXNMR ?
VNMR ?
WhatIF ?
Wattos ?
XEASY ?
X-PLOR ?
'X-PLOR NIH' ?
xwinnmr ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_software.entry_id'
_item.category_id 'software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__software.id
_item_description.description
;
A value that uniquely identifies the software from other software listed
in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_software.id' 'software' yes
'_task.software_id' 'task' yes
'_vendor.software_id' 'vendor' yes
'_software_citation.software_id' 'software_citation' yes
'_nmr_spec_expt.software_id' 'nmr_spec_expt' yes
'_nmr_spectral_proc_software.software_id' 'nmr_spectral_proc_software' yes
'_chem_shift_software.software_id' 'chem_shift_software' yes
'_coupling_constant_software.software_id' 'coupling_constant_software' yes
'_spectral_peak_software.software_id' 'spectral_peak_software' yes
'_isotope_effect_software.software_id' 'isotope_effect_software' yes
'_mol_interaction_diff_software.software_id' 'mol_interaction_diff_software' yes
'_cs_anisotropy_software.software_id' 'cs_anisotropy_software' yes
'_chem_shifts_calc_software.software_id' 'chem_shifts_calc_software' yes
'_rdc_software.software_id' 'rdc_software' yes
'_dipolar_coupling_software.software_id' 'dipolar_coupling_software' yes
'_spectral_density_software.software_id' 'spectral_density_software' yes
'_other_data_software.software_id' 'other_data_software' yes
'_h_exch_rate_software.software_id' 'h_exch_rate_software' yes
'_h_exch_protect_fact_software.software_id' 'h_exch_protect_fact_software' yes
'_homonucl_noe_software.software_id' 'homonucl_noe_software' yes
'_heteronucl_noe_software.software_id' 'heteronucl_noe_software' yes
'_heteronucl_t1_software.software_id' 'heteronucl_t1_software' yes
'_heteronucl_t1rho_software.software_id' 'heteronucl_t1rho_software' yes
'_heteronucl_t2_software.software_id' 'heteronucl_t2_software' yes
'_dipole_dipole_relax_software.software_id' 'dipole_dipole_relax_software' yes
'_cross_correlation_dd_software.software_id' 'cross_correlation_dd_software' yes
'_cross_correlation_d_csa_software.software_id' 'cross_correlation_d_csa_software' yes
'_order_parameter_software.software_id' 'order_parameter_software' yes
'_ph_titration_software.software_id' 'ph_titration_software' yes
'_d_h_fract_factor_software.software_id' 'd_h_fract_factor_software' yes
'_deduced_secd_struct_software.software_id' 'deduced_secd_struct_software' yes
'_deduced_h_bond_software.software_id' 'deduced_h_bond_software' yes
'_conf_stats_software.software_id' 'conf_stats_software' yes
'_conformer_family_software.software_id' 'conformer_family_software' yes
'_rep_conf_software.software_id' 'rep_conf_software' yes
'_constraint_file.software_id' 'constraint_file' yes
'_force_constant_software.software_id' 'force_constant_software' yes
'_distance_constraint_software.software_id' 'distance_constraint_software' yes
'_dist_constr_software_setting.software_id' 'dist_constr_software_setting' yes
'_floating_chirality_software.software_id' 'floating_chirality_software' yes
'_torsion_angle_constraint_software.software_id' 'torsion_angle_constraint_software' yes
'_rdc_constraint_software.software_id' 'rdc_constraint_software' yes
'_j_three_bond_constraint_software.software_id' 'j_three_bond_constraint_software' yes
'_ca_cb_constraint_software.software_id' 'ca_cb_constraint_software' yes
'_h_chem_shift_constraint_software.software_id' 'h_chem_shift_constraint_software' yes
'_other_constraint_software.software_id' 'other_constraint_software' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_task.software_id' '_software.id'
'_vendor.software_id' '_software.id'
'_software_citation.software_id' '_software.id'
'_nmr_spec_expt.software_id' '_software.id'
'_nmr_spectral_proc_software.software_id' '_software.id'
'_chem_shift_software.software_id' '_software.id'
'_coupling_constant_software.software_id' '_software.id'
'_spectral_peak_software.software_id' '_software.id'
'_isotope_effect_software.software_id' '_software.id'
'_mol_interaction_diff_software.software_id' '_software.id'
'_cs_anisotropy_software.software_id' '_software.id'
'_chem_shifts_calc_software.software_id' '_software.id'
'_rdc_software.software_id' '_software.id'
'_dipolar_coupling_software.software_id' '_software.id'
'_spectral_density_software.software_id' '_software.id'
'_other_data_software.software_id' '_software.id'
'_h_exch_rate_software.software_id' '_software.id'
'_h_exch_protect_fact_software.software_id' '_software.id'
'_homonucl_noe_software.software_id' '_software.id'
'_heteronucl_noe_software.software_id' '_software.id'
'_heteronucl_t1_software.software_id' '_software.id'
'_heteronucl_t1rho_software.software_id' '_software.id'
'_heteronucl_t2_software.software_id' '_software.id'
'_dipole_dipole_relax_software.software_id' '_software.id'
'_cross_correlation_dd_software.software_id' '_software.id'
'_cross_correlation_d_csa_software.software_id' '_software.id'
'_order_parameter_software.software_id' '_software.id'
'_ph_titration_software.software_id' '_software.id'
'_d_h_fract_factor_software.software_id' '_software.id'
'_deduced_secd_struct_software.software_id' '_software.id'
'_deduced_h_bond_software.software_id' '_software.id'
'_conf_stats_software.software_id' '_software.id'
'_conformer_family_software.software_id' '_software.id'
'_rep_conf_software.software_id' '_software.id'
'_constraint_file.software_id' '_software.id'
'_force_constant_software.software_id' '_software.id'
'_distance_constraint_software.software_id' '_software.id'
'_dist_constr_software_setting.software_id' '_software.id'
'_floating_chirality_software.software_id' '_software.id'
'_torsion_angle_constraint_software.software_id' '_software.id'
'_rdc_constraint_software.software_id' '_software.id'
'_j_three_bond_constraint_software.software_id' '_software.id'
'_ca_cb_constraint_software.software_id' '_software.id'
'_h_chem_shift_constraint_software.software_id' '_software.id'
'_other_constraint_software.software_id' '_software.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__software.name
_item_description.description
;
The name of the software defined by the author or provider of the software.
;
_item.name '_software.name'
_item.category_id 'software'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
AMBER ?
AngleSearch ?
ANSIG ?
AQUA ?
ARIA ?
AURELIA ?
Auremol ?
AutoAssign ?
AutoStruct ?
AVS ?
AZARA ?
BIRDER ?
CAPP ?
CNS ?
CNSSOLVE ?
CORMA ?
CSI ?
CURVES ?
CYANA ?
DGII ?
DIAMOD ?
DISCOVER ?
DYANA ?
EMBOSS ?
FANTOM ?
Felix ?
GARANT ?
GIFA ?
HYPER ?
InsightII ?
MARDIGRAS ?
ModelFree ?
Molmol ?
MORASS ?
NDEE ?
NMRDraw ?
NMRPipe ?
NMRView ?
NOAH ?
NOEID ?
NUCFIT ?
OPAL ?
PECAN ?
PIPP ?
PISTACHIO ?
Procheck ?
ProcheckNMR ?
P-ROI ?
PRONTO ?
PROSA ?
RESCUE ?
SANE ?
SPARKY ?
SPSCAN ?
SYBYL ?
TALOS ?
UXNMR ?
VNMR ?
WhatIF ?
Wattos ?
XEASY ?
X-PLOR ?
'X-PLOR NIH' ?
xwinnmr ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__software.version
_item_description.description
;
The code assigned to the version of the software.
;
_item.name '_software.version'
_item.category_id 'software'
_item.mandatory_code no
loop_
_item_examples.case
;
v3.0.0.8
;
stop_
_item_type.code 'line'
save_
save__software.details
_item_description.description
;
Text description of the software.
;
_item.name '_software.details'
_item.category_id 'software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_task
_category.description
;
Items in the task category describe the tasks the software performed.
;
_category.id 'task'
loop_
_category_key.name
'_task.task'
'_task.entry_id'
'_task.software_id'
stop_
loop_
_category_group.id
'inclusive_group'
'software'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__task.task
_item_description.description
;
A word or brief phrase that describes the job that a software application
was used to carry out.
;
_item.name '_task.task'
_item.category_id 'task'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
collection ?
'chemical shift assignment' ?
'data analysis' ?
'peak picking' ?
processing ?
refinement ?
'structure solution' ?
stop_
loop_
_item_examples.case
;
'automated peak assignments'
;
stop_
_item_type.code 'line'
save_
save__task.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_task.entry_id'
_item.category_id 'task'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__task.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_task.software_id'
_item.category_id 'task'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_vendor
_category.description
;
Items in the vendor category define from whom a software application can be obtained.
;
_category.id 'vendor'
loop_
_category_key.name
'_vendor.name'
'_vendor.entry_id'
'_vendor.software_id'
stop_
loop_
_category_group.id
'inclusive_group'
'software'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__vendor.name
_item_description.description
;
Commercial or academic supplier of the software product.
;
_item.name '_vendor.name'
_item.category_id 'vendor'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Bruker ?
'One Moon Software' ?
Varian ?
stop_
loop_
_item_examples.case
;
NIH
;
stop_
_item_type.code 'line'
save_
save__vendor.address
_item_description.description
;
Location for the person or company who supplies the software.
;
_item.name '_vendor.address'
_item.category_id 'vendor'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__vendor.electronic_address
_item_description.description
;
An internet address for the vendor of the software.
;
_item.name '_vendor.electronic_address'
_item.category_id 'vendor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__vendor.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_vendor.entry_id'
_item.category_id 'vendor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__vendor.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_vendor.software_id'
_item.category_id 'vendor'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_software_citation
_category.description
;
Items in the software_citation category provide links to the citations category where literature references describing the software can be found.
;
_category.id 'software_citation'
loop_
_category_key.name
'_software_citation.citation_id'
'_software_citation.entry_id'
'_software_citation.software_id'
stop_
loop_
_category_group.id
'inclusive_group'
'software'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__software_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_software_citation.citation_id'
_item.category_id 'software_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__software_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_software_citation.citation_label'
_item.category_id 'software_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__software_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_software_citation.entry_id'
_item.category_id 'software_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__software_citation.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_software_citation.software_id'
_item.category_id 'software_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_method
_category.description
;
category description not available
;
_category.id 'method'
loop_
_category_key.name
'_method.entry_id'
'_method.id'
stop_
loop_
_category_group.id
'inclusive_group'
'method'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__method.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_method.sf_category'
_item.category_id 'method'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__method.sf_framecode
_item_description.description
;
Descriptive label used to uniquely identify this method.
;
_item.name '_method.sf_framecode'
_item.category_id 'method'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__method.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_method.entry_id'
_item.category_id 'method'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__method.id
_item_description.description
;
A value that uniquely identifies the method describe from other methods
given in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_method.id' 'method' yes
'_method_file.method_id' 'method_file' yes
'_method_param.method_id' 'method_param' yes
'_method_citation.method_id' 'method_citation' yes
'_nmr_spec_expt.method_id' 'nmr_spec_expt' yes
'_nmr_spectral_proc_software.method_id' 'nmr_spectral_proc_software' yes
'_chem_shift_software.method_id' 'chem_shift_software' yes
'_coupling_constant_software.method_id' 'coupling_constant_software' yes
'_spectral_peak_software.method_id' 'spectral_peak_software' yes
'_peak_general_char.measurement_method' 'peak_general_char' yes
'_isotope_effect_software.method_id' 'isotope_effect_software' yes
'_mol_interaction_diff_software.method_id' 'mol_interaction_diff_software' yes
'_cs_anisotropy_software.method_id' 'cs_anisotropy_software' yes
'_chem_shifts_calc_software.method_id' 'chem_shifts_calc_software' yes
'_rdc_software.method_id' 'rdc_software' yes
'_dipolar_coupling_software.method_id' 'dipolar_coupling_software' yes
'_spectral_density_software.method_id' 'spectral_density_software' yes
'_other_data_software.method_id' 'other_data_software' yes
'_h_exch_rate_software.method_id' 'h_exch_rate_software' yes
'_h_exch_protect_fact_software.method_id' 'h_exch_protect_fact_software' yes
'_homonucl_noe_software.method_id' 'homonucl_noe_software' yes
'_heteronucl_noe_software.method_id' 'heteronucl_noe_software' yes
'_heteronucl_t1_software.method_id' 'heteronucl_t1_software' yes
'_heteronucl_t1rho_software.method_id' 'heteronucl_t1rho_software' yes
'_heteronucl_t2_software.method_id' 'heteronucl_t2_software' yes
'_dipole_dipole_relax_software.method_id' 'dipole_dipole_relax_software' yes
'_cross_correlation_dd_software.method_id' 'cross_correlation_dd_software' yes
'_cross_correlation_d_csa_software.method_id' 'cross_correlation_d_csa_software' yes
'_order_parameter_software.method_id' 'order_parameter_software' yes
'_ph_titration_software.method_id' 'ph_titration_software' yes
'_d_h_fract_factor_software.method_id' 'd_h_fract_factor_software' yes
'_deduced_secd_struct_software.method_id' 'deduced_secd_struct_software' yes
'_deduced_secd_struct_exptl.selection_method_id' 'deduced_secd_struct_exptl' yes
'_deduced_h_bond_software.method_id' 'deduced_h_bond_software' yes
'_conf_stats_software.method_id' 'conf_stats_software' yes
'_conformer_family_software.method_id' 'conformer_family_software' yes
'_rep_conf_software.method_id' 'rep_conf_software' yes
'_force_constant_software.method_id' 'force_constant_software' yes
'_tertiary_struct_element_sel.method_id' 'tertiary_struct_element_sel' yes
'_secondary_struct_sel.method_id' 'secondary_struct_sel' yes
'_bond_annotation.selection_method_id' 'bond_annotation' yes
'_structure_interaction.selection_method_id' 'structure_interaction' yes
'_distance_constraint_software.method_id' 'distance_constraint_software' yes
'_distance_constraint_expt.method_id' 'distance_constraint_expt' yes
'_floating_chirality_software.method_id' 'floating_chirality_software' yes
'_torsion_angle_constraint_software.method_id' 'torsion_angle_constraint_software' yes
'_torsion_angle_constraints_expt.method_id' 'torsion_angle_constraints_expt' yes
'_rdc_constraint_software.method_id' 'rdc_constraint_software' yes
'_rdc_constraint_expt.method_id' 'rdc_constraint_expt' yes
'_j_three_bond_constraint_software.method_id' 'j_three_bond_constraint_software' yes
'_j_three_bond_constraint_expt.method_id' 'j_three_bond_constraint_expt' yes
'_ca_cb_constraint_software.method_id' 'ca_cb_constraint_software' yes
'_ca_cb_constraint_expt.method_id' 'ca_cb_constraint_expt' yes
'_h_chem_shift_constraint_software.method_id' 'h_chem_shift_constraint_software' yes
'_h_chem_shift_constraint_expt.method_id' 'h_chem_shift_constraint_expt' yes
'_other_constraint_expt.method_id' 'other_constraint_expt' yes
'_other_constraint_software.method_id' 'other_constraint_software' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_method_file.method_id' '_method.id'
'_method_param.method_id' '_method.id'
'_method_citation.method_id' '_method.id'
'_nmr_spec_expt.method_id' '_method.id'
'_nmr_spectral_proc_software.method_id' '_method.id'
'_chem_shift_software.method_id' '_method.id'
'_coupling_constant_software.method_id' '_method.id'
'_spectral_peak_software.method_id' '_method.id'
'_peak_general_char.measurement_method' '_method.id'
'_isotope_effect_software.method_id' '_method.id'
'_mol_interaction_diff_software.method_id' '_method.id'
'_cs_anisotropy_software.method_id' '_method.id'
'_chem_shifts_calc_software.method_id' '_method.id'
'_rdc_software.method_id' '_method.id'
'_dipolar_coupling_software.method_id' '_method.id'
'_spectral_density_software.method_id' '_method.id'
'_other_data_software.method_id' '_method.id'
'_h_exch_rate_software.method_id' '_method.id'
'_h_exch_protect_fact_software.method_id' '_method.id'
'_homonucl_noe_software.method_id' '_method.id'
'_heteronucl_noe_software.method_id' '_method.id'
'_heteronucl_t1_software.method_id' '_method.id'
'_heteronucl_t1rho_software.method_id' '_method.id'
'_heteronucl_t2_software.method_id' '_method.id'
'_dipole_dipole_relax_software.method_id' '_method.id'
'_cross_correlation_dd_software.method_id' '_method.id'
'_cross_correlation_d_csa_software.method_id' '_method.id'
'_order_parameter_software.method_id' '_method.id'
'_ph_titration_software.method_id' '_method.id'
'_d_h_fract_factor_software.method_id' '_method.id'
'_deduced_secd_struct_software.method_id' '_method.id'
'_deduced_secd_struct_exptl.selection_method_id' '_method.id'
'_deduced_h_bond_software.method_id' '_method.id'
'_conf_stats_software.method_id' '_method.id'
'_conformer_family_software.method_id' '_method.id'
'_rep_conf_software.method_id' '_method.id'
'_force_constant_software.method_id' '_method.id'
'_tertiary_struct_element_sel.method_id' '_method.id'
'_secondary_struct_sel.method_id' '_method.id'
'_bond_annotation.selection_method_id' '_method.id'
'_structure_interaction.selection_method_id' '_method.id'
'_distance_constraint_software.method_id' '_method.id'
'_distance_constraint_expt.method_id' '_method.id'
'_floating_chirality_software.method_id' '_method.id'
'_torsion_angle_constraint_software.method_id' '_method.id'
'_torsion_angle_constraints_expt.method_id' '_method.id'
'_rdc_constraint_software.method_id' '_method.id'
'_rdc_constraint_expt.method_id' '_method.id'
'_j_three_bond_constraint_software.method_id' '_method.id'
'_j_three_bond_constraint_expt.method_id' '_method.id'
'_ca_cb_constraint_software.method_id' '_method.id'
'_ca_cb_constraint_expt.method_id' '_method.id'
'_h_chem_shift_constraint_software.method_id' '_method.id'
'_h_chem_shift_constraint_expt.method_id' '_method.id'
'_other_constraint_expt.method_id' '_method.id'
'_other_constraint_software.method_id' '_method.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__method.derivation_type
_item_description.description
;
The type of derivation used in the reported method.
;
_item.name '_method.derivation_type'
_item.category_id 'method'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__method.details
_item_description.description
;
Text description providing additional information about the reported method.
;
_item.name '_method.details'
_item.category_id 'method'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__method.computer_id
_item_description.description
;
Pointer to '_Computer.ID'
;
_item.name '_method.computer_id'
_item.category_id 'method'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__method.computer_label
_item_description.description
;
Pointer to a saveframe of the category computer.
;
_item.name '_method.computer_label'
_item.category_id 'method'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save_method_file
_category.description
;
category description not available
;
_category.id 'method_file'
loop_
_category_key.name
'_method_file.name'
'_method_file.entry_id'
'_method_file.method_id'
stop_
loop_
_category_group.id
'inclusive_group'
'method'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__method_file.name
_item_description.description
;
Name for the file containing the source code or protocol for the reported
method.
;
_item.name '_method_file.name'
_item.category_id 'method_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__method_file.text_format
_item_description.description
;
The format used in the ASCII texted document that is the method and is
the value to the tag _Method.Text.
;
_item.name '_method_file.text_format'
_item.category_id 'method_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__method_file.text
_item_description.description
;
The method provided as an ASCII text document that is included in the NMR-STAR
file as a value to this tag.
;
_item.name '_method_file.text'
_item.category_id 'method_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__method_file.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_method_file.entry_id'
_item.category_id 'method_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__method_file.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_method_file.method_id'
_item.category_id 'method_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_method_param
_category.description
;
category description not available
;
_category.id 'method_param'
loop_
_category_key.name
'_method_param.file_name'
'_method_param.entry_id'
'_method_param.method_id'
stop_
loop_
_category_group.id
'inclusive_group'
'method'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__method_param.file_name
_item_description.description
;
Name of the file that contains parameters required to execute the method.
