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Item Index
mmcif_em.dic
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Data Items
Supporting Data
- E -
Categories
53
Category list view/hide
em_entry
Items
1
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_em_entry.id
em_exptl
Items
5
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_em_exptl.entry_id
_em_exptl.reconstruction_method
_em_exptl.resolution_high
_em_exptl.resolution_low
_em_exptl.resolution_published
em_assembly
Items
8
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_em_assembly.entry_id
_em_assembly.id
_em_assembly.array
_em_assembly.composition
_em_assembly.details
_em_assembly.name
_em_assembly.num_components
_em_assembly.superstructure
em_entity_assembly
Items
19
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_em_entity_assembly.id
_em_entity_assembly.assembly_id
_em_entity_assembly.details
_em_entity_assembly.go_id
_em_entity_assembly.ipr_id
_em_entity_assembly.name
_em_entity_assembly.pdbx_cell
_em_entity_assembly.pdbx_cellular_location
_em_entity_assembly.pdbx_engineered
_em_entity_assembly.pdbx_expression_system
_em_entity_assembly.pdbx_expression_system_plasmid
_em_entity_assembly.pdbx_organelle
_em_entity_assembly.pdbx_organism_common
_em_entity_assembly.pdbx_organism_scientific
_em_entity_assembly.pdbx_strain
_em_entity_assembly.pdbx_tissue
_em_entity_assembly.symmetry_type
_em_entity_assembly.synonym
_em_entity_assembly.type
em_entity_assembly_list
Items
7
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_em_entity_assembly_list.assembly_id
_em_entity_assembly_list.entity_id
_em_entity_assembly_list.id
_em_entity_assembly_list.details
_em_entity_assembly_list.mol_wt
_em_entity_assembly_list.mol_wt_method
_em_entity_assembly_list.number_of_copies
em_entity_assembly_mol_wt
Items
5
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_em_entity_assembly_mol_wt.entity_assembly_id
_em_entity_assembly_mol_wt.id
_em_entity_assembly_mol_wt.details
_em_entity_assembly_mol_wt.mol_wt
_em_entity_assembly_mol_wt.mol_wt_method
em_virus_entity
Items
10
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_em_virus_entity.entity_assembly_id
_em_virus_entity.id
_em_virus_entity.empty
_em_virus_entity.enveloped
_em_virus_entity.ictvdb_id
_em_virus_entity.virus_host_category
_em_virus_entity.virus_host_growth_cell
_em_virus_entity.virus_host_species
_em_virus_entity.virus_isolate
_em_virus_entity.virus_type
em_virus_shells
Items
4
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_em_virus_shells.id
_em_virus_shells.virus_entity_id
_em_virus_shells.shell_diameter
_em_virus_shells.triangulation_num
em_helical_entity
Items
7
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_em_helical_entity.entity_assembly_id
_em_helical_entity.id
_em_helical_entity.angular_rotation_per_subunit
_em_helical_entity.axial_rise_per_subunit
_em_helical_entity.axial_symmetry
_em_helical_entity.details
_em_helical_entity.dyad
em_2d_crystal_entity
Items
9
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_em_2d_crystal_entity.entity_assembly_id
_em_2d_crystal_entity.id
_em_2d_crystal_entity.Int_Tables_number
_em_2d_crystal_entity.angle_gamma
_em_2d_crystal_entity.details
_em_2d_crystal_entity.length_a
_em_2d_crystal_entity.length_b
_em_2d_crystal_entity.space_group_name_H-M
_em_2d_crystal_entity.thickness
em_single_particle_entity
Items
5
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_em_single_particle_entity.entity_assembly_id
_em_single_particle_entity.id
_em_single_particle_entity.details
_em_single_particle_entity.point_group_symmetry
_em_single_particle_entity.point_group_symmetry_n
em_sample_preparation
Items
8
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_em_sample_preparation.id
_em_sample_preparation.array_formation_id
_em_sample_preparation.details
_em_sample_preparation.entity_assembly_id
_em_sample_preparation.pH
_em_sample_preparation.sample_concentration
_em_sample_preparation.solution_id
_em_sample_preparation.support_id
em_sample_support
Items
9
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_em_sample_support.id
