PDBx/mmCIF
A Member of the wwPDB

Data Category pdbx_validate_rmsd_bond

Browse:

General

Category name
pdbx_validate_rmsd_bond
Required in PDB entries
no
Category group membership
pdbx_group  validate_group
Used in current PDB entries
Yes, in about 20.1 % of entries

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories
70
View abbreviated category relationship diagram including only those categories used in current PDB entries.

Category Description 

    Data items in the PDBX_VALIDATE_RMSD_BOND category list the
    covalent bonds that have values which deviate from expected 
    values by more than 6*rmsd.

Category Example

View/hide Example 
 
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.linker_flag
 1   0  A   CD   LYS    152  .  .    A   CE   LYS    152  .  .      -0.372     1.136  N
 2   0  A   CG   GLU    166  .  .    A   CD   GLU    166  .  .      -0.622     0.893  N

Key Data Items

Category Data Items

View/hide item list