;
_item.name '_method_param.file_name'
_item.category_id 'method_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__method_param.text_format
_item_description.description
;
Format in which the method information is encoded.
;
_item.name '_method_param.text_format'
_item.category_id 'method_param'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__method_param.text
_item_description.description
;
Text for the reported method.
;
_item.name '_method_param.text'
_item.category_id 'method_param'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__method_param.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_method_param.entry_id'
_item.category_id 'method_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__method_param.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_method_param.method_id'
_item.category_id 'method_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_method_citation
_category.description
;
category description not available
;
_category.id 'method_citation'
loop_
_category_key.name
'_method_citation.citation_id'
'_method_citation.entry_id'
'_method_citation.method_id'
stop_
loop_
_category_group.id
'inclusive_group'
'method'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__method_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_method_citation.citation_id'
_item.category_id 'method_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__method_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_method_citation.citation_label'
_item.category_id 'method_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__method_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_method_citation.entry_id'
_item.category_id 'method_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__method_citation.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_method_citation.method_id'
_item.category_id 'method_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectrometer
_category.description
;
Items in the NMR_spectrometer category describe an NMR spectrometer used to collect experimental data.
;
_category.id 'nmr_spectrometer'
loop_
_category_key.name
'_nmr_spectrometer.entry_id'
'_nmr_spectrometer.id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectrometer.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_nmr_spectrometer.sf_category'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer.sf_framecode
_item_description.description
;
A label that uniquely identifies the NMR spectrometer from other spectrometers
listed in the entry.
;
_item.name '_nmr_spectrometer.sf_framecode'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectrometer.entry_id'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer.id
_item_description.description
;
A value that uniquely identifies the NMR spectrometer from other spectrometers
listed in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_nmr_spectrometer.id' 'nmr_spectrometer' yes
'_nmr_spectrometer_citation.nmr_spectrometer_id' 'nmr_spectrometer_citation' yes
'_experiment.nmr_spectrometer_id' 'experiment' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_nmr_spectrometer_citation.nmr_spectrometer_id' '_nmr_spectrometer.id'
'_experiment.nmr_spectrometer_id' '_nmr_spectrometer.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectrometer.details
_item_description.description
;
A text description of the NMR spectrometer.
;
_item.name '_nmr_spectrometer.details'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__nmr_spectrometer.manufacturer
_item_description.description
;
Name of the company or other entity that built the NMR spectrometer.
;
_item.name '_nmr_spectrometer.manufacturer'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Bruker ?
GE ?
JEOL ?
Varian ?
stop_
loop_
_item_examples.case
;
Bruker
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer.model
_item_description.description
;
The name or acronym used to describe the model of the spectrometer.
;
_item.name '_nmr_spectrometer.model'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
AM "from Bruker"
AMX "from Bruker"
ARX 'from Bruker'
Avance "from Bruker"
DMX "from Bruker"
DRX "from Bruker"
MSL "from Bruker"
Gemini "from General Electric"
GN 'from General Electric'
INOVA "from Varian"
JEOL "from JEOL"
Unity "from Varian"
UnityPlus "from Varian"
XL "from Varian"
stop_
loop_
_item_examples.case
;
DMX
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer.serial_number
_item_description.description
;
Unique code assigned to a specific spectrometer by the manufacturer.
;
_item.name '_nmr_spectrometer.serial_number'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code no
loop_
_item_examples.case
;
1234AB5678
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer.field_strength
_item_description.description
;
Approximate strength of the magnetic field for the spectrometer as defined
by the proton frequency of the instrument expressed in MHz.
;
_item.name '_nmr_spectrometer.field_strength'
_item.category_id 'nmr_spectrometer'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
400 ?
500 ?
600 ?
700 ?
750 ?
800 ?
900 ?
920 ?
stop_
loop_
_item_examples.case
;
800
;
stop_
_item_type.code 'float'
save_
save_nmr_spectrometer_citation
_category.description
;
Items in the NMR_spectrometer_citation category provide links to the citations category where literature references describing an NMR spectrometer can be found.
;
_category.id 'nmr_spectrometer_citation'
loop_
_category_key.name
'_nmr_spectrometer_citation.citation_id'
'_nmr_spectrometer_citation.entry_id'
'_nmr_spectrometer_citation.nmr_spectrometer_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectrometer_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_nmr_spectrometer_citation.citation_id'
_item.category_id 'nmr_spectrometer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectrometer_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_nmr_spectrometer_citation.citation_label'
_item.category_id 'nmr_spectrometer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spectrometer_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectrometer_citation.entry_id'
_item.category_id 'nmr_spectrometer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_citation.nmr_spectrometer_id
_item_description.description
;
Pointer to '_NMR_spectrometer.ID'
;
_item.name '_nmr_spectrometer_citation.nmr_spectrometer_id'
_item.category_id 'nmr_spectrometer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectrometer_list
_category.description
;
Items in the NMR_spectrometer_list category define a set of NMR spectrometers and their descriptions.
;
_category.id 'nmr_spectrometer_list'
loop_
_category_key.name
'_nmr_spectrometer_list.entry_id'
'_nmr_spectrometer_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectrometer_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_nmr_spectrometer_list.sf_category'
_item.category_id 'nmr_spectrometer_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_list.sf_framecode
_item_description.description
;
A label that uniquely identifies the NMR spectrometer from other spectrometers
listed in the entry.
;
_item.name '_nmr_spectrometer_list.sf_framecode'
_item.category_id 'nmr_spectrometer_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectrometer_list.entry_id'
_item.category_id 'nmr_spectrometer_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_list.id
_item_description.description
;
A value that uniquely identifies the NMR spectrometer from other spectrometers
listed in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_nmr_spectrometer_list.id' 'nmr_spectrometer_list' yes
'_nmr_spectrometer_view.nmr_spectrometer_list_id' 'nmr_spectrometer_view' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_nmr_spectrometer_view.nmr_spectrometer_list_id' '_nmr_spectrometer_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectrometer_view
_category.description
;
Items in the NMR_spectrometer_view category provide a list of NMR spectrometers and descriptions for each spectrometer in the list.
;
_category.id 'nmr_spectrometer_view'
loop_
_category_key.name
'_nmr_spectrometer_view.id'
'_nmr_spectrometer_view.name'
'_nmr_spectrometer_view.entry_id'
'_nmr_spectrometer_view.nmr_spectrometer_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectrometer_view.id
_item_description.description
;
An integer value that uniquely identifies one NMR spectrometer from the
others in the table within an entry.
;
_item.name '_nmr_spectrometer_view.id'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectrometer_view.name
_item_description.description
;
A unique name for the NMR spectrometer needs to be entered to make it possible
to reference the spectromer in later sections of the deposition.
;
_item.name '_nmr_spectrometer_view.name'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code no
loop_
_item_examples.case
;
spectrometer 1
;
stop_
_item_default.value 'spectrometer_1'
_item_type.code 'line'
save_
save__nmr_spectrometer_view.manufacturer
_item_description.description
;
Name of the company or other entity that built the NMR spectrometer.
;
_item.name '_nmr_spectrometer_view.manufacturer'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Bruker ?
GE ?
JEOL ?
Varian ?
stop_
loop_
_item_examples.case
;
Bruker
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_view.model
_item_description.description
;
The name or acronym used to describe the model of the spectrometer.
;
_item.name '_nmr_spectrometer_view.model'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
AMX ?
Avance ?
DMX ?
DRX ?
Unity ?
UnityPlus ?
stop_
loop_
_item_examples.case
;
DMX
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_view.serial_number
_item_description.description
;
Unique code assigned to a specific spectrometer by the manufacturer.
;
_item.name '_nmr_spectrometer_view.serial_number'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code no
loop_
_item_examples.case
;
1234AB5678
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_view.field_strength
_item_description.description
;
Approximate strength of the magnetic field for the spectrometer as defined
by the proton frequency of the instrument expressed in MHz.
;
_item.name '_nmr_spectrometer_view.field_strength'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
400 ?
500 ?
600 ?
700 ?
750 ?
800 ?
900 ?
920 ?
stop_
loop_
_item_examples.case
;
800
;
stop_
_item_type.code 'float'
save_
save__nmr_spectrometer_view.details
_item_description.description
;
A text description of the NMR spectrometer.
;
_item.name '_nmr_spectrometer_view.details'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__nmr_spectrometer_view.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_nmr_spectrometer_view.citation_id'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectrometer_view.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_nmr_spectrometer_view.citation_label'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spectrometer_view.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectrometer_view.entry_id'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_view.nmr_spectrometer_list_id
_item_description.description
;
Pointer to '_NMR_spectrometer_list.ID'
;
_item.name '_nmr_spectrometer_view.nmr_spectrometer_list_id'
_item.category_id 'nmr_spectrometer_view'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectrometer_probe
_category.description
;
Items in the NMR_spectrometer_probe category describe an NMR spectrometer probe.
;
_category.id 'nmr_spectrometer_probe'
loop_
_category_key.name
'_nmr_spectrometer_probe.entry_id'
'_nmr_spectrometer_probe.id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_probe'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectrometer_probe.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_nmr_spectrometer_probe.sf_category'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_probe.sf_framecode
_item_description.description
;
A label that uniquely identifies the probe from other probes listed in
the entry.
;
_item.name '_nmr_spectrometer_probe.sf_framecode'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_probe.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectrometer_probe.entry_id'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_probe.id
_item_description.description
;
A value that uniquely identifies the NMR probe from other probes listed
in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_nmr_spectrometer_probe.id' 'nmr_spectrometer_probe' yes
'_nmr_probe.nmr_spectrometer_probe_id' 'nmr_probe' yes
'_nmr_spectrometer_probe_citation.nmr_spectrometer_probe_id' 'nmr_spectrometer_probe_citation' yes
'_nmr_spec_expt.nmr_spectrometer_probe_id' 'nmr_spec_expt' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_nmr_probe.nmr_spectrometer_probe_id' '_nmr_spectrometer_probe.id'
'_nmr_spectrometer_probe_citation.nmr_spectrometer_probe_id' '_nmr_spectrometer_probe.id'
'_nmr_spec_expt.nmr_spectrometer_probe_id' '_nmr_spectrometer_probe.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectrometer_probe.details
_item_description.description
;
Text information describing the NMR spectrometer probe.
;
_item.name '_nmr_spectrometer_probe.details'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__nmr_spectrometer_probe.manufacturer
_item_description.description
;
Name of the company or other entity that built the NMR probe.
;
_item.name '_nmr_spectrometer_probe.manufacturer'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
Bruker ?
DOTY ?
GE ?
JEOL ?
Varian ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_probe.model
_item_description.description
;
The name or acronym used to describe the model of the probe.
;
_item.name '_nmr_spectrometer_probe.model'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_probe.serial_number
_item_description.description
;
Unique code assigned to a specific probe by the manufacturer.
;
_item.name '_nmr_spectrometer_probe.serial_number'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_probe.diameter
_item_description.description
;
The diameter of the probe bore.
;
_item.name '_nmr_spectrometer_probe.diameter'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__nmr_spectrometer_probe.rotor_length
_item_description.description
;
Length of the rotor used in the probe.
;
_item.name '_nmr_spectrometer_probe.rotor_length'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__nmr_spectrometer_probe.rotor_composition
_item_description.description
;
Chemical composition of the rotor used in the probe.
;
_item.name '_nmr_spectrometer_probe.rotor_composition'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_spectrometer_probe.internal_volume
_item_description.description
;
The internal volume of the probe.
;
_item.name '_nmr_spectrometer_probe.internal_volume'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__nmr_spectrometer_probe.spacer_present
_item_description.description
;
A code indicating the presence of a spacer in the probe.
;
_item.name '_nmr_spectrometer_probe.spacer_present'
_item.category_id 'nmr_spectrometer_probe'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
no ?
yes ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'yes_no'
save_
save_nmr_probe
_category.description
;
Items in the NMR_probe category describe the type of probe.
;
_category.id 'nmr_probe'
loop_
_category_key.name
'_nmr_probe.type'
'_nmr_probe.entry_id'
'_nmr_probe.nmr_spectrometer_probe_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_probe'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_probe.type
_item_description.description
;
The type of probe.
;
_item.name '_nmr_probe.type'
_item.category_id 'nmr_probe'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'transmission line' ?
'home built' ?
'triple resonance' ?
'double resonance' ?
'inverse coil' ?
'solenoid coil' ?
'saddle coil' ?
'room temperature' ?
'cryogenically cooled' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_probe.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_probe.entry_id'
_item.category_id 'nmr_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_probe.nmr_spectrometer_probe_id
_item_description.description
;
Pointer to '_NMR_spectrometer_probe.ID'
;
_item.name '_nmr_probe.nmr_spectrometer_probe_id'
_item.category_id 'nmr_probe'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectrometer_probe_citation
_category.description
;
Items in the NMR_spectrometer_probe_citation category provide pointers to the citations category.
;
_category.id 'nmr_spectrometer_probe_citation'
loop_
_category_key.name
'_nmr_spectrometer_probe_citation.citation_id'
'_nmr_spectrometer_probe_citation.entry_id'
'_nmr_spectrometer_probe_citation.nmr_spectrometer_probe_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_probe'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectrometer_probe_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_nmr_spectrometer_probe_citation.citation_id'
_item.category_id 'nmr_spectrometer_probe_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectrometer_probe_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_nmr_spectrometer_probe_citation.citation_label'
_item.category_id 'nmr_spectrometer_probe_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spectrometer_probe_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectrometer_probe_citation.entry_id'
_item.category_id 'nmr_spectrometer_probe_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectrometer_probe_citation.nmr_spectrometer_probe_id
_item_description.description
;
Pointer to '_NMR_spectrometer_probe.ID'
;
_item.name '_nmr_spectrometer_probe_citation.nmr_spectrometer_probe_id'
_item.category_id 'nmr_spectrometer_probe_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_experiment_list
_category.description
;
category description not available
;
_category.id 'experiment_list'
loop_
_category_key.name
'_experiment_list.entry_id'
'_experiment_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'experiment_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__experiment_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_experiment_list.sf_category'
_item.category_id 'experiment_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__experiment_list.sf_framecode
_item_description.description
;
Descriptive label used to uniquely identify the NMR experiment list within
the entry.
;
_item.name '_experiment_list.sf_framecode'
_item.category_id 'experiment_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__experiment_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_experiment_list.entry_id'
_item.category_id 'experiment_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__experiment_list.id
_item_description.description
;
Unique identifier for the list of NMR experiments.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_experiment_list.id' 'experiment_list' yes
'_experiment.experiment_list_id' 'experiment' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_experiment.experiment_list_id' '_experiment_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment_list.details
_item_description.description
;
?
;
_item.name '_experiment_list.details'
_item.category_id 'experiment_list'
_item.mandatory_code no
loop_
_item_examples.case
;
The structure was determined using a combination of NOE and residual dipolar coupling data.
;
stop_
_item_type.code 'text'
save_
save_experiment
_category.description
;
category description not available
;
_category.id 'experiment'
loop_
_category_key.name
'_experiment.id'
stop_
loop_
_category_group.id
'inclusive_group'
'experiment_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__experiment.id
_item_description.description
;
Unique identifier for each experiment listed.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_experiment.id' 'experiment' no
'_chem_shift_experiment.experiment_id' 'chem_shift_experiment' no
'_coupling_constant_experiment.experiment_id' 'coupling_constant_experiment' no
'_spectral_peak_list.experiment_id' 'spectral_peak_list' no
'_isotope_effect_experiment.experiment_id' 'isotope_effect_experiment' no
'_mol_interaction_diff_experiment.experiment_id' 'mol_interaction_diff_experiment' no
'_cs_anisotropy_experiment.experiment_id' 'cs_anisotropy_experiment' no
'_rdc_experiment.experiment_id' 'rdc_experiment' no
'_dipolar_coupling_experiment.experiment_id' 'dipolar_coupling_experiment' no
'_spectral_density_experiment.experiment_id' 'spectral_density_experiment' no
'_other_data_experiment.experiment_id' 'other_data_experiment' no
'_h_exch_rate_experiment.experiment_id' 'h_exch_rate_experiment' no
'_h_exch_protection_fact_experiment.experiment_id' 'h_exch_protection_fact_experiment' no
'_homonucl_noe_experiment.experiment_id' 'homonucl_noe_experiment' no
'_heteronucl_noe_experiment.experiment_id' 'heteronucl_noe_experiment' no
'_heteronucl_t1_experiment.experiment_id' 'heteronucl_t1_experiment' no
'_heteronucl_t1rho_experiment.experiment_id' 'heteronucl_t1rho_experiment' no
'_heteronucl_t2_experiment.experiment_id' 'heteronucl_t2_experiment' no
'_dipole_dipole_relax_experiment.experiment_id' 'dipole_dipole_relax_experiment' no
'_cross_correlation_dd_experiment.experiment_id' 'cross_correlation_dd_experiment' no
'_cross_correlation_d_csa_experiment.experiment_id' 'cross_correlation_d_csa_experiment' no
'_order_parameter_experiment.experiment_id' 'order_parameter_experiment' no
'_ph_titration_experiment.experiment_id' 'ph_titration_experiment' no
'_d_h_fract_factor_experiment.experiment_id' 'd_h_fract_factor_experiment' no
'_deduced_secd_struct_experiment.experiment_id' 'deduced_secd_struct_experiment' no
'_deduced_h_bond_experiment.experiment_id' 'deduced_h_bond_experiment' no
'_conformer_family_coord_set_expt.experiment_id' 'conformer_family_coord_set_expt' no
'_distance_constraint_expt.experiment_id' 'distance_constraint_expt' no
'_dist_constraint_value.source_experiment_id' 'dist_constraint_value' no
'_torsion_angle_constraints_expt.experiment_id' 'torsion_angle_constraints_expt' no
'_torsion_angle_constraint.source_experiment_id' 'torsion_angle_constraint' no
'_rdc_constraint_expt.experiment_id' 'rdc_constraint_expt' no
'_rdc_constraint.source_experiment_id' 'rdc_constraint' no
'_j_three_bond_constraint_expt.experiment_id' 'j_three_bond_constraint_expt' no
'_j_three_bond_constraint.source_experiment_id' 'j_three_bond_constraint' no
'_ca_cb_constraint_expt.experiment_id' 'ca_cb_constraint_expt' no
'_ca_cb_constraint.source_experiment_id' 'ca_cb_constraint' no
'_h_chem_shift_constraint_expt.experiment_id' 'h_chem_shift_constraint_expt' no
'_h_chem_shift_constraint.source_experiment_id' 'h_chem_shift_constraint' no
'_other_constraint_expt.experiment_id' 'other_constraint_expt' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_chem_shift_experiment.experiment_id' '_experiment.id'
'_coupling_constant_experiment.experiment_id' '_experiment.id'
'_spectral_peak_list.experiment_id' '_experiment.id'
'_isotope_effect_experiment.experiment_id' '_experiment.id'
'_mol_interaction_diff_experiment.experiment_id' '_experiment.id'
'_cs_anisotropy_experiment.experiment_id' '_experiment.id'
'_rdc_experiment.experiment_id' '_experiment.id'
'_dipolar_coupling_experiment.experiment_id' '_experiment.id'
'_spectral_density_experiment.experiment_id' '_experiment.id'
'_other_data_experiment.experiment_id' '_experiment.id'
'_h_exch_rate_experiment.experiment_id' '_experiment.id'
'_h_exch_protection_fact_experiment.experiment_id' '_experiment.id'
'_homonucl_noe_experiment.experiment_id' '_experiment.id'
'_heteronucl_noe_experiment.experiment_id' '_experiment.id'
'_heteronucl_t1_experiment.experiment_id' '_experiment.id'
'_heteronucl_t1rho_experiment.experiment_id' '_experiment.id'
'_heteronucl_t2_experiment.experiment_id' '_experiment.id'
'_dipole_dipole_relax_experiment.experiment_id' '_experiment.id'
'_cross_correlation_dd_experiment.experiment_id' '_experiment.id'
'_cross_correlation_d_csa_experiment.experiment_id' '_experiment.id'
'_order_parameter_experiment.experiment_id' '_experiment.id'
'_ph_titration_experiment.experiment_id' '_experiment.id'
'_d_h_fract_factor_experiment.experiment_id' '_experiment.id'
'_deduced_secd_struct_experiment.experiment_id' '_experiment.id'
'_deduced_h_bond_experiment.experiment_id' '_experiment.id'
'_conformer_family_coord_set_expt.experiment_id' '_experiment.id'
'_distance_constraint_expt.experiment_id' '_experiment.id'
'_dist_constraint_value.source_experiment_id' '_experiment.id'
'_torsion_angle_constraints_expt.experiment_id' '_experiment.id'
'_torsion_angle_constraint.source_experiment_id' '_experiment.id'
'_rdc_constraint_expt.experiment_id' '_experiment.id'
'_rdc_constraint.source_experiment_id' '_experiment.id'
'_j_three_bond_constraint_expt.experiment_id' '_experiment.id'
'_j_three_bond_constraint.source_experiment_id' '_experiment.id'
'_ca_cb_constraint_expt.experiment_id' '_experiment.id'
'_ca_cb_constraint.source_experiment_id' '_experiment.id'
'_h_chem_shift_constraint_expt.experiment_id' '_experiment.id'
'_h_chem_shift_constraint.source_experiment_id' '_experiment.id'
'_other_constraint_expt.experiment_id' '_experiment.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment.name
_item_description.description
;
Names for NMR experiments commonly found in the literature.