_em_sample_support.citation_id
_em_sample_support.details
_em_sample_support.film_material
_em_sample_support.grid_material
_em_sample_support.grid_mesh_size
_em_sample_support.grid_type
_em_sample_support.method
_em_sample_support.pretreatment
em_array_formation
Items
12
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_em_array_formation.id
_em_array_formation.type
_em_array_formation.apparatus
_em_array_formation.atmosphere
_em_array_formation.buffer_id
_em_array_formation.citation_id
_em_array_formation.details
_em_array_formation.method
_em_array_formation.pH
_em_array_formation.solution_id
_em_array_formation.temp
_em_array_formation.time
em_solution_composition
Items
4
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_em_solution_composition.id
_em_solution_composition.details
_em_solution_composition.name
_em_solution_composition.pH
em_vitrification
Items
11
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_em_vitrification.entry_id
_em_vitrification.id
_em_vitrification.citation_id
_em_vitrification.cryogen_name
_em_vitrification.details
_em_vitrification.humidity
_em_vitrification.instrument
_em_vitrification.protocol
_em_vitrification.sample_preparation_id
_em_vitrification.temp
_em_vitrification.time_resolved_state
em_imaging
Items
30
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_em_imaging.entry_id
_em_imaging.id
_em_imaging.accelerating_voltage
_em_imaging.calibrated_magnification
_em_imaging.calibrated_magnification_method
_em_imaging.citation_id
_em_imaging.condenser_aperture_details
_em_imaging.details
_em_imaging.detector_id
_em_imaging.diffraction_camera_length
_em_imaging.electron_dose_method
_em_imaging.electron_dose_range
_em_imaging.energy_filter
_em_imaging.energy_window
_em_imaging.illumination_mode
_em_imaging.image_scanning_id
_em_imaging.imaging_cryogen
_em_imaging.microscope_id
_em_imaging.mode
_em_imaging.nominal_defocus_max
_em_imaging.nominal_defocus_min
_em_imaging.nominal_magnification
_em_imaging.objective_aperture_details
_em_imaging.sample_support_id
_em_imaging.selective_aperture
_em_imaging.specimen_holder_model
_em_imaging.spot_size
_em_imaging.temperature
_em_imaging.tilt_angle_max
_em_imaging.tilt_angle_min
em_detector
Items
3
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_em_detector.entry_id
_em_detector.id
_em_detector.type
em_detector_film
Items
6
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_em_detector_film.detector_id
_em_detector_film.details
_em_detector_film.dimension_x
_em_detector_film.dimension_y
_em_detector_film.film_processing_conditions
_em_detector_film.film_type
em_detector_CCD
Items
6
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_em_detector_CCD.detector_id
_em_detector_CCD.details
_em_detector_CCD.dimension_x
_em_detector_CCD.dimension_y
_em_detector_CCD.model
_em_detector_CCD.pixel_size
em_image_scanning
Items
4
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_em_image_scanning.entry_id
_em_image_scanning.id
_em_image_scanning.citation_id
_em_image_scanning.type
em_image_scanning_film
Items
9
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_em_image_scanning_film.image_scanning_id
_em_image_scanning_film.binning_x
_em_image_scanning_film.binning_y
_em_image_scanning_film.bits_per_pixel
_em_image_scanning_film.details
_em_image_scanning_film.od_range
_em_image_scanning_film.scanner_model
_em_image_scanning_film.spot_size
_em_image_scanning_film.step_size
em_image_readout_ccd
Items
7
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_em_image_readout_ccd.image_scanning_id
_em_image_readout_ccd.binning_x
_em_image_readout_ccd.binning_y
_em_image_readout_ccd.details
_em_image_readout_ccd.offset_x
_em_image_readout_ccd.offset_y
_em_image_readout_ccd.speed
em_particle_selection
Items
12
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_em_particle_selection.entity_assembly_id
_em_particle_selection.id
_em_particle_selection.centering_method
_em_particle_selection.citation_id
_em_particle_selection.correlation_threshold
_em_particle_selection.details
_em_particle_selection.grow_threshold
