Data Category ihm_external_files

General

Category name
ihm_external_files
Required in PDB entries
no
Category group membership
ihm_group
Used in current PDB entries
No

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories

Category Description

   Category provides details regarding external files. The IHM_EXTERNAL_REFERENCE_INFO
   category captures the top-level details regarding external data sources. 
   This category captures the specific details regarding externally stored files 
   related to the particular I/H model entry.

Category Examples

3

 
 loop_
    _ihm_external_files.id
    _ihm_external_files.reference_id
    _ihm_external_files.file_path
    _ihm_external_files.file_format
    _ihm_external_files.content_type
    _ihm_external_files.file_size_bytes
    _ihm_external_files.details

    1   1   'integrativemodeling-nup84-a69f895/data/EDC_XL_122013.new.dat'  'TXT'    'Input data or restraints' .   'EDC crosslinks file'
    2   1   'integrativemodeling-nup84-a69f895/data/yeast_Nup84_DSS.new.dat'    'TXT'    'Input data or restraints' .   'DSS crosslinks file'
    3   1   'integrativemodeling-nup84-a69f895/data/nup84_kinked_from_class2.pgm'   'PGM'   'Input data or restraints'  .    'Nup84 2DEM class average'
    4   1   'integrativemodeling-nup84-a69f895/data/nup84_kinked_from_class2.mrc'   'MRC'   'Input data or restraints'  .       'Nup84 2DEM class average'
    5   1   'integrativemodeling-nup84-a69f895/data/ScSec13_2-296_new2.pdb' 'PDB'   'Input data or restraints'  . 'Sec13 starting comparative model'
    6   1   'integrativemodeling-nup84-a69f895/scripts/MODELLER_scripts/Nup84/all_align_final2.ali' 'PIR/NBRF'  'Input data or restraints'  . 'Nup84 multiple sequence alignment file'
    7   1   'integrativemodeling-nup84-a69f895/scripts/MODELLER_scripts/Nup84/all_align_final1.ali' 'PIR/NBRF'  'Input data or restraints'  . 'Nup84 multiple sequence alignment file'
    8   1   'integrativemodeling-nup84-a69f895/scripts/nup84.isd.modeling.py'   'Other' 'Modeling workflow or script'  . 'Python integrative modeling main script'
    9   1   'integrativemodeling-nup84-a69f895/scripts/nup84.topology.py'   'Other' 'Modeling workflow or script'  . 'Python script for constructing subunits'
   10   1   'integrativemodeling-nup84-a69f895/scripts/nup84.merge.py'  'Other' 'Modeling workflow or script'  . 'Python script to merge output files'
   11   1   'integrativemodeling-nup84-a69f895/scripts/README'  'TXT'   'Modeling workflow or script'  . 'Readme file'
   12   1   'integrativemodeling-nup84-a69f895/outputs/localization/cluster1/nup84.mrc' 'MRC'   'Modeling or post-processing output'   .   'Nup84 localization density file'
   13   1   'integrativemodeling-nup84-a69f895/outputs/localization/cluster1/nup85.mrc' 'MRC'   'Modeling or post-processing output'   .   'Nup85 localization density file'
   14   1   'integrativemodeling-nup84-a69f895/outputs/localization/cluster1/nup120.mrc'    'MRC'   'Modeling or post-processing output'   .   'Nup120 localization density file'
 # ...  abbreviated ...
 
 loop_
    _ihm_external_files.id
    _ihm_external_files.reference_id
    _ihm_external_files.file_path
    _ihm_external_files.file_format
    _ihm_external_files.content_type
    _ihm_external_files.file_size_bytes
    _ihm_external_files.details
    
     1   2   'data/EDC_XL_122013.dat' 'TXT'  'Input data or restraints'   .    'EDC crosslinks file'
     2   2   'data/yeast_Nup84_DSS.dat'   'TXT'   'Input data or restraints'   .   'DSS crosslinks file'
     3   2   'nup145.mrc'  'MRC'   'Modeling or post-processing output'    .    'Nup145 localization density file'
    # ...  abbreviated ...
 
 loop_
    _ihm_external_files.id
    _ihm_external_files.reference_id
    _ihm_external_files.file_path
    _ihm_external_files.content_type
    _ihm_external_files.details
     1  3  .  'Input data or restraints'  'Raw micrographs from which the class average was derived'
    # ...  abbreviated ...

Key Data Items