;
_item.name '_experiment.name'
_item.category_id 'experiment'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
1H-15N HSQC
;
stop_
_item_type.code 'line'
save_
save__experiment.raw_data_flag
_item_description.description
;
The value for this tag is a flag to indicate if time-domain (raw) NMR data
have been deposited for this experiment.
;
_item.name '_experiment.raw_data_flag'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
yes
;
stop_
_item_default.value 'no'
_item_type.code 'yes_no'
save_
save__experiment.nmr_spec_expt_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_experiment.nmr_spec_expt_id'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment.nmr_spec_expt_label
_item_description.description
;
Pointer to a saveframe of category 'NMR_spectrometer_expt'.
;
_item.name '_experiment.nmr_spec_expt_label'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__experiment.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_experiment.sample_id'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment.sample_label
_item_description.description
;
Pointer to a saveframe of category 'sample''.
;
_item.name '_experiment.sample_label'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
sample_1
;
stop_
_item_type.code 'line'
save_
save__experiment.sample_state
_item_description.description
;
?
;
_item.name '_experiment.sample_state'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
isotropic
;
stop_
_item_default.value 'isotropic'
_item_type.code 'line'
save_
save__experiment.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_experiment.sample_condition_list_id'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment.sample_condition_list_label
_item_description.description
;
Pointer to a saveframe of category 'sample_conditions'.
;
_item.name '_experiment.sample_condition_list_label'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
sample_conditions_1
;
stop_
_item_type.code 'line'
save_
save__experiment.nmr_spectrometer_id
_item_description.description
;
Pointer to '_NMR_spectrometer.ID'
;
_item.name '_experiment.nmr_spectrometer_id'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment.nmr_spectrometer_label
_item_description.description
;
Pointer to a saveframe of category 'NMR_spectrometer'.
;
_item.name '_experiment.nmr_spectrometer_label'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__experiment.nmr_spectral_processing_id
_item_description.description
;
Pointer to '_NMR_spectral_processing.ID'
;
_item.name '_experiment.nmr_spectral_processing_id'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__experiment.nmr_spectral_processing_label
_item_description.description
;
Pointer to a saveframe of category 'NMR_spectral_processing'.
;
_item.name '_experiment.nmr_spectral_processing_label'
_item.category_id 'experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__experiment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_experiment.entry_id'
_item.category_id 'experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__experiment.experiment_list_id
_item_description.description
;
Pointer to '_Experiment_list.ID'
;
_item.name '_experiment.experiment_list_id'
_item.category_id 'experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spec_expt
_category.description
;
category description not available
;
_category.id 'nmr_spec_expt'
loop_
_category_key.name
'_nmr_spec_expt.entry_id'
'_nmr_spec_expt.id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_expt'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spec_expt.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_nmr_spec_expt.sf_category'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spec_expt.sf_framecode
_item_description.description
;
Descriptive label used to uniquely identify the NMR experiment and its
parameters.
;
_item.name '_nmr_spec_expt.sf_framecode'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spec_expt.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spec_expt.entry_id'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spec_expt.id
_item_description.description
;
A value that uniquely identifies the NMR experiment from other NMR experiments
listed in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_nmr_spec_expt.id' 'nmr_spec_expt' yes
'_experiment.nmr_spec_expt_id' 'experiment' yes
'_nmr_experiment_file.nmr_spec_expt_id' 'nmr_experiment_file' yes
'_spectral_acq_param.nmr_spec_expt_id' 'spectral_acq_param' yes
'_recoupling_pulse_sequence.nmr_spec_expt_id' 'recoupling_pulse_sequence' yes
'_decoupling_pulse_sequence.nmr_spec_expt_id' 'decoupling_pulse_sequence' yes
'_nmr_experiment_citation.nmr_spec_expt_id' 'nmr_experiment_citation' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_experiment.nmr_spec_expt_id' '_nmr_spec_expt.id'
'_nmr_experiment_file.nmr_spec_expt_id' '_nmr_spec_expt.id'
'_spectral_acq_param.nmr_spec_expt_id' '_nmr_spec_expt.id'
'_recoupling_pulse_sequence.nmr_spec_expt_id' '_nmr_spec_expt.id'
'_decoupling_pulse_sequence.nmr_spec_expt_id' '_nmr_spec_expt.id'
'_nmr_experiment_citation.nmr_spec_expt_id' '_nmr_spec_expt.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spec_expt.name
_item_description.description
;
A commonly used name for the NMR experiment found in the literature.
;
_item.name '_nmr_spec_expt.name'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
HNCO; 1H15N HSQC
;
stop_
_item_type.code 'line'
save_
save__nmr_spec_expt.type
_item_description.description
;
The type of NMR experiment.
;
_item.name '_nmr_spec_expt.type'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
NOE ?
COSY ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_spec_expt.sample_volume
_item_description.description
;
Volume of the sample during data collection
;
_item.name '_nmr_spec_expt.sample_volume'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
300
;
stop_
_item_type.code 'float'
save_
save__nmr_spec_expt.sample_volume_units
_item_description.description
;
Provide the units appropriate for the sample volume.
;
_item.name '_nmr_spec_expt.sample_volume_units'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
uL ?
mL ?
stop_
loop_
_item_examples.case
;
uL
;
stop_
_item_default.value 'uL'
_item_type.code 'code'
save_
save__nmr_spec_expt.nmr_tube_type
_item_description.description
;
Type of NMR tube used to contain the sample during data acquisition.
;
_item.name '_nmr_spec_expt.nmr_tube_type'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'cylindrical microcell' ?
Shegami ?
'spherical microcell' ?
'standard cylindrical' ?
stop_
loop_
_item_examples.case
;
standard
;
stop_
_item_type.code 'line'
save_
save__nmr_spec_expt.sample_spinning_rate
_item_description.description
;
The spinning rate of the sample during data collection (in Hz).
;
_item.name '_nmr_spec_expt.sample_spinning_rate'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
20
;
stop_
_item_type.code 'float'
save_
save__nmr_spec_expt.sample_angle
_item_description.description
;
The angle of the sample relative to the external magnetic field.
;
_item.name '_nmr_spec_expt.sample_angle'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
54 degrees
;
stop_
_item_type.code 'float'
save_
save__nmr_spec_expt.nmr_spectrometer_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_nmr_spec_expt.nmr_spectrometer_id'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spec_expt.nmr_spectrometer_label
_item_description.description
;
Pointer to a saveframe of the category NMR_spectrometer.
;
_item.name '_nmr_spec_expt.nmr_spectrometer_label'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spec_expt.nmr_spectrometer_probe_id
_item_description.description
;
Pointer to '_NMR_spectrometer_probe.ID'
;
_item.name '_nmr_spec_expt.nmr_spectrometer_probe_id'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spec_expt.nmr_spectrometer_probe_label
_item_description.description
;
Pointer to a saveframe of the category NMR_spectrometer_probe.
;
_item.name '_nmr_spec_expt.nmr_spectrometer_probe_label'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spec_expt.carrier_freq_switch_time
_item_description.description
;
The time required to switch between carrier frequencies.
;
_item.name '_nmr_spec_expt.carrier_freq_switch_time'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__nmr_spec_expt.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_nmr_spec_expt.software_id'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spec_expt.software_label
_item_description.description
;
Pointer to a saveframe of the category software.
;
_item.name '_nmr_spec_expt.software_label'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spec_expt.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_nmr_spec_expt.method_id'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spec_expt.method_label
_item_description.description
;
Pointer to a saveframe of the category 'method'
;
_item.name '_nmr_spec_expt.method_label'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spec_expt.pulse_seq_accession_bmrb_code
_item_description.description
;
An accession code assigned by BMRB that uniquely identifies the NMR experiment
pulse sequence within the BMRB pulse sequence library.
;
_item.name '_nmr_spec_expt.pulse_seq_accession_bmrb_code'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spec_expt.details
_item_description.description
;
Summarize and provide details on what type of spectrometer was used, magnetic
field, how the data were recorded, and the information obtained from the data.
;
_item.name '_nmr_spec_expt.details'
_item.category_id 'nmr_spec_expt'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_nmr_experiment_file
_category.description
;
category description not available
;
_category.id 'nmr_experiment_file'
loop_
_category_key.name
'_nmr_experiment_file.name'
'_nmr_experiment_file.entry_id'
'_nmr_experiment_file.nmr_spec_expt_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_expt'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_experiment_file.name
_item_description.description
;
The name of the file containing information relevant to the NMR experiment.
Multiple files can be listed. These files might include the time-domain (raw)
data for the NMR experiment, the pulse sequence for the experiment, and parameters
for acquiring and processing the data.
;
_item.name '_nmr_experiment_file.name'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
1H15N_HSQC
;
stop_
_item_type.code 'line'
save_
save__nmr_experiment_file.type
_item_description.description
;
The type of time-domain file being deposited.
;
_item.name '_nmr_experiment_file.type'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'Pulse sequence image file' ?
'Pulse sequence' ?
'Time-domain (raw spectral data)' ?
'NMR experiment directory' ?
'Pulse field gradient' ?
stop_
loop_
_item_examples.case
;
NMR experiment directory
;
stop_
_item_type.code 'line'
save_
save__nmr_experiment_file.directory_path
_item_description.description
;
The directory path within the BMRB archive that must be followed to locate
listed NMR experiment file.
;
_item.name '_nmr_experiment_file.directory_path'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_experiment_file.byte_order
_item_description.description
;
How the bytes (usually 4, but sometimes 3, for example on AM spectrometers)
are arranged. Depends on the computer platform employed.
;
_item.name '_nmr_experiment_file.byte_order'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_experiment_file.bytes_per_data_point
_item_description.description
;
Number of bytes per data point. Most Sun, SGI, and Linux systems use 4
bytes ( of 8 bits each yielding a total of 32 bits) per point.
;
_item.name '_nmr_experiment_file.bytes_per_data_point'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_experiment_file.file_header_size
_item_description.description
;
Size in bytes of the file header associated with the raw unprocessed data.
;
_item.name '_nmr_experiment_file.file_header_size'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_experiment_file.record_header_size
_item_description.description
;
Size in bytes of the record header within the NMR experiment file.
;
_item.name '_nmr_experiment_file.record_header_size'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_experiment_file.record_trailer_size
_item_description.description
;
Size in bytes of the record trailer within the NMR experiment file.
;
_item.name '_nmr_experiment_file.record_trailer_size'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_experiment_file.compression_algorithm
_item_description.description
;
Algorithm used to compress the NMR experiment file.
;
_item.name '_nmr_experiment_file.compression_algorithm'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__nmr_experiment_file.details
_item_description.description
;
Additional information regarding the time-domain (raw) data file for this
NMR experiment.
;
_item.name '_nmr_experiment_file.details'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__nmr_experiment_file.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_experiment_file.entry_id'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_experiment_file.nmr_spec_expt_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_nmr_experiment_file.nmr_spec_expt_id'
_item.category_id 'nmr_experiment_file'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_spectral_acq_param
_category.description
;
category description not available
;
_category.id 'spectral_acq_param'
loop_
_category_key.name
'_spectral_acq_param.id'
'_spectral_acq_param.entry_id'
'_spectral_acq_param.nmr_spec_expt_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_expt'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spectral_acq_param.id
_item_description.description
;
A value that uniquely identifies the NMR spectral acquisition parameter
in the list.
;
_item.name '_spectral_acq_param.id'
_item.category_id 'spectral_acq_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_acq_param.acquisition_dimension_id
_item_description.description
;
A value that uniquely identifies the NMR spectral acquisition dimension
in the list.
;
_item.name '_spectral_acq_param.acquisition_dimension_id'
_item.category_id 'spectral_acq_param'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_acq_param.name
_item_description.description
;
For a specified acquisition dimension the type of nucleus and its isotope
detected in the experiment.
;
_item.name '_spectral_acq_param.name'
_item.category_id 'spectral_acq_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__spectral_acq_param.val
_item_description.description
;
Value for the NMR spectral acquisition parameter.
;
_item.name '_spectral_acq_param.val'
_item.category_id 'spectral_acq_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_acq_param.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_spectral_acq_param.entry_id'
_item.category_id 'spectral_acq_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_acq_param.nmr_spec_expt_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_spectral_acq_param.nmr_spec_expt_id'
_item.category_id 'spectral_acq_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_recoupling_pulse_sequence
_category.description
;
category description not available
;
_category.id 'recoupling_pulse_sequence'
loop_
_category_key.name
'_recoupling_pulse_sequence.name'
'_recoupling_pulse_sequence.time_period'
'_recoupling_pulse_sequence.entry_id'
'_recoupling_pulse_sequence.nmr_spec_expt_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_expt'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__recoupling_pulse_sequence.name
_item_description.description
;
Name for a solid-state recoupling pulse sequence.
;
_item.name '_recoupling_pulse_sequence.name'
_item.category_id 'recoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__recoupling_pulse_sequence.type
_item_description.description
;
Type of recoupling pulse sequence (homonuclear or heteronuclear).
;
_item.name '_recoupling_pulse_sequence.type'
_item.category_id 'recoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__recoupling_pulse_sequence.nucleus
_item_description.description
;
Atomic nucleus targeted by the recoupling pulse sequence.
;
_item.name '_recoupling_pulse_sequence.nucleus'
_item.category_id 'recoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__recoupling_pulse_sequence.time_period
_item_description.description
;
Specific time period during the full pulse sequence where the recoupling
pulse sequence is applied.
;
_item.name '_recoupling_pulse_sequence.time_period'
_item.category_id 'recoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__recoupling_pulse_sequence.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_recoupling_pulse_sequence.entry_id'
_item.category_id 'recoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__recoupling_pulse_sequence.nmr_spec_expt_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_recoupling_pulse_sequence.nmr_spec_expt_id'
_item.category_id 'recoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_decoupling_pulse_sequence
_category.description
;
category description not available
;
_category.id 'decoupling_pulse_sequence'
loop_
_category_key.name
'_decoupling_pulse_sequence.name'
'_decoupling_pulse_sequence.time_period'
'_decoupling_pulse_sequence.entry_id'
'_decoupling_pulse_sequence.nmr_spec_expt_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_expt'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__decoupling_pulse_sequence.name
_item_description.description
;
Name for a decoupling pulse sequence.
;
_item.name '_decoupling_pulse_sequence.name'
_item.category_id 'decoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__decoupling_pulse_sequence.time_period
_item_description.description
;
Specific time period during the full pulse sequence where the decoupling
pulse sequence is applied.
;
_item.name '_decoupling_pulse_sequence.time_period'
_item.category_id 'decoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__decoupling_pulse_sequence.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_decoupling_pulse_sequence.entry_id'
_item.category_id 'decoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__decoupling_pulse_sequence.nmr_spec_expt_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_decoupling_pulse_sequence.nmr_spec_expt_id'
_item.category_id 'decoupling_pulse_sequence'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_experiment_citation
_category.description
;
category description not available
;
_category.id 'nmr_experiment_citation'
loop_
_category_key.name
'_nmr_experiment_citation.citation_id'
'_nmr_experiment_citation.entry_id'
'_nmr_experiment_citation.nmr_spec_expt_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectrometer_expt'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_experiment_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_nmr_experiment_citation.citation_id'
_item.category_id 'nmr_experiment_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_experiment_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_nmr_experiment_citation.citation_label'
_item.category_id 'nmr_experiment_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_experiment_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_experiment_citation.entry_id'
_item.category_id 'nmr_experiment_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_experiment_citation.nmr_spec_expt_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_nmr_experiment_citation.nmr_spec_expt_id'
_item.category_id 'nmr_experiment_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectral_processing
_category.description
;
category description not available
;
_category.id 'nmr_spectral_processing'
loop_
_category_key.name
'_nmr_spectral_processing.entry_id'
'_nmr_spectral_processing.id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectral_processing'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectral_processing.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_nmr_spectral_processing.sf_category'
_item.category_id 'nmr_spectral_processing'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectral_processing.sf_framecode
_item_description.description
;
Descriptive label used to uniquely identify this set of NMR spectral processing
parameters.
;
_item.name '_nmr_spectral_processing.sf_framecode'
_item.category_id 'nmr_spectral_processing'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectral_processing.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectral_processing.entry_id'
_item.category_id 'nmr_spectral_processing'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectral_processing.id
_item_description.description
;
A value that uniquely identifies the set of spectral processing from other
sets of spectral processing parameters in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_nmr_spectral_processing.id' 'nmr_spectral_processing' yes
'_experiment.nmr_spectral_processing_id' 'experiment' yes
'_nmr_spectral_proc_software.nmr_spectral_processing_id' 'nmr_spectral_proc_software' yes
'_spectral_processing_param.nmr_spectral_processing_id' 'spectral_processing_param' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_experiment.nmr_spectral_processing_id' '_nmr_spectral_processing.id'
'_nmr_spectral_proc_software.nmr_spectral_processing_id' '_nmr_spectral_processing.id'
'_spectral_processing_param.nmr_spectral_processing_id' '_nmr_spectral_processing.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_nmr_spectral_proc_software
_category.description
;
Items in the NMR_spectral_proc_software category provide pointers to software saveframes where the software application(s) used to process the spectral data are described.
;
_category.id 'nmr_spectral_proc_software'
loop_
_category_key.name
'_nmr_spectral_proc_software.software_id'
'_nmr_spectral_proc_software.entry_id'
'_nmr_spectral_proc_software.nmr_spectral_processing_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectral_processing'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__nmr_spectral_proc_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_nmr_spectral_proc_software.software_id'
_item.category_id 'nmr_spectral_proc_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectral_proc_software.software_label
_item_description.description
;
Pointer to a saveframe of the category software.
;
_item.name '_nmr_spectral_proc_software.software_label'
_item.category_id 'nmr_spectral_proc_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spectral_proc_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_nmr_spectral_proc_software.method_id'
_item.category_id 'nmr_spectral_proc_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__nmr_spectral_proc_software.method_label
_item_description.description
;
Pointer to a saveframe of the category method.
;
_item.name '_nmr_spectral_proc_software.method_label'
_item.category_id 'nmr_spectral_proc_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__nmr_spectral_proc_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_nmr_spectral_proc_software.entry_id'
_item.category_id 'nmr_spectral_proc_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__nmr_spectral_proc_software.nmr_spectral_processing_id
_item_description.description
;
Pointer to '_NMR_spectral_processing.ID'
;
_item.name '_nmr_spectral_proc_software.nmr_spectral_processing_id'
_item.category_id 'nmr_spectral_proc_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_spectral_processing_param
_category.description
;
Items in the spectral_processing_param category describe the software parameters used in converting the raw spectral data into the fully processed spectrum.
;
_category.id 'spectral_processing_param'
loop_
_category_key.name
'_spectral_processing_param.id'
'_spectral_processing_param.entry_id'
'_spectral_processing_param.nmr_spectral_processing_id'
stop_
loop_
_category_group.id
'inclusive_group'
'nmr_spectral_processing'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spectral_processing_param.id
_item_description.description
;
A value that uniquely identifies the NMR spectral processing parameter
in the list.