_em_particle_selection.local_maxima_radius
_em_particle_selection.max_radius
_em_particle_selection.method
_em_particle_selection.min_radius
_em_particle_selection.pre_processing_filters_details
em_single_particle_selection
Items
7
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_em_single_particle_selection.selection_id
_em_single_particle_selection.citation_id
_em_single_particle_selection.details
_em_single_particle_selection.method
_em_single_particle_selection.num_micrographs
_em_single_particle_selection.num_particles
_em_single_particle_selection.protocol
em_helical_selection
Items
3
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_em_helical_selection.selection_id
_em_helical_selection.num_helices
_em_helical_selection.num_unit_cells
em_2d_crystal_selection
Items
2
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_em_2d_crystal_selection.selection_id
_em_2d_crystal_selection.details
em_3d_reconstruction
Items
21
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_em_3d_reconstruction.entry_id
_em_3d_reconstruction.id
_em_3d_reconstruction.amplitude_correction_details
_em_3d_reconstruction.b-factor_correction_details
_em_3d_reconstruction.citation_id
_em_3d_reconstruction.ctf_correction_method_details
_em_3d_reconstruction.details
_em_3d_reconstruction.envelope_function_correction_details
_em_3d_reconstruction.helix_average_phase_residual
_em_3d_reconstruction.helix_layerline_d_res_high
_em_3d_reconstruction.helix_number_datasets
_em_3d_reconstruction.helix_straightening_details
_em_3d_reconstruction.local_symmetry_detail
_em_3d_reconstruction.method_details
_em_3d_reconstruction.num_asymmetric_units
_em_3d_reconstruction.num_particles
_em_3d_reconstruction.resolution
_em_3d_reconstruction.resolution_method_details
_em_3d_reconstruction.voxel_size_x
_em_3d_reconstruction.voxel_size_y
_em_3d_reconstruction.voxel_size_z
em_3d_fitting
Items
10
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_em_3d_fitting.entry_id
_em_3d_fitting.id
_em_3d_fitting.details
_em_3d_fitting.local_variance
_em_3d_fitting.method
_em_3d_fitting.overall_b_value
_em_3d_fitting.quality_details
_em_3d_fitting.ref_protocol
_em_3d_fitting.ref_space
_em_3d_fitting.target_criteria
em_3d_fitting_list
Items
27
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_em_3d_fitting_list.3d_fitting_id
_em_3d_fitting_list.id
_em_3d_fitting_list.end_seq
_em_3d_fitting_list.entry_id
_em_3d_fitting_list.fitted_pdb_chain_id
_em_3d_fitting_list.fitted_pdb_entry_id
_em_3d_fitting_list.model_details
_em_3d_fitting_list.pdb_chain_id
_em_3d_fitting_list.pdb_entry_id
_em_3d_fitting_list.start_pdb_symm_as_xyz
_em_3d_fitting_list.start_seq
_em_3d_fitting_list.transform_matrix[1][1]
_em_3d_fitting_list.transform_matrix[1][2]
_em_3d_fitting_list.transform_matrix[1][3]
_em_3d_fitting_list.transform_matrix[1][4]
_em_3d_fitting_list.transform_matrix[2][1]
_em_3d_fitting_list.transform_matrix[2][2]
_em_3d_fitting_list.transform_matrix[2][3]
_em_3d_fitting_list.transform_matrix[2][4]
_em_3d_fitting_list.transform_matrix[3][1]
_em_3d_fitting_list.transform_matrix[3][2]
_em_3d_fitting_list.transform_matrix[3][3]
_em_3d_fitting_list.transform_matrix[3][4]
_em_3d_fitting_list.transform_matrix[4][1]
_em_3d_fitting_list.transform_matrix[4][2]
_em_3d_fitting_list.transform_matrix[4][3]
_em_3d_fitting_list.transform_matrix[4][4]
em_micrographs
Items
19
Item list view/hide
_em_micrographs.entry_id
_em_micrographs.image_id
_em_micrographs.amplitude_contrast
_em_micrographs.astigmatism_flag
_em_micrographs.astigmatism_ratio
_em_micrographs.averaging_overlap
_em_micrographs.circular_averaging_flag
_em_micrographs.correction_type
_em_micrographs.edge_threshold
_em_micrographs.experiment_mode
_em_micrographs.exposure_time
_em_micrographs.exposure_type
_em_micrographs.field_size
_em_micrographs.image_filter
_em_micrographs.microscope_id
_em_micrographs.nominal_defocus
_em_micrographs.power_factor
_em_micrographs.refined_defocus_estimate
_em_micrographs.specimen_id
em_microscope
Items
4
Item list view/hide
_em_microscope.id
_em_microscope.electron_source
_em_microscope.model
