PDBx/mmCIF
A Member of the wwPDB

Data Category ndb_struct_na_base_pair

Browse:

General

Category name
ndb_struct_na_base_pair
Required in PDB entries
no
Category group membership
ndb_group  struct_group
Used in current PDB entries
Yes, in about 6.5 % of entries

Category Relationship Diagrams

70
View full category relationship diagram including all dictionary data categories
70
View abbreviated category relationship diagram including only those categories used in current PDB entries.

Category Description 

               Data items in the NDB_STRUCT_NA_BASE_PAIR category record details
               of base pairing interactions.

Category Example

View/hide Example 
 
     loop_
    _ndb_struct_na_base_pair.model_number
    _ndb_struct_na_base_pair.i_label_comp_id
    _ndb_struct_na_base_pair.i_label_asym_id
    _ndb_struct_na_base_pair.i_label_seq_id
    _ndb_struct_na_base_pair.i_symmetry
    _ndb_struct_na_base_pair.j_label_comp_id
    _ndb_struct_na_base_pair.j_label_asym_id
    _ndb_struct_na_base_pair.j_label_seq_id
    _ndb_struct_na_base_pair.j_symmetry
    _ndb_struct_na_base_pair.shear
    _ndb_struct_na_base_pair.stretch
    _ndb_struct_na_base_pair.stagger
    _ndb_struct_na_base_pair.buckle
    _ndb_struct_na_base_pair.propeller
    _ndb_struct_na_base_pair.opening
     1 G A 1  1_555 C A 8  7_555   -0.396  -0.156 -0.018  -5.523  -6.752  -3.291
     1 G A 2  1_555 C A 7  7_555   -0.094  -0.220 -0.334  -4.727  -9.765   2.311
     1 G A 3  1_555 C A 6  7_555   -0.285  -0.239  0.008  -6.454 -12.575  -1.181
  #    ...

Key Data Items

Category Data Items

View/hide item list