;
_item.name '_spectral_processing_param.id'
_item.category_id 'spectral_processing_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_processing_param.processing_dimension_id
_item_description.description
;
The spectral dimension in which the processing parameter was applied.
;
_item.name '_spectral_processing_param.processing_dimension_id'
_item.category_id 'spectral_processing_param'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_processing_param.name
_item_description.description
;
Name for a NMR spectral processing parameter.
;
_item.name '_spectral_processing_param.name'
_item.category_id 'spectral_processing_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__spectral_processing_param.val
_item_description.description
;
Value for the NMR spectral processing parameter.
;
_item.name '_spectral_processing_param.val'
_item.category_id 'spectral_processing_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_processing_param.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_spectral_processing_param.entry_id'
_item.category_id 'spectral_processing_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_processing_param.nmr_spectral_processing_id
_item_description.description
;
Pointer to '_NMR_spectral_processing.ID'
;
_item.name '_spectral_processing_param.nmr_spectral_processing_id'
_item.category_id 'spectral_processing_param'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_computer
_category.description
;
Items in the computer category describe a computer.
;
_category.id 'computer'
loop_
_category_key.name
'_computer.entry_id'
'_computer.id'
stop_
loop_
_category_group.id
'inclusive_group'
'computer'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__computer.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_computer.sf_category'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__computer.sf_framecode
_item_description.description
;
A label that uniquely identifies the computer from other computers listed
in the entry.
;
_item.name '_computer.sf_framecode'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__computer.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_computer.entry_id'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__computer.id
_item_description.description
;
A value that uniquely identifies the computer from other computers listed
in the entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_computer.id' 'computer' yes
'_method.computer_id' 'method' yes
'_computer_citation.computer_id' 'computer_citation' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_method.computer_id' '_computer.id'
'_computer_citation.computer_id' '_computer.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__computer.details
_item_description.description
;
Text information describing the computer.
;
_item.name '_computer.details'
_item.category_id 'computer'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__computer.manufacturer
_item_description.description
;
Name of the company or other entity that built the Computer.
;
_item.name '_computer.manufacturer'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
Dell
;
stop_
_item_type.code 'line'
save_
save__computer.model
_item_description.description
;
The name or acronym used to describe the model of the computer.
;
_item.name '_computer.model'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
Latitude
;
stop_
_item_type.code 'line'
save_
save__computer.operating_system
_item_description.description
;
The operating system used on the computer.
;
_item.name '_computer.operating_system'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
Linux
;
stop_
_item_type.code 'line'
save_
save__computer.operating_system_version
_item_description.description
;
Version number or code for the computer operating system used.
;
_item.name '_computer.operating_system_version'
_item.category_id 'computer'
_item.mandatory_code yes
loop_
_item_examples.case
;
RedHat 7.2
;
stop_
_item_type.code 'line'
save_
save__computer.hardware_code
_item_description.description
;
Code assigned to the computer by the manufacturer that uniquely identifies
that computer from all others.
;
_item.name '_computer.hardware_code'
_item.category_id 'computer'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save_computer_citation
_category.description
;
Items in the computer_citation category provide pointers to the citation category.
;
_category.id 'computer_citation'
loop_
_category_key.name
'_computer_citation.citation_id'
'_computer_citation.entry_id'
'_computer_citation.computer_id'
stop_
loop_
_category_group.id
'inclusive_group'
'computer'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__computer_citation.citation_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_computer_citation.citation_id'
_item.category_id 'computer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__computer_citation.citation_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_computer_citation.citation_label'
_item.category_id 'computer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__computer_citation.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_computer_citation.entry_id'
_item.category_id 'computer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__computer_citation.computer_id
_item_description.description
;
Pointer to '_Computer.ID'
;
_item.name '_computer_citation.computer_id'
_item.category_id 'computer_citation'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_chem_shift_reference
_category.description
;
Items in the chem_shift_reference category define a set of chemical shift referencing parameters.
;
_category.id 'chem_shift_reference'
loop_
_category_key.name
'_chem_shift_reference.entry_id'
'_chem_shift_reference.id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_reference'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_shift_reference.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_chem_shift_reference.sf_category'
_item.category_id 'chem_shift_reference'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_reference.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this list of chemical shift
referencing parameters used in reporting assigned chemical shifts and other chemical
shift data.
;
_item.name '_chem_shift_reference.sf_framecode'
_item.category_id 'chem_shift_reference'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'chemical_shift_reference_1'
_item_type.code 'code'
save_
save__chem_shift_reference.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_shift_reference.entry_id'
_item.category_id 'chem_shift_reference'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_reference.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of chemical shift
reference values from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_chem_shift_reference.id' 'chem_shift_reference' yes
'_chem_shift_ref.chem_shift_reference_id' 'chem_shift_ref' yes
'_assigned_chem_shift_list.chem_shift_reference_id' 'assigned_chem_shift_list' yes
'_mol_interaction_chem_shift_diff.chem_shift_ref_set_id' 'mol_interaction_chem_shift_diff' yes
'_chem_shifts_calc_type.chem_shift_reference_id' 'chem_shifts_calc_type' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_chem_shift_ref.chem_shift_reference_id' '_chem_shift_reference.id'
'_assigned_chem_shift_list.chem_shift_reference_id' '_chem_shift_reference.id'
'_mol_interaction_chem_shift_diff.chem_shift_ref_set_id' '_chem_shift_reference.id'
'_chem_shifts_calc_type.chem_shift_reference_id' '_chem_shift_reference.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_reference.proton_shifts_flag
_item_description.description
;
Please indicate yes or no$ if you are depositing 1H chemical shifts.
;
_item.name '_chem_shift_reference.proton_shifts_flag'
_item.category_id 'chem_shift_reference'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
no ?
yes ?
'yes with IUPAC referencing' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_reference.carbon_shifts_flag
_item_description.description
;
Please indicate yes or no$ if you are depositing 13C chemical shifts.
;
_item.name '_chem_shift_reference.carbon_shifts_flag'
_item.category_id 'chem_shift_reference'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
no ?
yes ?
'yes with IUPAC referencing' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_reference.nitrogen_shifts_flag
_item_description.description
;
Please indicate yes or no$ if you are depositing 15N chemical shifts.
;
_item.name '_chem_shift_reference.nitrogen_shifts_flag'
_item.category_id 'chem_shift_reference'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
no ?
yes ?
'yes with IUPAC referencing' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_reference.phosphorus_shifts_flag
_item_description.description
;
Please indicate yes or no$ if you are depositing 31P chemical shifts.
;
_item.name '_chem_shift_reference.phosphorus_shifts_flag'
_item.category_id 'chem_shift_reference'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
no ?
yes ?
'yes with IUPAC referencing' ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'no'
_item_type.code 'line'
save_
save__chem_shift_reference.other_shifts_flag
_item_description.description
;
If you are depositing chemical shifts for a nuclei other than 1H, 13C,
15N, or 31P, select the 'yes' option otherwise select the 'no' option.
;
_item.name '_chem_shift_reference.other_shifts_flag'
_item.category_id 'chem_shift_reference'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
no ?
yes ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'no'
_item_type.code 'line'
save_
save__chem_shift_reference.details
_item_description.description
;
Text providing additional information regarding the reported chemical shift
referencing values or methods.
;
_item.name '_chem_shift_reference.details'
_item.category_id 'chem_shift_reference'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_chem_shift_ref
_category.description
;
Items in the chem_shift_ref category provide the chemical shift referencing values used in assigning the chemical shift positions for peaks in spectral peak lists and assigned atom chemical shifts.
;
_category.id 'chem_shift_ref'
loop_
_category_key.name
'_chem_shift_ref.atom_type'
'_chem_shift_ref.atom_isotope_number'
'_chem_shift_ref.mol_common_name'
'_chem_shift_ref.entry_id'
'_chem_shift_ref.chem_shift_reference_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_reference'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_shift_ref.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_chem_shift_ref.atom_type'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
H
;
stop_
_item_type.code 'code'
save_
save__chem_shift_ref.atom_isotope_number
_item_description.description
;
The isotope number for the chemical element defined by the tag '_Atom_type'
or any of its related tags.
;
_item.name '_chem_shift_ref.atom_isotope_number'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__chem_shift_ref.mol_common_name
_item_description.description
;
Common name or abbreviation used in the literature for the molecule used
as a chemical shift reference.
;
_item.name '_chem_shift_ref.mol_common_name'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
DSS
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.atom_group
_item_description.description
;
Group of atoms within a molecule whose chemical shift was used as the standard
chemical shift reference for the defined observed nuclei.
;
_item.name '_chem_shift_ref.atom_group'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
'methyl carbon' ?
'methyl carbons' ?
'methyl protons' ?
'methylene protons' ?
nitrogen ?
protons ?
stop_
loop_
_item_examples.case
;
'methyl protons'
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.concentration_val
_item_description.description
;
Concentration of the chemical shift reference compound in the external
reference sample.
;
_item.name '_chem_shift_ref.concentration_val'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'float'
save_
save__chem_shift_ref.concentration_units
_item_description.description
;
Units for the concentration value for the chemical shift reference compound.
;
_item.name '_chem_shift_ref.concentration_units'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
mM
;
stop_
_item_type.code 'code'
save_
save__chem_shift_ref.solvent
_item_description.description
;
Solvent used for the external reference sample.
;
_item.name '_chem_shift_ref.solvent'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
CHCL3
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.rank
_item_description.description
;
The rank of the chemical shift reference. A primary reference is the one
used in reporting the data. A secondary reference would be the compound in the
sample or used as an external reference.
;
_item.name '_chem_shift_ref.rank'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_ref.chem_shift_units
_item_description.description
;
Units for the chemical shift value assigned to the atoms of the chemical
shift reference.
;
_item.name '_chem_shift_ref.chem_shift_units'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
ppm 'parts per million'
Hz Hertz
stop_
loop_
_item_examples.case
;
ppm
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.chem_shift_val
_item_description.description
;
Value assigned to the chemical shift of the reference compound.
;
_item.name '_chem_shift_ref.chem_shift_val'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
0
;
stop_
_item_type.code 'float'
save_
save__chem_shift_ref.ref_method
_item_description.description
;
The reference method may be either direct (against a value measured with
a chemical compound) or indirect (calculated from chemical shift ratios).
;
_item.name '_chem_shift_ref.ref_method'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
internal ?
external ?
na ?
stop_
loop_
_item_examples.case
;
direct
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.ref_type
_item_description.description
;
The chemical shift reference may be either internal (the compound is located
in the sample) or external (the compound is in a container external to the sample).
;
_item.name '_chem_shift_ref.ref_type'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
direct ?
indirect ?
stop_
loop_
_item_examples.case
;
internal
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.indirect_shift_ratio
_item_description.description
;
The Chi value used in calculating the chemical shift referencing values
for nuclei that are referenced indirectly. The values used should be those recommended
by the IUPAC Taskforce on the deposition of data to the public databases
(Markley, et al. Pure and Appl. Chem. 70, 117-142 (1998).
;
_item.name '_chem_shift_ref.indirect_shift_ratio'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__chem_shift_ref.external_ref_sample_geometry
_item_description.description
;
The geometrical shape of the external reference sample.
;
_item.name '_chem_shift_ref.external_ref_sample_geometry'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
cylindrical ?
spherical ?
stop_
loop_
_item_examples.case
;
spherical; cylindrical; etc.
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.external_ref_loc
_item_description.description
;
External chemical shift references are defined as either located within
the sample (e.g., as a capillary) or external to the sample and are inserted into
the spectrometer before, after, or both before and after the sample containing
the molecular system studied in the entry.
;
_item.name '_chem_shift_ref.external_ref_loc'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
'in sample' ?
'outside sample' ?
stop_
loop_
_item_examples.case
;
internal
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.external_ref_axis
_item_description.description
;
The axis of the external chemical shift reference sample relative to the
static field (Bo) of the spectrometer.
;
_item.name '_chem_shift_ref.external_ref_axis'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
parallel ?
perpendicular ?
stop_
loop_
_item_examples.case
;
parallel; perpendicular
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.indirect_shift_ratio_cit_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_chem_shift_ref.indirect_shift_ratio_cit_id'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_ref.indirect_shift_ratio_cit_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_chem_shift_ref.indirect_shift_ratio_cit_label'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__chem_shift_ref.ref_correction_type
_item_description.description
;
If a correction value is applied to calculate the reported chemical shifts
the source of the correction (pH; temperature; etc.).
;
_item.name '_chem_shift_ref.ref_correction_type'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
temperature
;
stop_
_item_type.code 'line'
save_
save__chem_shift_ref.correction_val
_item_description.description
;
An uniform correction value that was applied because of an extenuating
circumstance such as data collection at an unusual temperature.
;
_item.name '_chem_shift_ref.correction_val'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
0.1
;
stop_
_item_type.code 'float'
save_
save__chem_shift_ref.correction_val_cit_id
_item_description.description
;
Pointer to '_Citation.ID'
;
_item.name '_chem_shift_ref.correction_val_cit_id'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_ref.correction_val_cit_label
_item_description.description
;
Pointer to a saveframe of the category citation.
;
_item.name '_chem_shift_ref.correction_val_cit_label'
_item.category_id 'chem_shift_ref'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__chem_shift_ref.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_shift_ref.entry_id'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_ref.chem_shift_reference_id
_item_description.description
;
Pointer to '_Chem_shift_reference.ID'
;
_item.name '_chem_shift_ref.chem_shift_reference_id'
_item.category_id 'chem_shift_ref'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assigned_chem_shift_list
_category.description
;
Items in the assigned_chem_shift_list category provide information about a list of reported assigned chemical shift values.
;
_category.id 'assigned_chem_shift_list'
loop_
_category_key.name
'_assigned_chem_shift_list.entry_id'
'_assigned_chem_shift_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'assigned_chemical_shifts'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assigned_chem_shift_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_assigned_chem_shift_list.sf_category'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assigned_chem_shift_list.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this list of reported assigned
chemical shifts.
;
_item.name '_assigned_chem_shift_list.sf_framecode'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'assigned_chem_shift_list_1'
_item_type.code 'code'
save_
save__assigned_chem_shift_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assigned_chem_shift_list.entry_id'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assigned_chem_shift_list.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of assigned chemical
shifts from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_assigned_chem_shift_list.id' 'assigned_chem_shift_list' yes
'_chem_shift_experiment.assigned_chem_shift_list_id' 'chem_shift_experiment' yes
'_systematic_chem_shift_offset.assigned_chem_shift_list_id' 'systematic_chem_shift_offset' yes
'_chem_shift_software.assigned_chem_shift_list_id' 'chem_shift_software' yes
'_atom_chem_shift.assigned_chem_shift_list_id' 'atom_chem_shift' yes
'_ambiguous_atom_chem_shift.assigned_chem_shift_list_id' 'ambiguous_atom_chem_shift' yes
'_assigned_peak_chem_shift.assigned_chem_shift_list_id' 'assigned_peak_chem_shift' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_chem_shift_experiment.assigned_chem_shift_list_id' '_assigned_chem_shift_list.id'
'_systematic_chem_shift_offset.assigned_chem_shift_list_id' '_assigned_chem_shift_list.id'
'_chem_shift_software.assigned_chem_shift_list_id' '_assigned_chem_shift_list.id'
'_atom_chem_shift.assigned_chem_shift_list_id' '_assigned_chem_shift_list.id'
'_ambiguous_atom_chem_shift.assigned_chem_shift_list_id' '_assigned_chem_shift_list.id'
'_assigned_peak_chem_shift.assigned_chem_shift_list_id' '_assigned_chem_shift_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_chem_shift_list.data_file_name
_item_description.description
;
The name of the file submitted with this depostion that contains the quantitative
data for this saveframe.
;
_item.name '_assigned_chem_shift_list.data_file_name'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assigned_chem_shift_list.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_assigned_chem_shift_list.sample_condition_list_id'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_chem_shift_list.sample_condition_list_label
_item_description.description
;
Pointer to a saveframe of category sample_conditions.
;
_item.name '_assigned_chem_shift_list.sample_condition_list_label'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__assigned_chem_shift_list.chem_shift_reference_id
_item_description.description
;
Pointer to '_Chem_shift_reference.ID'
;
_item.name '_assigned_chem_shift_list.chem_shift_reference_id'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_chem_shift_list.chem_shift_reference_label
_item_description.description
;
Pointer to a saveframe of category chem_shift_reference.
;
_item.name '_assigned_chem_shift_list.chem_shift_reference_label'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__assigned_chem_shift_list.chem_shift_1h_err
_item_description.description
;
The value assigned as the error for all 1H chemical shifts reported in
the saveframe. The value reported for this tag will be inserted during annotation
into the assigned chemical shift error column in the table of assigned chemical
shifts.
;
_item.name '_assigned_chem_shift_list.chem_shift_1h_err'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
0.01
;
stop_
_item_type.code 'float'
save_
save__assigned_chem_shift_list.chem_shift_13c_err
_item_description.description
;
The value assigned as the error for all 13C chemical shifts reported in
the saveframe. The value reported for this tag will be inserted during annotation
into the assigned chemical shift error column in the table of assigned chemical
shifts.
;
_item.name '_assigned_chem_shift_list.chem_shift_13c_err'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
0.1
;
stop_
_item_type.code 'float'
save_
save__assigned_chem_shift_list.chem_shift_15n_err
_item_description.description
;
The value assigned as the error for all 15N chemical shifts reported in
the saveframe. The value reported for this tag will be inserted during annotation
into the assigned chemical shift error column in the table of assigned chemical
shifts.
;
_item.name '_assigned_chem_shift_list.chem_shift_15n_err'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
0.2
;
stop_
_item_type.code 'float'
save_
save__assigned_chem_shift_list.chem_shift_31p_err
_item_description.description
;
The value assigned as the error for all 31P chemical shifts reported in
the saveframe. The value reported for this tag will be inserted during annotation
into the assigned chemical shift error column in the table of assigned chemical
shifts.
;
_item.name '_assigned_chem_shift_list.chem_shift_31p_err'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
0.1
;
stop_
_item_type.code 'float'
save_
save__assigned_chem_shift_list.chem_shift_2h_err
_item_description.description
;
The value assigned as the error for all 2H chemical shifts reported in
the saveframe. The value reported for this tag will be inserted during annotation
into the assigned chemical shift error column in the table of assigned chemical
shifts.
;
_item.name '_assigned_chem_shift_list.chem_shift_2h_err'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
0.01
;
stop_
_item_type.code 'float'
save_
save__assigned_chem_shift_list.chem_shift_19f_err
_item_description.description
;
The value assigned as the error for all 19F chemical shifts reported in
the saveframe. The value reported for this tag will be inserted during annotation
into the assigned chemical shift error column in the table of assigned chemical
shifts.
;
_item.name '_assigned_chem_shift_list.chem_shift_19f_err'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
0.01
;
stop_
_item_type.code 'float'
save_
save__assigned_chem_shift_list.error_derivation_method
_item_description.description
;
Method used to derive the estimated error in the reported chemical shifts.
;
_item.name '_assigned_chem_shift_list.error_derivation_method'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assigned_chem_shift_list.details
_item_description.description
;
Text describing the reported assigned chemical shifts.
;
_item.name '_assigned_chem_shift_list.details'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assigned_chem_shift_list.text_data_format
_item_description.description
;
The name of the data format used to represent the assigned chemical shifts
as ASCII text in the '.Text_data' tag.
;
_item.name '_assigned_chem_shift_list.text_data_format'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__assigned_chem_shift_list.text_data
_item_description.description
;
A set of assigned chemical shift data in a format as ASCII text.
;
_item.name '_assigned_chem_shift_list.text_data'
_item.category_id 'assigned_chem_shift_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_chem_shift_experiment
_category.description
;
Items in the chem_shift_experiment category provide pointers to the NMR experiments and samples used to collect the data for a set of reported assigned chemical shifts.
;
_category.id 'chem_shift_experiment'
loop_
_category_key.name
'_chem_shift_experiment.sample_id'
'_chem_shift_experiment.sample_state'
'_chem_shift_experiment.entry_id'
'_chem_shift_experiment.assigned_chem_shift_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assigned_chemical_shifts'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_shift_experiment.experiment_id
_item_description.description
;
?
;
_item.name '_chem_shift_experiment.experiment_id'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_experiment.experiment_name
_item_description.description
;
?