_em_microscope.nominal_cs
em_classes
Items
18
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_em_classes.id
_em_classes.alignment_method
_em_classes.angular_error_threshold
_em_classes.average_angular_error
_em_classes.average_translational_pixel_shift_error
_em_classes.clustering_method
_em_classes.details
_em_classes.entry_id
_em_classes.euler_1
_em_classes.euler_2
_em_classes.euler_3
_em_classes.fractional_minimum_amplitude
_em_classes.global_correlation_coefficient
_em_classes.global_real-space_correlation_coefficient
_em_classes.internal_resolution_flag
_em_classes.num_particles
_em_classes.origin_x
_em_classes.origin_y
em_3d_refinement
Items
12
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_em_3d_refinement.id
_em_3d_refinement.alignment_radius
_em_3d_refinement.angular_search_step_size
_em_3d_refinement.convergence_criterion
_em_3d_refinement.entry_id
_em_3d_refinement.max_spatial_frequency
_em_3d_refinement.max_spatial_frequency_criterion
_em_3d_refinement.method_details
_em_3d_refinement.num_iterations
_em_3d_refinement.num_particles_refined
_em_3d_refinement.projection_radius
_em_3d_refinement.structure_radius
em_map_resolution
Items
19
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_em_map_resolution.entry_id
_em_map_resolution.3d_reconstruction_resolution_method
_em_map_resolution.curve_id
_em_map_resolution.cutoff_used
_em_map_resolution.details
_em_map_resolution.dpr_crit
_em_map_resolution.dpr_spatial_frequency
_em_map_resolution.dpr_value
_em_map_resolution.fsc_criteria
_em_map_resolution.fsc_significance_threshold
_em_map_resolution.fsc_spatial_frequency
_em_map_resolution.map_id
_em_map_resolution.nyquist_frequency
_em_map_resolution.resolution_cut_off_criteria
_em_map_resolution.sigma_weight
_em_map_resolution.spectral_value
_em_map_resolution.title
_em_map_resolution.x_axis
_em_map_resolution.y_axis
em_fsc_curve
Items
4
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_em_fsc_curve.curve_id
_em_fsc_curve.id
_em_fsc_curve.x
_em_fsc_curve.y
em_stain
Items
10
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_em_stain.entry_id
_em_stain.id
_em_stain.citation
_em_stain.details
_em_stain.humidity
_em_stain.protocol
_em_stain.sample_preparation_id
_em_stain.temperature
_em_stain.time_resolved_state
_em_stain.type
em_cryo_stain
Items
12
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_em_cryo_stain.entry_id
_em_cryo_stain.id
_em_cryo_stain.citation
_em_cryo_stain.cryogen_name
_em_cryo_stain.details
_em_cryo_stain.humidity
_em_cryo_stain.instrument
_em_cryo_stain.protocol
_em_cryo_stain.sample_preparation_id
_em_cryo_stain.temperature
_em_cryo_stain.time_resolved_state
_em_cryo_stain.type
em_embedding_agent
Items
7
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_em_embedding_agent.entry_id
_em_embedding_agent.id
_em_embedding_agent.citation
_em_embedding_agent.details
_em_embedding_agent.temperature
_em_embedding_agent.time_resolved
_em_embedding_agent.type
em_map
Items
61
Item list view/hide
_em_map.entry_id
_em_map.id
_em_map.2d_crystal_grow_id
_em_map.3d_reconstruction_id
_em_map.author_threshold
_em_map.axisOrderFast
_em_map.axisOrderMedium
_em_map.axisOrderSlow
_em_map.cell_angle_alpha
_em_map.cell_angle_beta
_em_map.cell_angle_gamma
_em_map.cell_length_a
_em_map.cell_length_a_esd
_em_map.cell_length_b
_em_map.cell_length_b_esd
_em_map.cell_length_c
_em_map.cell_length_c_esd
_em_map.col_limit
_em_map.contrast_convention
_em_map.data_type
_em_map.details
_em_map.enforced_symmetry
_em_map.handedness_method
_em_map.imaging_id
_em_map.isosurface_countour_level
_em_map.local_symmetry_details
_em_map.map_eigenvalues_id
_em_map.map_files_id
_em_map.map_structure_factors_id
_em_map.map_symmetry_id
_em_map.num_atoms
_em_map.num_class_averages
_em_map.num_columns
_em_map.num_observations
_em_map.num_rows
_em_map.num_sections
_em_map.num_unique_reflns
_em_map.origin_x
_em_map.origin_y
_em_map.origin_z
_em_map.percent_reflns_collected
_em_map.phase_origin_method
_em_map.pixel_x
_em_map.pixel_y
_em_map.pixel_z
_em_map.plane_group
_em_map.r_free
_em_map.r_value_all_data