;
_item.name '_chem_shift_experiment.experiment_name'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_experiment.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_chem_shift_experiment.sample_id'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_experiment.sample_label
_item_description.description
;
Pointer to a saveframe of category sample.
;
_item.name '_chem_shift_experiment.sample_label'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__chem_shift_experiment.sample_state
_item_description.description
;
Physical state of the sample either anisotropic or isotropic.
;
_item.name '_chem_shift_experiment.sample_state'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
isotropic ?
anisotropic ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'isotropic'
_item_type.code 'line'
save_
save__chem_shift_experiment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_shift_experiment.entry_id'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_experiment.assigned_chem_shift_list_id
_item_description.description
;
Pointer to '_Assigned_chem_shift_list.ID'
;
_item.name '_chem_shift_experiment.assigned_chem_shift_list_id'
_item.category_id 'chem_shift_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_systematic_chem_shift_offset
_category.description
;
Items in the systematic_chem_shift_offset category define chemical shift offsets that systematically affect all chemical shifts in a set of assigned chemical shifts for specific nuclei.
;
_category.id 'systematic_chem_shift_offset'
loop_
_category_key.name
'_systematic_chem_shift_offset.type'
'_systematic_chem_shift_offset.entry_id'
'_systematic_chem_shift_offset.assigned_chem_shift_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assigned_chemical_shifts'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__systematic_chem_shift_offset.type
_item_description.description
;
The kind of chemical shift offset that should be applied to all chemical
shifts observed for a specific type of atom.
;
_item.name '_systematic_chem_shift_offset.type'
_item.category_id 'systematic_chem_shift_offset'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
TROSY effect
;
stop_
_item_type.code 'line'
save_
save__systematic_chem_shift_offset.atom_type
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_systematic_chem_shift_offset.atom_type'
_item.category_id 'systematic_chem_shift_offset'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
? ?
stop_
loop_
_item_examples.case
;
N
;
stop_
_item_type.code 'code'
save_
save__systematic_chem_shift_offset.val
_item_description.description
;
Chemical shift value that has been applied to all of the reported chemical
shifts to bring their values in line with values expected to be observed for
the chemical shift referencing that was used.
;
_item.name '_systematic_chem_shift_offset.val'
_item.category_id 'systematic_chem_shift_offset'
_item.mandatory_code yes
loop_
_item_examples.case
;
0.75
;
stop_
_item_type.code 'float'
save_
save__systematic_chem_shift_offset.val_err
_item_description.description
;
Error in the reported chemical shift offset value used.
;
_item.name '_systematic_chem_shift_offset.val_err'
_item.category_id 'systematic_chem_shift_offset'
_item.mandatory_code yes
loop_
_item_examples.case
;
0.0067
;
stop_
_item_type.code 'float'
save_
save__systematic_chem_shift_offset.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_systematic_chem_shift_offset.entry_id'
_item.category_id 'systematic_chem_shift_offset'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__systematic_chem_shift_offset.assigned_chem_shift_list_id
_item_description.description
;
Pointer to '_Assigned_chem_shift_list.ID'
;
_item.name '_systematic_chem_shift_offset.assigned_chem_shift_list_id'
_item.category_id 'systematic_chem_shift_offset'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_chem_shift_software
_category.description
;
Items in the chem_shift_software category provide pointers to the software category and methods category.
;
_category.id 'chem_shift_software'
loop_
_category_key.name
'_chem_shift_software.software_id'
'_chem_shift_software.entry_id'
'_chem_shift_software.assigned_chem_shift_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assigned_chemical_shifts'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_shift_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_chem_shift_software.software_id'
_item.category_id 'chem_shift_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_software.software_label
_item_description.description
;
Pointer to a saveframe of category software.
;
_item.name '_chem_shift_software.software_label'
_item.category_id 'chem_shift_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__chem_shift_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_chem_shift_software.method_id'
_item.category_id 'chem_shift_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_software.method_label
_item_description.description
;
Pointer to a saveframe of category method.
;
_item.name '_chem_shift_software.method_label'
_item.category_id 'chem_shift_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__chem_shift_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_shift_software.entry_id'
_item.category_id 'chem_shift_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_software.assigned_chem_shift_list_id
_item_description.description
;
Pointer to '_Assigned_chem_shift_list.ID'
;
_item.name '_chem_shift_software.assigned_chem_shift_list_id'
_item.category_id 'chem_shift_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_atom_chem_shift
_category.description
;
Items in the atom_chem_shift category describe the chemical shift values assigned to specific atoms in a molecular assembly.
;
_category.id 'atom_chem_shift'
loop_
_category_key.name
'_atom_chem_shift.id'
'_atom_chem_shift.entry_id'
'_atom_chem_shift.assigned_chem_shift_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assigned_chemical_shifts'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__atom_chem_shift.id
_item_description.description
;
An integer value that is a unique identifier for the assigned chemical
shift value value.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_atom_chem_shift.id' 'atom_chem_shift' yes
'_ambiguous_atom_chem_shift.atom_chem_shift_id' 'ambiguous_atom_chem_shift' yes
'_assigned_peak_chem_shift.atom_chem_shift_id' 'assigned_peak_chem_shift' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_ambiguous_atom_chem_shift.atom_chem_shift_id' '_atom_chem_shift.id'
'_assigned_peak_chem_shift.atom_chem_shift_id' '_atom_chem_shift.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_atom_chem_shift.assembly_atom_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_atom_chem_shift.entity_assembly_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_atom_chem_shift.entity_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_atom_chem_shift.comp_index_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_atom_chem_shift.seq_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_atom_chem_shift.comp_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_atom_chem_shift.atom_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__atom_chem_shift.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_atom_chem_shift.atom_type'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.atom_isotope_number
_item_description.description
;
Isotope number for the specified atom.
;
_item.name '_atom_chem_shift.atom_isotope_number'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.val
_item_description.description
;
Assigned chemical shift value
;
_item.name '_atom_chem_shift.val'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__atom_chem_shift.val_err
_item_description.description
;
Estimated or measured error in the assigned chemical shift value.
;
_item.name '_atom_chem_shift.val_err'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__atom_chem_shift.assign_fig_of_merit
_item_description.description
;
Figure of merit for the assignment of the atom to the reported chemical
shift value.
;
_item.name '_atom_chem_shift.assign_fig_of_merit'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__atom_chem_shift.ambiguity_code
_item_description.description
;
Ambiguity codes are used to define chemical shifts that have not been assigned
to specific atoms in the molecule studied. Ambiguity in chemical shifts
may exist at several different levels, stereospecific ambiguity, intra and inter
residue ambiguities, etc.
;
_item.name '_atom_chem_shift.ambiguity_code'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_enumeration.value
_item_enumeration.detail
1 ?
2 ?
3 ?
4 ?
5 ?
9 ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'uchar3'
save_
save__atom_chem_shift.occupancy
_item_description.description
;
Where multiple chemical shift values are assigned to the same atom, the
estimated percent of the molecules with the assigned chemical shift.
;
_item.name '_atom_chem_shift.occupancy'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.resonance_id
_item_description.description
;
Pointer to '_Resonance.ID'
;
_item.name '_atom_chem_shift.resonance_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__atom_chem_shift.auth_seq_id
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_atom_chem_shift.auth_seq_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
-3
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.auth_comp_id
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_atom_chem_shift.auth_comp_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
DPN
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.auth_atom_id
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_atom_chem_shift.auth_atom_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_atom_chem_shift.entry_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__atom_chem_shift.assigned_chem_shift_list_id
_item_description.description
;
Pointer to '_Assigned_chem_shift_list.ID'
;
_item.name '_atom_chem_shift.assigned_chem_shift_list_id'
_item.category_id 'atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_ambiguous_atom_chem_shift
_category.description
;
Items in the ambiguous_atom_chem_shift category define how ambiguous assigned chemical shifts from the atom_chem_shift category should be grouped.
;
_category.id 'ambiguous_atom_chem_shift'
loop_
_category_key.name
'_ambiguous_atom_chem_shift.ambiguous_shift_set_id'
'_ambiguous_atom_chem_shift.entry_id'
'_ambiguous_atom_chem_shift.assigned_chem_shift_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'assigned_chemical_shifts'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__ambiguous_atom_chem_shift.ambiguous_shift_set_id
_item_description.description
;
An integer value that defines a set of chemical shifts that form a mutually
ambiguous group. For ambiguity codes of 4 or 5, various combinations of assigned
chemical shifts may form sets where the chemical shift assignments are not
specifically known, but it is known that the chemical shifts belong to one atom
in the set.
;
_item.name '_ambiguous_atom_chem_shift.ambiguous_shift_set_id'
_item.category_id 'ambiguous_atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__ambiguous_atom_chem_shift.atom_chem_shift_id
_item_description.description
;
Pointer to '_Atom_chem_shift.ID'
;
_item.name '_ambiguous_atom_chem_shift.atom_chem_shift_id'
_item.category_id 'ambiguous_atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__ambiguous_atom_chem_shift.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_ambiguous_atom_chem_shift.entry_id'
_item.category_id 'ambiguous_atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__ambiguous_atom_chem_shift.assigned_chem_shift_list_id
_item_description.description
;
Pointer to '_Assigned_chem_shift_list.ID'
;
_item.name '_ambiguous_atom_chem_shift.assigned_chem_shift_list_id'
_item.category_id 'ambiguous_atom_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_coupling_constant_list
_category.description
;
Items in the coupling_constant_list category provide information about a list of reported scalar coupling constant values.
;
_category.id 'coupling_constant_list'
loop_
_category_key.name
'_coupling_constant_list.entry_id'
'_coupling_constant_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'coupling_constants'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__coupling_constant_list.sf_category
_item_description.description
;
Category assigned to the information in the saveframe.
;
_item.name '_coupling_constant_list.sf_category'
_item.category_id 'coupling_constant_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant_list.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this list of reported coupling
constants..
;
_item.name '_coupling_constant_list.sf_framecode'
_item.category_id 'coupling_constant_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'coupling_constant_list_1'
_item_type.code 'code'
save_
save__coupling_constant_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_coupling_constant_list.entry_id'
_item.category_id 'coupling_constant_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant_list.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of scalar coupling
constant values from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_coupling_constant_list.id' 'coupling_constant_list' yes
'_coupling_constant_experiment.coupling_constant_list_id' 'coupling_constant_experiment' yes
'_coupling_constant_software.coupling_constant_list_id' 'coupling_constant_software' yes
'_coupling_constant.coupling_constant_list_id' 'coupling_constant' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_coupling_constant_experiment.coupling_constant_list_id' '_coupling_constant_list.id'
'_coupling_constant_software.coupling_constant_list_id' '_coupling_constant_list.id'
'_coupling_constant.coupling_constant_list_id' '_coupling_constant_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant_list.data_file_name
_item_description.description
;
The name of the file submitted with this depostion that contains the quantitative
data for this saveframe.
;
_item.name '_coupling_constant_list.data_file_name'
_item.category_id 'coupling_constant_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__coupling_constant_list.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_coupling_constant_list.sample_condition_list_id'
_item.category_id 'coupling_constant_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant_list.sample_condition_list_label
_item_description.description
;
Pointer to a saveframe of the category sample_conditions.
;
_item.name '_coupling_constant_list.sample_condition_list_label'
_item.category_id 'coupling_constant_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__coupling_constant_list.spectrometer_frequency_1h
_item_description.description
;
The operating proton frequency in MHz of the NMR spectrometer used to collect
the data.
;
_item.name '_coupling_constant_list.spectrometer_frequency_1h'
_item.category_id 'coupling_constant_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
600.1283731
;
stop_
_item_type.code 'float'
save_
save__coupling_constant_list.details
_item_description.description
;
Text describing the reported coupling constants.
;
_item.name '_coupling_constant_list.details'
_item.category_id 'coupling_constant_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__coupling_constant_list.text_data_format
_item_description.description
;
The data format used to represent the coupling constant data as ASCII text
in the text block that is the value to the '_Assigned_chem_shift.Text_data' tag.
;
_item.name '_coupling_constant_list.text_data_format'
_item.category_id 'coupling_constant_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__coupling_constant_list.text_data
_item_description.description
;
A set of scalar coupling constant data formatted as ASCII text.
;
_item.name '_coupling_constant_list.text_data'
_item.category_id 'coupling_constant_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_coupling_constant_experiment
_category.description
;
Items in the coupling_constant_experiment category provide pointers to the NMR experiments and samples used to collect the data for a set of reported scalar coupling constants.
;
_category.id 'coupling_constant_experiment'
loop_
_category_key.name
'_coupling_constant_experiment.experiment_id'
'_coupling_constant_experiment.sample_id'
'_coupling_constant_experiment.sample_state'
'_coupling_constant_experiment.entry_id'
'_coupling_constant_experiment.coupling_constant_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'coupling_constants'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__coupling_constant_experiment.experiment_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_coupling_constant_experiment.experiment_id'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant_experiment.experiment_name
_item_description.description
;
Pointer to a saveframe of the category NMR spectrometer experiment.
;
_item.name '_coupling_constant_experiment.experiment_name'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__coupling_constant_experiment.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_coupling_constant_experiment.sample_id'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant_experiment.sample_label
_item_description.description
;
Pointer to a saveframe of the category sample.
;
_item.name '_coupling_constant_experiment.sample_label'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__coupling_constant_experiment.sample_state
_item_description.description
;
Physical state of the sample either anisotropic or isotropic.
;
_item.name '_coupling_constant_experiment.sample_state'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
isotropic ?
anisotropic ?
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'isotropic'
_item_type.code 'line'
save_
save__coupling_constant_experiment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_coupling_constant_experiment.entry_id'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant_experiment.coupling_constant_list_id
_item_description.description
;
Pointer to '_Coupling_constant_list.ID'
;
_item.name '_coupling_constant_experiment.coupling_constant_list_id'
_item.category_id 'coupling_constant_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_coupling_constant_software
_category.description
;
Items in the coupling_constant_software category provide pointers to the software category and methods category where descriptions of software applications and methods can be found.
;
_category.id 'coupling_constant_software'
loop_
_category_key.name
'_coupling_constant_software.software_id'
'_coupling_constant_software.entry_id'
'_coupling_constant_software.coupling_constant_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'coupling_constants'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__coupling_constant_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_coupling_constant_software.software_id'
_item.category_id 'coupling_constant_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant_software.software_label
_item_description.description
;
Pointer to a saveframe of the category software.
;
_item.name '_coupling_constant_software.software_label'
_item.category_id 'coupling_constant_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__coupling_constant_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_coupling_constant_software.method_id'
_item.category_id 'coupling_constant_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant_software.method_label
_item_description.description
;
Pointer to a saveframe of the category method.
;
_item.name '_coupling_constant_software.method_label'
_item.category_id 'coupling_constant_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__coupling_constant_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_coupling_constant_software.entry_id'
_item.category_id 'coupling_constant_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant_software.coupling_constant_list_id
_item_description.description
;
Pointer to '_Coupling_constant_list.ID'
;
_item.name '_coupling_constant_software.coupling_constant_list_id'
_item.category_id 'coupling_constant_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_coupling_constant
_category.description
;
Items in the coupling_constant category describe the scalar coupling constants values assigned to specific atoms in a molecular assembly.
;
_category.id 'coupling_constant'
loop_
_category_key.name
'_coupling_constant.id'
'_coupling_constant.entry_id'
'_coupling_constant.coupling_constant_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'coupling_constants'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__coupling_constant.id
_item_description.description
;
An integer value that is a unique identifier for the coupling constant value.
;
_item.name '_coupling_constant.id'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.code
_item_description.description
;
A code that defines the atoms involved in the coupling constant and the
number of bonds between the named atoms. The code is generated on the basis of
the standard nomenclature for coupling constants used in the NMR community.
;
_item.name '_coupling_constant.code'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__coupling_constant.assembly_atom_id_1
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_coupling_constant.assembly_atom_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.entity_assembly_id_1
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_coupling_constant.entity_assembly_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.entity_id_1
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_coupling_constant.entity_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.comp_index_id_1
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_coupling_constant.comp_index_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.seq_id_1
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_coupling_constant.seq_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.comp_id_1
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_coupling_constant.comp_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.atom_id_1
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_coupling_constant.atom_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__coupling_constant.atom_type_1
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_coupling_constant.atom_type_1'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.ambiguity_code_1
_item_description.description
;
A code indicating the presence of ambiguity in the assignment of the atom
to the coupling constant value. This type of ambiguity can arise for geminal
groups like the glycine alpha protons and other methylene groups.
;
_item.name '_coupling_constant.ambiguity_code_1'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.assembly_atom_id_2
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_coupling_constant.assembly_atom_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.entity_assembly_id_2
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_coupling_constant.entity_assembly_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.entity_id_2
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_coupling_constant.entity_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.comp_index_id_2
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_coupling_constant.comp_index_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.seq_id_2
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_coupling_constant.seq_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.comp_id_2
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_coupling_constant.comp_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.atom_id_2
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_coupling_constant.atom_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__coupling_constant.atom_type_2
_item_description.description
;
Standard symbol used to define the atom element type.
;
_item.name '_coupling_constant.atom_type_2'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.ambiguity_code_2
_item_description.description
;
A code indicating the presence of ambiguity in the assignment of the atom
to the coupling constant value. This type of ambiguity can arise for geminal
groups like the glycine alpha protons and other methylene groups.
;
_item.name '_coupling_constant.ambiguity_code_2'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.val
_item_description.description
;
Scalar coupling constant value
;
_item.name '_coupling_constant.val'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__coupling_constant.val_min
_item_description.description
;
Minimum estimated value for a scalar coupling constant when a specific
defined value cannot be obtained.
;
_item.name '_coupling_constant.val_min'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__coupling_constant.val_max
_item_description.description
;
Maximum estimated value for a scalar coupling constant when a specific
value cannot be obtained.
;
_item.name '_coupling_constant.val_max'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__coupling_constant.val_err
_item_description.description
;
Estimated or measured error in the scalar coupling constant value.
;
_item.name '_coupling_constant.val_err'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__coupling_constant.resonance_id_1
_item_description.description
;
?
;
_item.name '_coupling_constant.resonance_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.resonance_id_2
_item_description.description
;
?
;
_item.name '_coupling_constant.resonance_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__coupling_constant.auth_seq_id_1
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_coupling_constant.auth_seq_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
-3
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.auth_comp_id_1
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_coupling_constant.auth_comp_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
DPN
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.auth_atom_id_1
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_coupling_constant.auth_atom_id_1'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.auth_seq_id_2
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_coupling_constant.auth_seq_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
-3
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.auth_comp_id_2
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_coupling_constant.auth_comp_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
DPN
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.auth_atom_id_2
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_coupling_constant.auth_atom_id_2'
_item.category_id 'coupling_constant'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_coupling_constant.entry_id'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__coupling_constant.coupling_constant_list_id
_item_description.description
;
Pointer to '_Coupling_constant_list.ID'
;
_item.name '_coupling_constant.coupling_constant_list_id'
_item.category_id 'coupling_constant'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_spectral_peak_list
_category.description
;
Items in the spectral_peak_list category provide information about a list of reported spectral peak characteristic values.
;
_category.id 'spectral_peak_list'
loop_
_category_key.name
'_spectral_peak_list.entry_id'
'_spectral_peak_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spectral_peak_list.sf_category
_item_description.description
;
Category definition for the information content of the saveframe
;
_item.name '_spectral_peak_list.sf_category'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_peak_list.sf_framecode
_item_description.description
;
A descriptive label that uniquely identifies this list of spectral peaks.
;
_item.name '_spectral_peak_list.sf_framecode'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'spectral_peak_list_1'
_item_type.code 'code'
save_
save__spectral_peak_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_spectral_peak_list.entry_id'
_item.category_id 'spectral_peak_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_peak_list.id
_item_description.description
;
Spectral peak list ID
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_spectral_peak_list.id' 'spectral_peak_list' yes
'_spectral_dim.spectral_peak_list_id' 'spectral_dim' yes
'_spectral_peak_software.spectral_peak_list_id' 'spectral_peak_software' yes
'_peak.spectral_peak_list_id' 'peak' yes
'_peak_general_char.spectral_peak_list_id' 'peak_general_char' yes
'_peak_char.spectral_peak_list_id' 'peak_char' yes
'_peak_contribution.spectral_peak_list_id' 'peak_contribution' yes
'_assigned_peak_chem_shift.spectral_peak_list_id' 'assigned_peak_chem_shift' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_spectral_dim.spectral_peak_list_id' '_spectral_peak_list.id'
'_spectral_peak_software.spectral_peak_list_id' '_spectral_peak_list.id'
'_peak.spectral_peak_list_id' '_spectral_peak_list.id'
'_peak_general_char.spectral_peak_list_id' '_spectral_peak_list.id'
'_peak_char.spectral_peak_list_id' '_spectral_peak_list.id'
'_peak_contribution.spectral_peak_list_id' '_spectral_peak_list.id'
'_assigned_peak_chem_shift.spectral_peak_list_id' '_spectral_peak_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_list.data_file_name
_item_description.description
;
The name of the file submitted with this depostion that contains the quantitative
data for this saveframe.
;
_item.name '_spectral_peak_list.data_file_name'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__spectral_peak_list.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_spectral_peak_list.sample_id'
_item.category_id 'spectral_peak_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_list.sample_label
_item_description.description
;
Pointer to a saveframe of the category 'sample'
;
_item.name '_spectral_peak_list.sample_label'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__spectral_peak_list.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_spectral_peak_list.sample_condition_list_id'
_item.category_id 'spectral_peak_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_list.sample_condition_list_label
_item_description.description
;
The label for the set of experimental sample conditions used to collect
the NMR spectrum from which the peak list originated.
;
_item.name '_spectral_peak_list.sample_condition_list_label'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__spectral_peak_list.experiment_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_spectral_peak_list.experiment_id'
_item.category_id 'spectral_peak_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_list.experiment_name
_item_description.description
;
Pointer to a saveframe of the category 'NMR_spectrometer_expt'
;
_item.name '_spectral_peak_list.experiment_name'
_item.category_id 'spectral_peak_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__spectral_peak_list.number_of_spectral_dimensions
_item_description.description
;
Number of dimension in the spectrum from which the peak list was extracted.
;
_item.name '_spectral_peak_list.number_of_spectral_dimensions'
_item.category_id 'spectral_peak_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_list.details
_item_description.description
;
Text describing the reported list of spectral peaks.
;
_item.name '_spectral_peak_list.details'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__spectral_peak_list.text_data_format
_item_description.description
;
The data format used to represent the spectral peak data as ASCII text
in the text block that is the value to the '_Assigned_chem_shift.Text_data' tag.
;
_item.name '_spectral_peak_list.text_data_format'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__spectral_peak_list.text_data
_item_description.description
;
A set of spectral peak data formatted as ASCII text.
;
_item.name '_spectral_peak_list.text_data'
_item.category_id 'spectral_peak_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_spectral_dim
_category.description
;
Items in the spectral_dim category describe the parameters of each dimension in the NMR experiment used to generate the spectral peak list.
;
_category.id 'spectral_dim'
loop_
_category_key.name
'_spectral_dim.id'
'_spectral_dim.atom_type'
'_spectral_dim.spectral_region'
'_spectral_dim.entry_id'
'_spectral_dim.spectral_peak_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spectral_dim.id
_item_description.description
;
An integer value that specifies the dimension of a multidimensional NMR
spectrum.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_spectral_dim.id' 'spectral_dim' yes
'_peak_char.spectral_dim_id' 'peak_char' yes
'_assigned_peak_chem_shift.spectral_dim_id' 'assigned_peak_chem_shift' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_peak_char.spectral_dim_id' '_spectral_dim.id'
'_assigned_peak_chem_shift.spectral_dim_id' '_spectral_dim.id'
stop_
loop_
_item_examples.case
;
2
;
stop_
_item_type.code 'int'
save_
save__spectral_dim.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_spectral_dim.atom_type'
_item.category_id 'spectral_dim'
_item.mandatory_code yes
loop_
_item_examples.case
;
C
;
stop_
_item_type.code 'code'
save_
save__spectral_dim.atom_isotope_number
_item_description.description
;
Isotope number for the specified atom.
;
_item.name '_spectral_dim.atom_isotope_number'
_item.category_id 'spectral_dim'
_item.mandatory_code yes
loop_
_item_examples.case
;
13
;
stop_
_item_type.code 'int'
save_
save__spectral_dim.spectral_region
_item_description.description
;
A code defining the type of nuclei that would be expected to be observed
in the spectral region observed in the dimension of the spectrum.
;
_item.name '_spectral_dim.spectral_region'
_item.category_id 'spectral_dim'
_item.mandatory_code yes
loop_
_item_examples.case
;
CA
;
stop_
_item_type.code 'code'
save_
save__spectral_dim.magnetization_linkage_id
_item_description.description
;
The magnetization linkage ID is used to designate dimensions of a multidimensional
NMR experiment where the nuclei observed in the dimensions are directly
linked by a one bond scalar coupling. For example, the amide proton and amide
nitrogen in an 1H-15N HSQC experiment.
;
_item.name '_spectral_dim.magnetization_linkage_id'
_item.category_id 'spectral_dim'
_item.mandatory_code yes
loop_
_item_examples.case
;
1
;
stop_
_item_type.code 'int'
save_
save__spectral_dim.sweep_width
_item_description.description
;
The width of the spectral window observed in Hz.
;
_item.name '_spectral_dim.sweep_width'
_item.category_id 'spectral_dim'
_item.mandatory_code no
loop_
_item_examples.case
;
6132.234
;
stop_
_item_type.code 'float'
save_
save__spectral_dim.encoding_code
_item_description.description
;
Code describing how information from one spectral dimension has been encoded
in another dimension in for example a reduced dimensionality experiment.
;
_item.name '_spectral_dim.encoding_code'
_item.category_id 'spectral_dim'
_item.mandatory_code no
loop_
_item_examples.case
;
CO in CA
;
stop_
_item_type.code 'line'
save_
save__spectral_dim.encoded_source_dimension_id
_item_description.description
;
The spectral dimension in a reduced dimensionality experiment that is the
source of the magnetization that has been encoded.
;
_item.name '_spectral_dim.encoded_source_dimension_id'
_item.category_id 'spectral_dim'
_item.mandatory_code no
loop_
_item_examples.case
;
3
;
stop_
_item_type.code 'int'
save_
save__spectral_dim.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_spectral_dim.entry_id'
_item.category_id 'spectral_dim'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_dim.spectral_peak_list_id
_item_description.description
;
Pointer to '_Spectral_peak_list.ID'
;
_item.name '_spectral_dim.spectral_peak_list_id'
_item.category_id 'spectral_dim'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_spectral_peak_software
_category.description
;
Items in the spectral_peak_software category provide pointers to the software category and methods category where descriptions of software applications and methods can be found.
;
_category.id 'spectral_peak_software'
loop_
_category_key.name
'_spectral_peak_software.software_id'
'_spectral_peak_software.entry_id'
'_spectral_peak_software.spectral_peak_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spectral_peak_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_spectral_peak_software.software_id'
_item.category_id 'spectral_peak_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_software.software_label
_item_description.description
;
Pointer to a saveframe of the category 'software'
;
_item.name '_spectral_peak_software.software_label'
_item.category_id 'spectral_peak_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__spectral_peak_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_spectral_peak_software.method_id'
_item.category_id 'spectral_peak_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spectral_peak_software.method_label
_item_description.description
;
Pointer to a saveframe of the category 'method'
;
_item.name '_spectral_peak_software.method_label'
_item.category_id 'spectral_peak_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__spectral_peak_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_spectral_peak_software.entry_id'
_item.category_id 'spectral_peak_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spectral_peak_software.spectral_peak_list_id
_item_description.description
;
Pointer to '_Spectral_peak_list.ID'
;
_item.name '_spectral_peak_software.spectral_peak_list_id'
_item.category_id 'spectral_peak_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_peak
_category.description
;
Items in the peak category define the identification code for the peaks in an NMR spectrum and the figure of merit for each peak.
;
_category.id 'peak'
loop_
_category_key.name
'_peak.id'
'_peak.entry_id'
'_peak.spectral_peak_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__peak.id
_item_description.description
;
Unique identifier for the spectral peak.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_peak.id' 'peak' yes
'_peak_general_char.peak_id' 'peak_general_char' yes
'_peak_char.peak_id' 'peak_char' yes
'_assigned_peak_chem_shift.peak_id' 'assigned_peak_chem_shift' yes
'_dist_constraint_value.spectral_peak_id' 'dist_constraint_value' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_peak_general_char.peak_id' '_peak.id'
'_peak_char.peak_id' '_peak.id'
'_assigned_peak_chem_shift.peak_id' '_peak.id'
'_dist_constraint_value.spectral_peak_id' '_peak.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak.figure_of_merit
_item_description.description
;
A quantitative or qualitative value that provides a measure of certainty
that the peak listed represents a real piece of data.
;
_item.name '_peak.figure_of_merit'
_item.category_id 'peak'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak.derivation_set_id
_item_description.description
;
?
;
_item.name '_peak.derivation_set_id'
_item.category_id 'peak'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak.details
_item_description.description
;
Text providing additional information regarding the spectral peak.
;
_item.name '_peak.details'
_item.category_id 'peak'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__peak.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_peak.entry_id'
_item.category_id 'peak'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__peak.spectral_peak_list_id
_item_description.description
;
Pointer to '_Spectral_peak_list.ID'
;
_item.name '_peak.spectral_peak_list_id'
_item.category_id 'peak'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_peak_general_char
_category.description
;
Items in the peak_general_char category provide quantitative information about the peak that is not specific to individual dimensions of the spectral data.
;
_category.id 'peak_general_char'
loop_
_category_key.name
'_peak_general_char.peak_id'
'_peak_general_char.measurement_method'
'_peak_general_char.entry_id'
'_peak_general_char.spectral_peak_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__peak_general_char.peak_id
_item_description.description
;
Pointer to '_Peak.ID'
;
_item.name '_peak_general_char.peak_id'
_item.category_id 'peak_general_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_general_char.intensity_val
_item_description.description
;
Value for the intensity of the peak.
;
_item.name '_peak_general_char.intensity_val'
_item.category_id 'peak_general_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_general_char.intensity_val_err
_item_description.description
;
Error in the value for the intensity of the peak.
;
_item.name '_peak_general_char.intensity_val_err'
_item.category_id 'peak_general_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_general_char.measurement_method
_item_description.description
;
Pointer to 'Method.ID'
;
_item.name '_peak_general_char.measurement_method'
_item.category_id 'peak_general_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_general_char.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_peak_general_char.entry_id'
_item.category_id 'peak_general_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__peak_general_char.spectral_peak_list_id
_item_description.description
;
Pointer to '_Spectral_peak_list.ID'
;
_item.name '_peak_general_char.spectral_peak_list_id'
_item.category_id 'peak_general_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_peak_char
_category.description
;
Items in the peak_char category provide quantitative information about the peak that is specific to the dimensions of the spectral data.
;
_category.id 'peak_char'
loop_
_category_key.name
'_peak_char.peak_id'
'_peak_char.spectral_dim_id'
'_peak_char.entry_id'
'_peak_char.spectral_peak_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__peak_char.peak_id
_item_description.description
;
Pointer to '_Peak.ID'
;
_item.name '_peak_char.peak_id'
_item.category_id 'peak_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_char.peak_contribution_id
_item_description.description
;
?
;
_item.name '_peak_char.peak_contribution_id'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_char.spectral_dim_id
_item_description.description
;
Pointer to '_Spectral_dim.ID'
;
_item.name '_peak_char.spectral_dim_id'
_item.category_id 'peak_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_char.chem_shift_val
_item_description.description
;
Chem shift val
;
_item.name '_peak_char.chem_shift_val'
_item.category_id 'peak_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.chem_shift_val_err
_item_description.description
;
Chem shift val err
;
_item.name '_peak_char.chem_shift_val_err'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.line_width_val
_item_description.description
;
Line width val
;
_item.name '_peak_char.line_width_val'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.line_width_val_err
_item_description.description
;
Line width val err
;
_item.name '_peak_char.line_width_val_err'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.phase_val
_item_description.description
;
Phase val
;
_item.name '_peak_char.phase_val'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.phase_val_err
_item_description.description
;
Phase val err
;
_item.name '_peak_char.phase_val_err'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.decay_rate_val
_item_description.description
;
Decay rate val
;
_item.name '_peak_char.decay_rate_val'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.decay_rate_val_err
_item_description.description
;
Decay rate val err
;
_item.name '_peak_char.decay_rate_val_err'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_char.derivation_method_id
_item_description.description
;
Derivation methods ID
;
_item.name '_peak_char.derivation_method_id'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_char.resonance_id
_item_description.description
;
Pointer to '_Resonance.ID'
;
_item.name '_peak_char.resonance_id'
_item.category_id 'peak_char'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_char.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_peak_char.entry_id'
_item.category_id 'peak_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__peak_char.spectral_peak_list_id
_item_description.description
;
Pointer to '_Spectral_peak_list.ID'
;
_item.name '_peak_char.spectral_peak_list_id'
_item.category_id 'peak_char'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_peak_contribution
_category.description
;
category description not available
;
_category.id 'peak_contribution'
loop_
_category_key.name
?
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__peak_contribution.id
_item_description.description
;
?
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_peak_contribution.id' 'peak_contribution' no
'_peak_char.peak_contribution_id' 'peak_char' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_peak_char.peak_contribution_id' '_peak_contribution.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__peak_contribution.contribution_fractional_val
_item_description.description
;
?
;
_item.name '_peak_contribution.contribution_fractional_val'
_item.category_id 'peak_contribution'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__peak_contribution.entry_id
_item_description.description
;
?
;
_item.name '_peak_contribution.entry_id'
_item.category_id 'peak_contribution'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__peak_contribution.spectral_peak_list_id
_item_description.description
;
?
;
_item.name '_peak_contribution.spectral_peak_list_id'
_item.category_id 'peak_contribution'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_assigned_peak_chem_shift
_category.description
;
Items in the assigned_peak_chem_shift category define the atom(s) assigned to individual peaks in the spectral peak list.
;
_category.id 'assigned_peak_chem_shift'
loop_
_category_key.name
'_assigned_peak_chem_shift.peak_id'
'_assigned_peak_chem_shift.spectral_dim_id'
'_assigned_peak_chem_shift.entry_id'
'_assigned_peak_chem_shift.spectral_peak_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'spectral_peak_list'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__assigned_peak_chem_shift.peak_id
_item_description.description
;
Pointer to '_Peak.ID'
;
_item.name '_assigned_peak_chem_shift.peak_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.spectral_dim_id
_item_description.description
;
Pointer to '_Spectral_dim.ID'
;
_item.name '_assigned_peak_chem_shift.spectral_dim_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.set_id
_item_description.description
;
Set ID
;
_item.name '_assigned_peak_chem_shift.set_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.magnetization_linkage_id
_item_description.description
;
Magnetization linkage ID
;
_item.name '_assigned_peak_chem_shift.magnetization_linkage_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_assigned_peak_chem_shift.assembly_atom_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.val
_item_description.description
;
The quantitative chemical shift value assigned to the peak.
;
_item.name '_assigned_peak_chem_shift.val'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__assigned_peak_chem_shift.figure_of_merit
_item_description.description
;
Figure of merit
;
_item.name '_assigned_peak_chem_shift.figure_of_merit'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__assigned_peak_chem_shift.assigned_chem_shift_list_id
_item_description.description
;
Pointer to '_Assigned_chem_shift_list.ID'
;
_item.name '_assigned_peak_chem_shift.assigned_chem_shift_list_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.atom_chem_shift_id
_item_description.description
;
Pointer to '_Atom_chem_shift.ID'
;
_item.name '_assigned_peak_chem_shift.atom_chem_shift_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_assigned_peak_chem_shift.entity_assembly_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_assigned_peak_chem_shift.entity_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_assigned_peak_chem_shift.comp_index_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_assigned_peak_chem_shift.comp_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assigned_peak_chem_shift.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_assigned_peak_chem_shift.atom_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__assigned_peak_chem_shift.resonance_id
_item_description.description
;
Pointer to '_Resonance.ID'
;
_item.name '_assigned_peak_chem_shift.resonance_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__assigned_peak_chem_shift.details
_item_description.description
;
Text describing the reported spectral peak assignment.
;
_item.name '_assigned_peak_chem_shift.details'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__assigned_peak_chem_shift.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_assigned_peak_chem_shift.entry_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__assigned_peak_chem_shift.spectral_peak_list_id
_item_description.description
;
Pointer to '_Spectral_peak_list.ID'
;
_item.name '_assigned_peak_chem_shift.spectral_peak_list_id'
_item.category_id 'assigned_peak_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_resonance_linker_list
_category.description
;
category description not available
;
_category.id 'resonance_linker_list'
loop_
_category_key.name
'_resonance_linker_list.entry_id'
'_resonance_linker_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__resonance_linker_list.sf_category
_item_description.description
;
?
;
_item.name '_resonance_linker_list.sf_category'
_item.category_id 'resonance_linker_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance_linker_list.sf_framecode
_item_description.description
;
?
;
_item.name '_resonance_linker_list.sf_framecode'
_item.category_id 'resonance_linker_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance_linker_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_resonance_linker_list.entry_id'
_item.category_id 'resonance_linker_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance_linker_list.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of resonance linker
information from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_resonance_linker_list.id' 'resonance_linker_list' no
'_resonance.resonance_linker_list_id' 'resonance' no
'_resonance_assignment.resonance_linker_list_id' 'resonance_assignment' no
'_spin_system.resonance_linker_list_id' 'spin_system' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_resonance.resonance_linker_list_id' '_resonance_linker_list.id'
'_resonance_assignment.resonance_linker_list_id' '_resonance_linker_list.id'
'_spin_system.resonance_linker_list_id' '_resonance_linker_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_linker_list.details
_item_description.description
;
Text providing additional information regarding the data in the resonance
linker list saveframe.
;
_item.name '_resonance_linker_list.details'
_item.category_id 'resonance_linker_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_resonance
_category.description
;
category description not available
;
_category.id 'resonance'
loop_
_category_key.name
'_resonance.id'
'_resonance.entry_id'
'_resonance.resonance_linker_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__resonance.id
_item_description.description
;
?
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_resonance.id' 'resonance' no
'_atom_chem_shift.resonance_id' 'atom_chem_shift' no
'_peak_char.resonance_id' 'peak_char' no
'_assigned_peak_chem_shift.resonance_id' 'assigned_peak_chem_shift' no
'_isotope_effect.resonance_id_1' 'isotope_effect' no
'_isotope_effect.resonance_id_2' 'isotope_effect' no
'_mol_interaction_chem_shift.resonance_id' 'mol_interaction_chem_shift' no
'_cs_anisotropy.resonance_id' 'cs_anisotropy' no
'_rdc.resonance_id_1' 'rdc' no
'_rdc.resonance_id_2' 'rdc' no
'_dipolar_coupling.resonance_id_1' 'dipolar_coupling' no
'_dipolar_coupling.resonance_id_2' 'dipolar_coupling' no
'_spectral_density.resonance_id' 'spectral_density' no
'_other_data.resonance_id' 'other_data' no
'_h_exch_rate.resonance_id' 'h_exch_rate' no
'_h_exch_protection_factor.resonance_id' 'h_exch_protection_factor' no
'_homonucl_noe.resonance_id_1' 'homonucl_noe' no
'_homonucl_noe.resonance_id_2' 'homonucl_noe' no
'_heteronucl_noe.resonance_id_1' 'heteronucl_noe' no
'_heteronucl_noe.resonance_id_2' 'heteronucl_noe' no
'_t1.resonance_id' 't1' no
'_t1rho.resonance_id' 't1rho' no
'_t2.resonance_id' 't2' no
'_dipole_dipole_relax.resonance_id_1' 'dipole_dipole_relax' no
'_dipole_dipole_relax.resonance_id_2' 'dipole_dipole_relax' no
'_cross_correlation_dd.resonance_id' 'cross_correlation_dd' no
'_cross_correlation_d_csa.resonance_id_1' 'cross_correlation_d_csa' no
'_cross_correlation_d_csa.resonance_id_2' 'cross_correlation_d_csa' no
'_order_param.resonance_id' 'order_param' no
'_d_h_fractionation_factor.resonance_id' 'd_h_fractionation_factor' no
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_atom_chem_shift.resonance_id' '_resonance.id'
'_peak_char.resonance_id' '_resonance.id'
'_assigned_peak_chem_shift.resonance_id' '_resonance.id'
'_isotope_effect.resonance_id_1' '_resonance.id'
'_isotope_effect.resonance_id_2' '_resonance.id'
'_mol_interaction_chem_shift.resonance_id' '_resonance.id'
'_cs_anisotropy.resonance_id' '_resonance.id'
'_rdc.resonance_id_1' '_resonance.id'
'_rdc.resonance_id_2' '_resonance.id'
'_dipolar_coupling.resonance_id_1' '_resonance.id'
'_dipolar_coupling.resonance_id_2' '_resonance.id'
'_spectral_density.resonance_id' '_resonance.id'
'_other_data.resonance_id' '_resonance.id'
'_h_exch_rate.resonance_id' '_resonance.id'
'_h_exch_protection_factor.resonance_id' '_resonance.id'
'_homonucl_noe.resonance_id_1' '_resonance.id'
'_homonucl_noe.resonance_id_2' '_resonance.id'
'_heteronucl_noe.resonance_id_1' '_resonance.id'
'_heteronucl_noe.resonance_id_2' '_resonance.id'
'_t1.resonance_id' '_resonance.id'
'_t1rho.resonance_id' '_resonance.id'
'_t2.resonance_id' '_resonance.id'
'_dipole_dipole_relax.resonance_id_1' '_resonance.id'
'_dipole_dipole_relax.resonance_id_2' '_resonance.id'
'_cross_correlation_dd.resonance_id' '_resonance.id'
'_cross_correlation_d_csa.resonance_id_1' '_resonance.id'
'_cross_correlation_d_csa.resonance_id_2' '_resonance.id'
'_order_param.resonance_id' '_resonance.id'
'_d_h_fractionation_factor.resonance_id' '_resonance.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance.name
_item_description.description
;
?