_em_map.reflection_wavelength
_em_map.release_date
_em_map.row_limit
_em_map.sec_limit
_em_map.spaceGroupNumber
_em_map.spacing_x
_em_map.spacing_y
_em_map.spacing_z
_em_map.thickness
_em_map.value_density_max
_em_map.value_density_mean
_em_map.value_density_min
_em_map.value_density_std
em_map_ctf_correction
Items
4
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_em_map_ctf_correction.id
_em_map_ctf_correction.map_id
_em_map_ctf_correction.details
_em_map_ctf_correction.method
em_map_structure_factors
Items
5
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_em_map_structure_factors.id
_em_map_structure_factors.map_id
_em_map_structure_factors.details
_em_map_structure_factors.map_files_id
_em_map_structure_factors.method
em_map_symmetry
Items
5
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_em_map_symmetry.map_id
_em_map_symmetry.enforced_symmetry
_em_map_symmetry.equiv_pos_as_xyz
_em_map_symmetry.id
_em_map_symmetry.plane_group_name_H-M
em_orthogonal_slices
Items
8
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_em_orthogonal_slices.map_id
_em_orthogonal_slices.id
_em_orthogonal_slices.x_slice_id
_em_orthogonal_slices.x_slice_number
_em_orthogonal_slices.y_slice_id
_em_orthogonal_slices.y_slice_number
_em_orthogonal_slices.z_slice_id
_em_orthogonal_slices.z_slice_number
em_map_figure
Items
5
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_em_map_figure.id
_em_map_figure.map_id
_em_map_figure.details
_em_map_figure.map_files_id
_em_map_figure.num_bytes
em_map_surface_rendering
Items
6
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_em_map_surface_rendering.id
_em_map_surface_rendering.map_id
_em_map_surface_rendering.details
_em_map_surface_rendering.map_files_id
_em_map_surface_rendering.method
_em_map_surface_rendering.threshold_volume_mol_wt
em_map_files
Items
6
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_em_map_files.id
_em_map_files.map_id
_em_map_files.details
_em_map_files.orthogonal_slices_x_slice_id
_em_map_files.orthogonal_slices_y_slice_id
_em_map_files.orthogonal_slices_z_slice_id
em_map_eigenvalues
Items
6
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_em_map_eigenvalues.id
_em_map_eigenvalues.map_id
_em_map_eigenvalues.details
_em_map_eigenvalues.max_value
_em_map_eigenvalues.min_value
_em_map_eigenvalues.spectrum
em_tomography
Items
7
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_em_tomography.id
_em_tomography.StagePositionX
_em_tomography.StagePositionY
_em_tomography.details
_em_tomography.entry_id
_em_tomography.num_sections
_em_tomography.tilt_angle_incr
em_tomography_image
Items
10
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_em_tomography_image.id
_em_tomography_image.defocus
_em_tomography_image.electron_dose
_em_tomography_image.entry_id
_em_tomography_image.exposure_time
_em_tomography_image.magnification
_em_tomography_image.pixel_size
_em_tomography_image.shift_x
_em_tomography_image.shift_y
_em_tomography_image.tilt_angle
em_electron_diffraction
Items
12
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_em_electron_diffraction.entry_id
_em_electron_diffraction.id
_em_electron_diffraction.d_res_high
_em_electron_diffraction.details
_em_electron_diffraction.num_diff_patterns
_em_electron_diffraction.num_images
_em_electron_diffraction.num_reflections_total
_em_electron_diffraction.num_unique_reflections
_em_electron_diffraction.overall_error
_em_electron_diffraction.rejection_criteria_error
_em_electron_diffraction.tilt_range_max
_em_electron_diffraction.tilt_range_min
em_electron_diffraction_tilt_angle
Items
5
Item list view/hide
_em_electron_diffraction_tilt_angle.electron_diffraction_id
_em_electron_diffraction_tilt_angle.id
_em_electron_diffraction_tilt_angle.num_images
_em_electron_diffraction_tilt_angle.num_patterns
_em_electron_diffraction_tilt_angle.tilt_angle
em_electron_diffraction_shell
Items
5
Item list view/hide
_em_electron_diffraction_shell.electron_diffraction_id
_em_electron_diffraction_shell.id
_em_electron_diffraction_shell.d_res_high
_em_electron_diffraction_shell.d_res_low
_em_electron_diffraction_shell.residual