;
_item.name '_resonance.name'
_item.category_id 'resonance'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance.resonance_set_id
_item_description.description
;
?
;
_item.name '_resonance.resonance_set_id'
_item.category_id 'resonance'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance.spin_system_id
_item_description.description
;
?
;
_item.name '_resonance.spin_system_id'
_item.category_id 'resonance'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_resonance.entry_id'
_item.category_id 'resonance'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance.resonance_linker_list_id
_item_description.description
;
Pointer to '_Resonance_linker_list.ID'
;
_item.name '_resonance.resonance_linker_list_id'
_item.category_id 'resonance'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_resonance_set_atom_set_link
_category.description
;
category description not available
;
_category.id 'resonance_set_atom_set_link'
loop_
_category_key.name
?
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__resonance_set_atom_set_link.resonance_set_id
_item_description.description
;
?
;
_item.name '_resonance_set_atom_set_link.resonance_set_id'
_item.category_id 'resonance_set_atom_set_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__resonance_set_atom_set_link.atom_set_id
_item_description.description
;
?
;
_item.name '_resonance_set_atom_set_link.atom_set_id'
_item.category_id 'resonance_set_atom_set_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__resonance_set_atom_set_link.entry_id
_item_description.description
;
?
;
_item.name '_resonance_set_atom_set_link.entry_id'
_item.category_id 'resonance_set_atom_set_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__resonance_set_atom_set_link.resonance_linker_list_id
_item_description.description
;
?
;
_item.name '_resonance_set_atom_set_link.resonance_linker_list_id'
_item.category_id 'resonance_set_atom_set_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save_rosonance_covalent_link
_category.description
;
category description not available
;
_category.id 'rosonance_covalent_link'
loop_
_category_key.name
?
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__rosonance_covalent_link.resonance_id_1
_item_description.description
;
?
;
_item.name '_rosonance_covalent_link.resonance_id_1'
_item.category_id 'rosonance_covalent_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__rosonance_covalent_link.resonance_id_2
_item_description.description
;
?
;
_item.name '_rosonance_covalent_link.resonance_id_2'
_item.category_id 'rosonance_covalent_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__rosonance_covalent_link.entry_id
_item_description.description
;
?
;
_item.name '_rosonance_covalent_link.entry_id'
_item.category_id 'rosonance_covalent_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__rosonance_covalent_link.resonance_linker_list_id
_item_description.description
;
?
;
_item.name '_rosonance_covalent_link.resonance_linker_list_id'
_item.category_id 'rosonance_covalent_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save_resonance_assignment
_category.description
;
category description not available
;
_category.id 'resonance_assignment'
loop_
_category_key.name
'_resonance_assignment.set_id'
'_resonance_assignment.entity_assembly_id'
'_resonance_assignment.comp_index_id'
'_resonance_assignment.atom_id'
'_resonance_assignment.entry_id'
'_resonance_assignment.resonance_linker_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__resonance_assignment.set_id
_item_description.description
;
?
;
_item.name '_resonance_assignment.set_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_assignment.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_resonance_assignment.assembly_atom_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_assignment.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_resonance_assignment.entity_assembly_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_assignment.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_resonance_assignment.entity_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_assignment.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_resonance_assignment.comp_index_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_assignment.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_resonance_assignment.comp_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance_assignment.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_resonance_assignment.atom_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__resonance_assignment.atom_isotope_number
_item_description.description
;
?
;
_item.name '_resonance_assignment.atom_isotope_number'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__resonance_assignment.atom_set_id
_item_description.description
;
?
;
_item.name '_resonance_assignment.atom_set_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__resonance_assignment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_resonance_assignment.entry_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__resonance_assignment.resonance_linker_list_id
_item_description.description
;
Pointer to '_Resonance_linker_list.ID'
;
_item.name '_resonance_assignment.resonance_linker_list_id'
_item.category_id 'resonance_assignment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_spin_system
_category.description
;
category description not available
;
_category.id 'spin_system'
loop_
_category_key.name
'_spin_system.id'
'_spin_system.entry_id'
'_spin_system.resonance_linker_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spin_system.id
_item_description.description
;
An integer value that uniquely identifies the spin system in the list.
;
_item.name '_spin_system.id'
_item.category_id 'spin_system'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spin_system.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_spin_system.entity_assembly_id'
_item.category_id 'spin_system'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spin_system.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_spin_system.comp_index_id'
_item.category_id 'spin_system'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__spin_system.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_spin_system.comp_id'
_item.category_id 'spin_system'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spin_system.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_spin_system.entry_id'
_item.category_id 'spin_system'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__spin_system.resonance_linker_list_id
_item_description.description
;
Pointer to '_Resonance_linker_list.ID'
;
_item.name '_spin_system.resonance_linker_list_id'
_item.category_id 'spin_system'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_spin_system_link
_category.description
;
category description not available
;
_category.id 'spin_system_link'
loop_
_category_key.name
?
stop_
loop_
_category_group.id
'inclusive_group'
'value_derivation'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__spin_system_link.spin_system_id_1
_item_description.description
;
?
;
_item.name '_spin_system_link.spin_system_id_1'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__spin_system_link.spin_system_id_2
_item_description.description
;
?
;
_item.name '_spin_system_link.spin_system_id_2'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__spin_system_link.offset
_item_description.description
;
?
;
_item.name '_spin_system_link.offset'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__spin_system_link.type
_item_description.description
;
?
;
_item.name '_spin_system_link.type'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__spin_system_link.selected
_item_description.description
;
?
;
_item.name '_spin_system_link.selected'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__spin_system_link.entry_id
_item_description.description
;
?
;
_item.name '_spin_system_link.entry_id'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save__spin_system_link.resonance_linker_list_id
_item_description.description
;
?
;
_item.name '_spin_system_link.resonance_linker_list_id'
_item.category_id 'spin_system_link'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code '?'
save_
save_chem_shift_isotope_effect_list
_category.description
;
Items in the chem_shift_isotope_effect_list category provide information about a list of reported chemical shift values that measure the effects of isotopic substitutions in a molecular entity.
;
_category.id 'chem_shift_isotope_effect_list'
loop_
_category_key.name
'_chem_shift_isotope_effect_list.entry_id'
'_chem_shift_isotope_effect_list.id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_isotope_effect'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_shift_isotope_effect_list.sf_category
_item_description.description
;
Category definition for the information content of the saveframe
;
_item.name '_chem_shift_isotope_effect_list.sf_category'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_isotope_effect_list.sf_framecode
_item_description.description
;
A label for the saveframe that describes in very brief terms the information
contained in the saveframe.
;
_item.name '_chem_shift_isotope_effect_list.sf_framecode'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'chem_shift_isotope_effect_list_1'
_item_type.code 'code'
save_
save__chem_shift_isotope_effect_list.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_shift_isotope_effect_list.entry_id'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_isotope_effect_list.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of chemical shift
isotope effect values from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_chem_shift_isotope_effect_list.id' 'chem_shift_isotope_effect_list' yes
'_isotope_effect_experiment.chem_shift_isotope_effect_list_id' 'isotope_effect_experiment' yes
'_isotope_effect_software.chem_shift_isotope_effect_list_id' 'isotope_effect_software' yes
'_isotope_effect.chem_shift_isotope_effect_list_id' 'isotope_effect' yes
'_isotope_label_pattern.chem_shift_isotope_effect_list_id' 'isotope_label_pattern' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_isotope_effect_experiment.chem_shift_isotope_effect_list_id' '_chem_shift_isotope_effect_list.id'
'_isotope_effect_software.chem_shift_isotope_effect_list_id' '_chem_shift_isotope_effect_list.id'
'_isotope_effect.chem_shift_isotope_effect_list_id' '_chem_shift_isotope_effect_list.id'
'_isotope_label_pattern.chem_shift_isotope_effect_list_id' '_chem_shift_isotope_effect_list.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_isotope_effect_list.data_file_name
_item_description.description
;
The name of the file submitted with this depostion that contains the quantitative
data for this saveframe.
;
_item.name '_chem_shift_isotope_effect_list.data_file_name'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_isotope_effect_list.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_chem_shift_isotope_effect_list.sample_condition_list_id'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_isotope_effect_list.sample_condition_list_label
_item_description.description
;
Pointer to a saveframe of the category 'sample_conditions'
;
_item.name '_chem_shift_isotope_effect_list.sample_condition_list_label'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__chem_shift_isotope_effect_list.isotope_effect_type
_item_description.description
;
?
;
_item.name '_chem_shift_isotope_effect_list.isotope_effect_type'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_isotope_effect_list.isotope_effect_val_units
_item_description.description
;
?
;
_item.name '_chem_shift_isotope_effect_list.isotope_effect_val_units'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_isotope_effect_list.details
_item_description.description
;
Text providing additional information regarding the chemical shift isotope
effect data and its derivation.
;
_item.name '_chem_shift_isotope_effect_list.details'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_shift_isotope_effect_list.text_data_format
_item_description.description
;
The data format used to represent the chemical shift isotope effect data
as ASCII text in the text block that is the value to the '_Assigned_chem_shift.Text_data'
tag.
;
_item.name '_chem_shift_isotope_effect_list.text_data_format'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_isotope_effect_list.text_data
_item_description.description
;
A set of chemical shift isotope effect data formatted as ASCII text.
;
_item.name '_chem_shift_isotope_effect_list.text_data'
_item.category_id 'chem_shift_isotope_effect_list'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_isotope_effect_experiment
_category.description
;
Items in the isotope_effect_experiment category provide pointers to the NMR experiments and samples used to collect the data for a set of chemical shift data that report the effect of isotopic substitutions in a molecular assembly.
;
_category.id 'isotope_effect_experiment'
loop_
_category_key.name
'_isotope_effect_experiment.experiment_id'
'_isotope_effect_experiment.sample_id'
'_isotope_effect_experiment.sample_state'
'_isotope_effect_experiment.entry_id'
'_isotope_effect_experiment.chem_shift_isotope_effect_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_isotope_effect'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__isotope_effect_experiment.experiment_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_isotope_effect_experiment.experiment_id'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect_experiment.experiment_name
_item_description.description
;
Pointer to a saveframe of the category 'NMR_spectrometer_expt'
;
_item.name '_isotope_effect_experiment.experiment_name'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__isotope_effect_experiment.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_isotope_effect_experiment.sample_id'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect_experiment.sample_label
_item_description.description
;
Pointer to a saveframe of the category 'sample'
;
_item.name '_isotope_effect_experiment.sample_label'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__isotope_effect_experiment.sample_state
_item_description.description
;
Physical state of the sample either anisotropic or isotropic.
;
_item.name '_isotope_effect_experiment.sample_state'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'isotropic'
_item_type.code 'line'
save_
save__isotope_effect_experiment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_isotope_effect_experiment.entry_id'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_effect_experiment.chem_shift_isotope_effect_list_id
_item_description.description
;
Pointer to '_Chem_shift_isotope_effect_list.ID'
;
_item.name '_isotope_effect_experiment.chem_shift_isotope_effect_list_id'
_item.category_id 'isotope_effect_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_isotope_effect_software
_category.description
;
Items in the isotope_effect_software category provide pointers to the software category and methods category where descriptions of software applications and methods can be found.
;
_category.id 'isotope_effect_software'
loop_
_category_key.name
'_isotope_effect_software.software_id'
'_isotope_effect_software.entry_id'
'_isotope_effect_software.chem_shift_isotope_effect_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_isotope_effect'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__isotope_effect_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_isotope_effect_software.software_id'
_item.category_id 'isotope_effect_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect_software.software_label
_item_description.description
;
Pointer to a saveframe of the category 'software'
;
_item.name '_isotope_effect_software.software_label'
_item.category_id 'isotope_effect_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__isotope_effect_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_isotope_effect_software.method_id'
_item.category_id 'isotope_effect_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect_software.method_label
_item_description.description
;
Pointer to a saveframe of the category 'method'
;
_item.name '_isotope_effect_software.method_label'
_item.category_id 'isotope_effect_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__isotope_effect_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_isotope_effect_software.entry_id'
_item.category_id 'isotope_effect_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_effect_software.chem_shift_isotope_effect_list_id
_item_description.description
;
Pointer to '_Chem_shift_isotope_effect_list.ID'
;
_item.name '_isotope_effect_software.chem_shift_isotope_effect_list_id'
_item.category_id 'isotope_effect_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_isotope_effect
_category.description
;
Items in the atom_chem_shift category describe the chemical shift value assigned to specific atoms in a molecular assembly.
;
_category.id 'isotope_effect'
loop_
_category_key.name
'_isotope_effect.id'
'_isotope_effect.entry_id'
'_isotope_effect.chem_shift_isotope_effect_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_isotope_effect'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__isotope_effect.id
_item_description.description
;
Unique identifier for the observed isotope effect.
;
_item.name '_isotope_effect.id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_isotope_effect.assembly_atom_id'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_isotope_effect.entity_assembly_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_isotope_effect.entity_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_isotope_effect.comp_index_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_isotope_effect.seq_id'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_isotope_effect.comp_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_effect.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_isotope_effect.atom_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__isotope_effect.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_isotope_effect.atom_type'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_effect.atom_isotope_number
_item_description.description
;
The isotope number for the chemical element defined by the tag '_Atom_type'
or any of its related tags.
;
_item.name '_isotope_effect.atom_isotope_number'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
1 13 15
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.label_sample_id_1
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_isotope_effect.label_sample_id_1'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.label_pattern_id_1
_item_description.description
;
Pointer to '_Isotope_label_pattern.ID'
;
_item.name '_isotope_effect.label_pattern_id_1'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.label_1_id_chem_shift_val
_item_description.description
;
?
;
_item.name '_isotope_effect.label_1_id_chem_shift_val'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__isotope_effect.label_1_id_chem_shift_val_err
_item_description.description
;
?
;
_item.name '_isotope_effect.label_1_id_chem_shift_val_err'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__isotope_effect.label_sample_id_2
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_isotope_effect.label_sample_id_2'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.label_pattern_id_2
_item_description.description
;
Pointer to '_Isotope_label_pattern.ID'
;
_item.name '_isotope_effect.label_pattern_id_2'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.label_2_id_chem_shift_val
_item_description.description
;
?
;
_item.name '_isotope_effect.label_2_id_chem_shift_val'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__isotope_effect.label_2_id_chem_shift_val_err
_item_description.description
;
?
;
_item.name '_isotope_effect.label_2_id_chem_shift_val_err'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__isotope_effect.chem_shift_val
_item_description.description
;
?
;
_item.name '_isotope_effect.chem_shift_val'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__isotope_effect.chem_shift_val_err
_item_description.description
;
?
;
_item.name '_isotope_effect.chem_shift_val_err'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__isotope_effect.resonance_id_1
_item_description.description
;
Pointer to '_Resonance.ID'
;
_item.name '_isotope_effect.resonance_id_1'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.resonance_id_2
_item_description.description
;
Pointer to '_Resonance.ID'
;
_item.name '_isotope_effect.resonance_id_2'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_effect.auth_seq_id
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_isotope_effect.auth_seq_id'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
-3
;
stop_
_item_type.code 'code'
save_
save__isotope_effect.auth_comp_id
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_isotope_effect.auth_comp_id'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
DPN
;
stop_
_item_type.code 'code'
save_
save__isotope_effect.auth_atom_id
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_isotope_effect.auth_atom_id'
_item.category_id 'isotope_effect'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__isotope_effect.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_isotope_effect.entry_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_effect.chem_shift_isotope_effect_list_id
_item_description.description
;
Pointer to '_Chem_shift_isotope_effect_list.ID'
;
_item.name '_isotope_effect.chem_shift_isotope_effect_list_id'
_item.category_id 'isotope_effect'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_isotope_label_pattern
_category.description
;
category description not available
;
_category.id 'isotope_label_pattern'
loop_
_category_key.name
'_isotope_label_pattern.id'
'_isotope_label_pattern.entry_id'
'_isotope_label_pattern.chem_shift_isotope_effect_list_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_isotope_effect'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__isotope_label_pattern.id
_item_description.description
;
Unique identifier for the defined isotope labeling pattern.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_isotope_label_pattern.id' 'isotope_label_pattern' yes
'_isotope_effect.label_pattern_id_1' 'isotope_effect' yes
'_isotope_effect.label_pattern_id_2' 'isotope_effect' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_isotope_effect.label_pattern_id_1' '_isotope_label_pattern.id'
'_isotope_effect.label_pattern_id_2' '_isotope_label_pattern.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_isotope_label_pattern.assembly_atom_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_isotope_label_pattern.entity_assembly_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_isotope_label_pattern.entity_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_isotope_label_pattern.comp_index_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_isotope_label_pattern.seq_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_isotope_label_pattern.comp_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_label_pattern.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_isotope_label_pattern.atom_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__isotope_label_pattern.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_isotope_label_pattern.atom_type'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_label_pattern.atom_isotope_number
_item_description.description
;
Isotope number for the specified atom.
;
_item.name '_isotope_label_pattern.atom_isotope_number'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__isotope_label_pattern.auth_seq_id
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_isotope_label_pattern.auth_seq_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
-3
;
stop_
_item_type.code 'code'
save_
save__isotope_label_pattern.auth_comp_id
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_isotope_label_pattern.auth_comp_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
DPN
;
stop_
_item_type.code 'code'
save_
save__isotope_label_pattern.auth_atom_id
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_isotope_label_pattern.auth_atom_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__isotope_label_pattern.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_isotope_label_pattern.entry_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__isotope_label_pattern.chem_shift_isotope_effect_list_id
_item_description.description
;
Pointer to '_Chem_shift_isotope_effect_list.ID'
;
_item.name '_isotope_label_pattern.chem_shift_isotope_effect_list_id'
_item.category_id 'isotope_label_pattern'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_mol_interaction_chem_shift_diff
_category.description
;
Items in the mol_interaction_chem_shift_diff category provide information about a list of reported chemical shift values resulting from the interactions between molecules in a molecular assembly.
;
_category.id 'mol_interaction_chem_shift_diff'
loop_
_category_key.name
'_mol_interaction_chem_shift_diff.entry_id'
'_mol_interaction_chem_shift_diff.id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_interaction_diff'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__mol_interaction_chem_shift_diff.sf_category
_item_description.description
;
Category definition for the information content of the saveframe
;
_item.name '_mol_interaction_chem_shift_diff.sf_category'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift_diff.sf_framecode
_item_description.description
;
A label for the saveframe that describes in very brief terms the information
contained in the saveframe.
;
_item.name '_mol_interaction_chem_shift_diff.sf_framecode'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'mol_interaction_chem_shift_list_1'
_item_type.code 'code'
save_
save__mol_interaction_chem_shift_diff.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_mol_interaction_chem_shift_diff.entry_id'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift_diff.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of molecular interaction
information from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_mol_interaction_chem_shift_diff.id' 'mol_interaction_chem_shift_diff' yes
'_mol_interaction_diff_experiment.mol_interaction_chem_shift_diff_id' 'mol_interaction_diff_experiment' yes
'_mol_interaction_diff_software.mol_interaction_chem_shift_diff_id' 'mol_interaction_diff_software' yes
'_mol_interaction_chem_shift.mol_interaction_chem_shift_diff_id' 'mol_interaction_chem_shift' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_mol_interaction_diff_experiment.mol_interaction_chem_shift_diff_id' '_mol_interaction_chem_shift_diff.id'
'_mol_interaction_diff_software.mol_interaction_chem_shift_diff_id' '_mol_interaction_chem_shift_diff.id'
'_mol_interaction_chem_shift.mol_interaction_chem_shift_diff_id' '_mol_interaction_chem_shift_diff.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift_diff.data_file_name
_item_description.description
;
The name of the file submitted with this depostion that contains the quantitative
data for this saveframe.
;
_item.name '_mol_interaction_chem_shift_diff.data_file_name'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__mol_interaction_chem_shift_diff.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_mol_interaction_chem_shift_diff.sample_condition_list_id'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift_diff.sample_condition_list_label
_item_description.description
;
Pointer to a saveframe of the category 'sample_conditions'
;
_item.name '_mol_interaction_chem_shift_diff.sample_condition_list_label'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__mol_interaction_chem_shift_diff.chem_shift_ref_set_id
_item_description.description
;
Pointer to '_Chem_shift_reference.ID'
;
_item.name '_mol_interaction_chem_shift_diff.chem_shift_ref_set_id'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift_diff.chem_shift_ref_set_label
_item_description.description
;
Pointer to a saveframe of the category 'chemical_shift_reference.' This
is the saveframe where the chemical shift referencing standards are described.
;
_item.name '_mol_interaction_chem_shift_diff.chem_shift_ref_set_label'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__mol_interaction_chem_shift_diff.details
_item_description.description
;
Text providing additional information regarding the set of molecular interaction
data and their derivation.
;
_item.name '_mol_interaction_chem_shift_diff.details'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__mol_interaction_chem_shift_diff.text_data_format
_item_description.description
;
The data format used to represent the chemical shift data for molecular
interaction observations as ASCII text in the text block that is the value to the
'_Assigned_chem_shift.Text_data' tag.
;
_item.name '_mol_interaction_chem_shift_diff.text_data_format'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__mol_interaction_chem_shift_diff.text_data
_item_description.description
;
A set of chemical shift data defining molecular interactions formatted
as ASCII text.
;
_item.name '_mol_interaction_chem_shift_diff.text_data'
_item.category_id 'mol_interaction_chem_shift_diff'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_mol_interaction_diff_experiment
_category.description
;
Items in the mol_interaction_diff_experiment category provide pointers to the NMR experiments and samples used to collect the data for a set of reported chemical shifts that represent the effect of two or molecules interaction with each other.
;
_category.id 'mol_interaction_diff_experiment'
loop_
_category_key.name
'_mol_interaction_diff_experiment.experiment_id'
'_mol_interaction_diff_experiment.sample_id'
'_mol_interaction_diff_experiment.sample_state'
'_mol_interaction_diff_experiment.entry_id'
'_mol_interaction_diff_experiment.mol_interaction_chem_shift_diff_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_interaction_diff'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__mol_interaction_diff_experiment.experiment_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_mol_interaction_diff_experiment.experiment_id'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_diff_experiment.experiment_name
_item_description.description
;
Pointer to a saveframe of the category 'NMR_spectrometer_expt'
;
_item.name '_mol_interaction_diff_experiment.experiment_name'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__mol_interaction_diff_experiment.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_mol_interaction_diff_experiment.sample_id'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_diff_experiment.sample_label
_item_description.description
;
Pointer to a saveframe of the category 'sample'
;
_item.name '_mol_interaction_diff_experiment.sample_label'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__mol_interaction_diff_experiment.sample_state
_item_description.description
;
Physical state of the sample either anisotropic or isotropic.
;
_item.name '_mol_interaction_diff_experiment.sample_state'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'isotropic'
_item_type.code 'line'
save_
save__mol_interaction_diff_experiment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_mol_interaction_diff_experiment.entry_id'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_diff_experiment.mol_interaction_chem_shift_diff_id
_item_description.description
;
Pointer to '_Mol_interaction_chem_shift_diff.ID'
;
_item.name '_mol_interaction_diff_experiment.mol_interaction_chem_shift_diff_id'
_item.category_id 'mol_interaction_diff_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_mol_interaction_diff_software
_category.description
;
Items in the mol_interaction_diff_software category provide pointers to the software category and methods category where descriptions of software applications and methods can be found.
;
_category.id 'mol_interaction_diff_software'
loop_
_category_key.name
'_mol_interaction_diff_software.software_id'
'_mol_interaction_diff_software.entry_id'
'_mol_interaction_diff_software.mol_interaction_chem_shift_diff_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_interaction_diff'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__mol_interaction_diff_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_mol_interaction_diff_software.software_id'
_item.category_id 'mol_interaction_diff_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_diff_software.software_label
_item_description.description
;
Pointer to a saveframe of the category 'software'
;
_item.name '_mol_interaction_diff_software.software_label'
_item.category_id 'mol_interaction_diff_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__mol_interaction_diff_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_mol_interaction_diff_software.method_id'
_item.category_id 'mol_interaction_diff_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_diff_software.method_label
_item_description.description
;
Pointer to a saveframe of the category 'method'
;
_item.name '_mol_interaction_diff_software.method_label'
_item.category_id 'mol_interaction_diff_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__mol_interaction_diff_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_mol_interaction_diff_software.entry_id'
_item.category_id 'mol_interaction_diff_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_diff_software.mol_interaction_chem_shift_diff_id
_item_description.description
;
Pointer to '_Mol_interaction_chem_shift_diff.ID'
;
_item.name '_mol_interaction_diff_software.mol_interaction_chem_shift_diff_id'
_item.category_id 'mol_interaction_diff_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_mol_interaction_chem_shift
_category.description
;
Items in the mol_interaction_chem_shift category describe the chemical shift values assigned to specific atoms in a molecular assembly that result from the interactions between molecules in the molecular assembly.
;
_category.id 'mol_interaction_chem_shift'
loop_
_category_key.name
'_mol_interaction_chem_shift.id'
'_mol_interaction_chem_shift.entry_id'
'_mol_interaction_chem_shift.mol_interaction_chem_shift_diff_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_interaction_diff'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__mol_interaction_chem_shift.id
_item_description.description
;
Unique identifier for the observed chemical shift difference for a nuclei
caused by the interaction between two members of the molecular assembly.
;
_item.name '_mol_interaction_chem_shift.id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_mol_interaction_chem_shift.assembly_atom_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_mol_interaction_chem_shift.entity_assembly_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_mol_interaction_chem_shift.entity_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_mol_interaction_chem_shift.comp_index_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_mol_interaction_chem_shift.seq_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_mol_interaction_chem_shift.comp_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_mol_interaction_chem_shift.atom_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__mol_interaction_chem_shift.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_mol_interaction_chem_shift.atom_type'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift.chem_shift_val
_item_description.description
;
Chemical shift value for the atom when in the presence of the molecules
that are interacting with it.
;
_item.name '_mol_interaction_chem_shift.chem_shift_val'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__mol_interaction_chem_shift.chem_shift_val_err
_item_description.description
;
Estimated error in the chemical shift value.
;
_item.name '_mol_interaction_chem_shift.chem_shift_val_err'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__mol_interaction_chem_shift.chem_shift_diff_val
_item_description.description
;
The difference between the chemical shift value for the atom in the free
state of the molecule and in the state where it is interacting with one or more
other molecules.
;
_item.name '_mol_interaction_chem_shift.chem_shift_diff_val'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__mol_interaction_chem_shift.chem_shift_diff_val_err
_item_description.description
;
Estimated error for the delta chemical shift value reported.
;
_item.name '_mol_interaction_chem_shift.chem_shift_diff_val_err'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__mol_interaction_chem_shift.resonance_id
_item_description.description
;
Pointer to '_Resonance.ID'
;
_item.name '_mol_interaction_chem_shift.resonance_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__mol_interaction_chem_shift.auth_seq_id
_item_description.description
;
An alternative identifier for Seq_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
Note that the value is not required to be a number and does not need to correspond
to the value for Seq_ID or Comp_index_ID.
;
_item.name '_mol_interaction_chem_shift.auth_seq_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
-3
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift.auth_comp_id
_item_description.description
;
An alternative identifier for Comp_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_mol_interaction_chem_shift.auth_comp_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
DPN
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift.auth_atom_id
_item_description.description
;
An alternative identifier for Atom_id that may be provided by an author
in order to match that used in the publication that describes the experimental data.
;
_item.name '_mol_interaction_chem_shift.auth_atom_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code no
loop_
_item_examples.case
;
HB1
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_mol_interaction_chem_shift.entry_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__mol_interaction_chem_shift.mol_interaction_chem_shift_diff_id
_item_description.description
;
Pointer to '_Mol_interaction_chem_shift_diff.ID'
;
_item.name '_mol_interaction_chem_shift.mol_interaction_chem_shift_diff_id'
_item.category_id 'mol_interaction_chem_shift'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_chem_shift_anisotropy
_category.description
;
Items in the chem_shift_anisotropy category provide information about a list of reported chemical shift anisotropy values.
;
_category.id 'chem_shift_anisotropy'
loop_
_category_key.name
'_chem_shift_anisotropy.entry_id'
'_chem_shift_anisotropy.id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_anisotropy'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__chem_shift_anisotropy.sf_category
_item_description.description
;
Category definition for the information content of the saveframe
;
_item.name '_chem_shift_anisotropy.sf_category'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_anisotropy.sf_framecode
_item_description.description
;
A label for the saveframe that describes in very brief terms the information
contained in the saveframe.
;
_item.name '_chem_shift_anisotropy.sf_framecode'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'chem_shift_anisotropy_list_1'
_item_type.code 'code'
save_
save__chem_shift_anisotropy.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_chem_shift_anisotropy.entry_id'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__chem_shift_anisotropy.id
_item_description.description
;
An integer value that uniquely identifies this saveframe of chemical shift
anisotropy data from other saveframes of this category in an entry.
;
loop_
_item.name
_item.category_id
_item.mandatory_code
'_chem_shift_anisotropy.id' 'chem_shift_anisotropy' yes
'_cs_anisotropy_experiment.chem_shift_anisotropy_id' 'cs_anisotropy_experiment' yes
'_cs_anisotropy_software.chem_shift_anisotropy_id' 'cs_anisotropy_software' yes
'_cs_anisotropy.chem_shift_anisotropy_id' 'cs_anisotropy' yes
stop_
loop_
_item_linked.child_name
_item_linked.parent_name
'_cs_anisotropy_experiment.chem_shift_anisotropy_id' '_chem_shift_anisotropy.id'
'_cs_anisotropy_software.chem_shift_anisotropy_id' '_chem_shift_anisotropy.id'
'_cs_anisotropy.chem_shift_anisotropy_id' '_chem_shift_anisotropy.id'
stop_
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_anisotropy.data_file_name
_item_description.description
;
The name of the file submitted with this depostion that contains the quantitative
data for this saveframe.
;
_item.name '_chem_shift_anisotropy.data_file_name'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_anisotropy.sample_condition_list_id
_item_description.description
;
Pointer to '_Sample_condition_list.ID'
;
_item.name '_chem_shift_anisotropy.sample_condition_list_id'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__chem_shift_anisotropy.sample_condition_list_label
_item_description.description
;
Pointer to a saveframe of the category 'sample_conditions'
;
_item.name '_chem_shift_anisotropy.sample_condition_list_label'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__chem_shift_anisotropy.spectrometer_frequency_1h
_item_description.description
;
NMR spectrometer operating frequency for protons.
;
_item.name '_chem_shift_anisotropy.spectrometer_frequency_1h'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__chem_shift_anisotropy.val_units
_item_description.description
;
Provide the units used for the chemical shift anisotropy values reported.
;
_item.name '_chem_shift_anisotropy.val_units'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code yes
loop_
_item_enumeration.value
_item_enumeration.detail
ppm ?
stop_
loop_
_item_examples.case
;
ppm
;
stop_
_item_type.code 'code'
save_
save__chem_shift_anisotropy.details
_item_description.description
;
Text describing the reported chemical shift anisotropy data.
;
_item.name '_chem_shift_anisotropy.details'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save__chem_shift_anisotropy.text_data_format
_item_description.description
;
The data format used to represent the chemical shift anisotropy data as
ASCII text in the text block that is the value to the '_Assigned_chem_shift.Text_data'
tag.
;
_item.name '_chem_shift_anisotropy.text_data_format'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'line'
save_
save__chem_shift_anisotropy.text_data
_item_description.description
;
A set of chemical shift anisotropy data formatted as ASCII text.
;
_item.name '_chem_shift_anisotropy.text_data'
_item.category_id 'chem_shift_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'text'
save_
save_cs_anisotropy_experiment
_category.description
;
Items in the CS_anisotropy_experiment category provide pointers to the NMR experiments and samples used to collect the data for a set of reported chemical shift anisotropy data.
;
_category.id 'cs_anisotropy_experiment'
loop_
_category_key.name
'_cs_anisotropy_experiment.experiment_id'
'_cs_anisotropy_experiment.sample_id'
'_cs_anisotropy_experiment.sample_state'
'_cs_anisotropy_experiment.entry_id'
'_cs_anisotropy_experiment.chem_shift_anisotropy_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_anisotropy'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__cs_anisotropy_experiment.experiment_id
_item_description.description
;
Pointer to '_NMR_spec_expt.ID'
;
_item.name '_cs_anisotropy_experiment.experiment_id'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy_experiment.experiment_name
_item_description.description
;
Pointer to a saveframe of the category 'NMR_spectrometer_expt'
;
_item.name '_cs_anisotropy_experiment.experiment_name'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__cs_anisotropy_experiment.sample_id
_item_description.description
;
Pointer to '_Sample.ID'
;
_item.name '_cs_anisotropy_experiment.sample_id'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy_experiment.sample_label
_item_description.description
;
Pointer to a saveframe of the category 'sample'
;
_item.name '_cs_anisotropy_experiment.sample_label'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'sample_1'
_item_type.code 'label'
save_
save__cs_anisotropy_experiment.sample_state
_item_description.description
;
Physical state of the sample either anisotropic or isotropic.
;
_item.name '_cs_anisotropy_experiment.sample_state'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_default.value 'isotropic'
_item_type.code 'line'
save_
save__cs_anisotropy_experiment.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_cs_anisotropy_experiment.entry_id'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__cs_anisotropy_experiment.chem_shift_anisotropy_id
_item_description.description
;
Pointer to '_Chem_shift_anisotropy.ID'
;
_item.name '_cs_anisotropy_experiment.chem_shift_anisotropy_id'
_item.category_id 'cs_anisotropy_experiment'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_cs_anisotropy_software
_category.description
;
Items in the CS_anisotropy_software category provide pointers to the software category and methods category where descriptions of software applications and methods can be found.
;
_category.id 'cs_anisotropy_software'
loop_
_category_key.name
'_cs_anisotropy_software.software_id'
'_cs_anisotropy_software.entry_id'
'_cs_anisotropy_software.chem_shift_anisotropy_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_anisotropy'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__cs_anisotropy_software.software_id
_item_description.description
;
Pointer to '_Software.ID'
;
_item.name '_cs_anisotropy_software.software_id'
_item.category_id 'cs_anisotropy_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy_software.software_label
_item_description.description
;
Pointer to a saveframe of the category 'software'
;
_item.name '_cs_anisotropy_software.software_label'
_item.category_id 'cs_anisotropy_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__cs_anisotropy_software.method_id
_item_description.description
;
Pointer to '_Method.ID'
;
_item.name '_cs_anisotropy_software.method_id'
_item.category_id 'cs_anisotropy_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy_software.method_label
_item_description.description
;
Pointer to a saveframe of the category 'method'
;
_item.name '_cs_anisotropy_software.method_label'
_item.category_id 'cs_anisotropy_software'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'label'
save_
save__cs_anisotropy_software.entry_id
_item_description.description
;
Pointer to '_Entry.ID'
;
_item.name '_cs_anisotropy_software.entry_id'
_item.category_id 'cs_anisotropy_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__cs_anisotropy_software.chem_shift_anisotropy_id
_item_description.description
;
Pointer to '_Chem_shift_anisotropy.ID'
;
_item.name '_cs_anisotropy_software.chem_shift_anisotropy_id'
_item.category_id 'cs_anisotropy_software'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save_cs_anisotropy
_category.description
;
Items in the CS_anisotropy category describe the chemical shift anisotropy values assigned to specific atoms in a molecular assembly.
;
_category.id 'cs_anisotropy'
loop_
_category_key.name
'_cs_anisotropy.id'
'_cs_anisotropy.entry_id'
'_cs_anisotropy.chem_shift_anisotropy_id'
stop_
loop_
_category_group.id
'inclusive_group'
'chem_shift_anisotropy'
stop_
loop_
_category_examples.detail
_category_examples.case
;
?
;
;
?
;
stop_
save_
save__cs_anisotropy.id
_item_description.description
;
Unique identifier for the observed chemical shift anisotropy.
;
_item.name '_cs_anisotropy.id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy.assembly_atom_id
_item_description.description
;
Pointer to '_Atom.Assembly_atom_ID'
;
_item.name '_cs_anisotropy.assembly_atom_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy.entity_assembly_id
_item_description.description
;
Pointer to '_Entity_assembly.ID'
;
_item.name '_cs_anisotropy.entity_assembly_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy.entity_id
_item_description.description
;
Pointer to '_Entity.ID'
;
_item.name '_cs_anisotropy.entity_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy.comp_index_id
_item_description.description
;
Pointer to '_Entity_comp_index.ID'
;
_item.name '_cs_anisotropy.comp_index_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy.seq_id
_item_description.description
;
Pointer to '_Entity_poly_seq_scheme.Seq_ID'
;
_item.name '_cs_anisotropy.seq_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'int'
save_
save__cs_anisotropy.comp_id
_item_description.description
;
Pointer to '_Chem_comp.ID'
;
_item.name '_cs_anisotropy.comp_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__cs_anisotropy.atom_id
_item_description.description
;
Pointer to '_Chem_comp_atom.Atom_ID'
;
_item.name '_cs_anisotropy.atom_id'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'atcode'
save_
save__cs_anisotropy.atom_type
_item_description.description
;
The value for this tag is a standard IUPAC abbreviation for an element
(i.e., H, C, P, etc).
;
_item.name '_cs_anisotropy.atom_type'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'code'
save_
save__cs_anisotropy.val
_item_description.description
;
Chemical shift anisotropy value
;
_item.name '_cs_anisotropy.val'
_item.category_id 'cs_anisotropy'
_item.mandatory_code yes
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__cs_anisotropy.val_err
_item_description.description
;
Estimated error in the chemical shift anisotropy value
;
_item.name '_cs_anisotropy.val_err'
_item.category_id 'cs_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__cs_anisotropy.principal_value_sigma_11_val
_item_description.description
;
?
;
_item.name '_cs_anisotropy.principal_value_sigma_11_val'
_item.category_id 'cs_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__cs_anisotropy.principal_value_sigma_22_val
_item_description.description
;
?
;
_item.name '_cs_anisotropy.principal_value_sigma_22_val'
_item.category_id 'cs_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__cs_anisotropy.principal_value_sigma_33_val
_item_description.description
;
?
;
_item.name '_cs_anisotropy.principal_value_sigma_33_val'
_item.category_id 'cs_anisotropy'
_item.mandatory_code no
loop_
_item_examples.case
;
?
;
stop_
_item_type.code 'float'
save_
save__cs_anisotropy.principal_euler_angle_alpha_val
_item_description.description
;
Value for alpha Euler angle.
;
_item.name '_cs_anisotropy.principal_euler_angle_alpha_